@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VTZ5: (2017-12-16 )
MSLLNHFATELDELKQQGNFRQFTQNVQHGRFITIQNKTMLNLASNDYLGLAADINLRQEFLDSYPLERSYFSSSSSRLLTGNFDEYEQLENSLSQAFSGRAALLFNSGYHMNIGILPAVADSKTLILADKLVHASMIDGIRLSGAQYVRYRHNDLQHLEQLLQKYHDDDQIERIIVVTESIFSMDGDETDLTALVQLKKRFAKTMLYVDEAHSIGVRGQQGLGCAEQYNVIQEIDFLVGTLGKALAAVGGYIICDQIIKDYLINKMRPLIFSTAQPPIVMAWANFIFKKVLMAQSQREHLKNISQYLQQAVVQKGYVSPSTSHIIPVIVGESQATIDKAKQVQESGFYAMPVRPPTVPKNSSRLRISLTSMVEQHELEALVSFL

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLS_A_2(2W8J)
?
[Raw transfer]




PLP_B_4(3TQX)
?
[Raw transfer]




KAM_A_5(1DJ9)
BIOF_ECOLI
[Raw transfer]




PMP_A_2(2XBN)
?
[Raw transfer]




PLS_A_2(2W8W)
?
[Raw transfer]




PLP_A_5(1DJE)
BIOF_ECOLI
[Raw transfer]




PLP_A_5(1DJE)
BIOF_ECOLI
[Raw transfer]




LLF_A_3(2G6W)
BIOF_ECOLI
[Raw transfer]




MYB_A_4(4BMK)
?
[Raw transfer]




SER_A_2(3A2B)
?
[Raw transfer]




SER_A_2(3A2B)
?
[Raw transfer]




BEN_B_10(5VNX)
BIOF_BURM1
[Raw transfer]




BEN_C_14(5VNX)
BIOF_BURM1
[Raw transfer]




BEN_C_14(5VNX)
BIOF_BURM1
[Raw transfer]




BEN_A_4(5VNX)
BIOF_BURM1
[Raw transfer]




AKB_B_4(1FC4)
KBL_ECOLI
[Raw transfer]




BEN_A_4(5VNX)
BIOF_BURM1
[Raw transfer]




AKB_A_3(1FC4)
KBL_ECOLI
[Raw transfer]




44 HHSearch 83.1633% -6 - C1 -5VNX 2.9 BIOF_BURM1
45 HHSearch 82.8833% -6 * C1 *5VNX 2.9 BIOF_BURM1
50 HHSearch 82.5630%-102 - C1 -2X8U - ? -
23 PsiBlast_CBE 80.2333% -17 - C1 -5VNX 3.0 BIOF_BURM1
36 HHSearch 79.9827%-122 - C1 -3KKI - CQSA_VIBCH -
21 PsiBlast_CBE 79.7333% -17 - C1 -5VNX 2.9 BIOF_BURM1
48 HHSearch 79.3227%-124 - C1 -2WKA - CQSA_VIBCH -
24 Fugue 78.8830% -33 - C1 -1BS0 - BIOF_ECOLI -
22 PsiBlast_CBE 78.6633% -15 - C1 -5VNX 2.9 BIOF_BURM1
3 PsiBlast_PDB 78.4132% -11 - C1 -5JAY - BIOF_PARXL -
41 HHSearch 77.3931% -8 - C1 -1DJE 4.5 BIOF_ECOLI
42 HHSearch 76.8031% -10 - C1 -1BS0 - BIOF_ECOLI -
11 PsiBlast_PDB 75.6228% -99 - C1 -2W8J 4.7 ?
46 HHSearch 75.0727% -18 - C1 -1FC4 5.1 KBL_ECOLI
19 PsiBlast_PDB 75.0428% -99 - C1 -4BMK 2.6 ?
12 PsiBlast_PDB 74.3528% -98 - C1 -2XBN 3.8 ?
35 HHSearch 74.1528% 0 - C1 -2BWN - HEM1_RHOCB -
49 HHSearch 73.9130% 4 - C1 -3A2B 3.3 ?
17 PsiBlast_PDB 73.8428% -99 - C1 -2W8W 4.0 ?
34 HHSearch 73.3328% 0 - C1 -2BWO - HEM1_RHOCB -
6 PsiBlast_PDB 71.2531% -24 - C1 -1DJ9 4.4 BIOF_ECOLI
7 PsiBlast_PDB 71.0331% -21 - C1 -1DJE 4.5 BIOF_ECOLI
5 PsiBlast_PDB 70.5431% -18 - C1 -2G6W 3.3 BIOF_ECOLI
1 PsiBlast_PDB 66.5930% 6 - C1 -3A2B 3.3 ?