@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XZL9: (2018-01-15 )
MREYKGLKIAVAGTGYVGLSIATLLAQSHTVTAVDIIPEKVELINNKKSPIQDDYIEMYLAKKELDLMATVDGVSAYKDADFVVIAAPTNYDSKKNFFDTSAVEAVIKLVMEVNPEAIMVIKSTIPVGYTASIREKTGSKNIIFSPEFLRESKALYDNLYPSRIIVGTDMEDERLVEAAQTFAKLLQEGAIKENVDTLFMGFTEAEAVKLFANTYLALRVSYFNELDTYAEMKGLNTQQIINGVCRDPRIGTHYNNPSFGYGGYCLPKDTKQLLANYEDVPENLIEAIVESNRTRKNFIADRVLELAGAYEANSHWDASKEKKVVIGVYRLTMKSNSDNFRQSSIQGVMKRVKAKGTTVVIYEPSLKDGEIFFGSKVVNDLDQFKAMCDSIIANRYDTCLDDIKEKVYTRDIFQRD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAI_A_5(1DLJ)
UDG_STRPY
[Raw transfer]



NAI_A_5(1DLJ)
UDG_STRPY
[Raw transfer]



NAI_A_5(1DLJ)
UDG_STRPY
[Raw transfer]



NAD_A_5(1DLI)
UDG_STRPY
[Raw transfer]



NAD_A_3(4A7P)
?
[Raw transfer]



GOL_A_9(1DLJ)
UDG_STRPY
[Raw transfer]



GOL_A_8(1DLI)
UDG_STRPY
[Raw transfer]



UGA_A_3(3PJG)
?
[Raw transfer]



UPG_A_2(3VTF)
?
[Raw transfer]



CXS_A_2(3PJG)
?
[Raw transfer]
27 HHSearch 93.9063%-104 - C2 -3PJG 7.2 ?
1 PsiBlast_PDB 93.5161%-102 - C2 -3PJG 2.3 ?
29 HHSearch 88.6659% -52 - C2 -1DLJ 11.4 UDG_STRPY
49 Fugue 88.3058% -49 - C2 -1DLJ 11.4 UDG_STRPY
3 PsiBlast_PDB 87.1657% -49 - C2 -1DLJ 11.4 UDG_STRPY
2 PsiBlast_PDB 86.3858% -53 - C2 -1DLI 11.2 UDG_STRPY
50 Fugue 59.5123% 8 - C2 -2Q3E - UGDH_HUMAN -
36 HHSearch 58.8523% 2 - C2 -5VR8 - ? -
35 HHSearch 58.6022% 0 - C2 -3KHU - UGDH_HUMAN -
44 HHSearch 57.1625% -6 - C2 -1MUU - ALGD_PSEAE -
33 HHSearch 57.1123% 0 - C2 -2O3J - UGDH_CAEEL -
18 PsiBlast_PDB 56.2825% 11 - C2 -5TJH - UGDH_HUMAN -
45 HHSearch 55.9325% -4 - C2 -1MV8 - ALGD_PSEAE -
34 HHSearch 55.9123% 3 - C2 -2O3J - UGDH_CAEEL -
17 PsiBlast_PDB 55.7425% 8 - C2 -5VR8 - ? -
16 PsiBlast_PDB 55.7125% 11 - C2 -2QG4 - UGDH_HUMAN -
37 HHSearch 55.2727% 0 - C- -3GG2 - ? -
15 PsiBlast_PDB 55.1125% 13 - C2 -2Q3E - UGDH_HUMAN -
39 HHSearch 54.6727% 1 - C2 -3VTF - ? -
43 HHSearch 54.6521% -8 - C2 -4XR9 - ? -