@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu00050: (2016-06-01 )
MYIHLGDDFVVSTRDIVGIFDFKANMSPIVEEFLKKQKHKVVPSVNGTPKSIVVTVQNIYYSPLSSSTLKKRAQFMFEIDS
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....-..-...10..--------......-----20......--.---.30....----------.--.-..40........50-.......---.60.........70.........80------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
I
H-LG-D
D
F
V
V
ST--------R
D
I
V
G
I
-----
F
DFKAN
M
S
--
P
---
I
V
E
E
F
L
K
----------
K
--
Q
-
K
H
KVVPSVNGTP
K
S
-
I
V
V
T
V
Q
N
---
I
Y-YSPL
S
S
S
T
L
K
-
K
R
A
Q
F
M
F
EIDS------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
70.13
30%
-112
- C6 -
5DN8
1
DER_COXBU
A:
[89-156]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
F
L
-----
V
D
A
K
A
G
L
V
--
P
A
D
E
I
I
A
E
R
L
R
----------
K
--
K
-
G
K
K
I
F
L
A
V
N
K
A
D
R
A
-
R
A
A
V
V
Q
S
---
D
F
-
Y
---------------------------------------------------------------------------------------------------------------------------
18
Fugue
69.40
19%
-27
- C5 -
1PRT
-
TOX5_BORPE
F:
[2-99]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
T
H
-
L
Y
-
K
N
F
T
V
Q
E
--------
L
A
L
K
L
K
GKNQE
F
C
L
T
A
F
M
S
GR
S
---
L
V
R
A
C
L
S
DAGHEHDTWF
D
--
T
-
M
L
G
F
A
I
S
A
Y
A
L
K
S
R
-
I
A
L
T
V
E
D
---
S
P
-
Y
P
G
T
P
G
D
L
L
E
-
L
Q
I
C
P
L
N
G
Y
C
E
------------------------------------------------------------------------------------------------------
13
Fugue
68.98
13%
-87
* C5 *
4ERN
-
ERCC3_HUMAN
A:
[502-730]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------I
A
K
V
Q
C
A
E
V
W
C
P
M
S
P
E
F
Y
R
E
Y
V
A
IKTK
K
R
I
L
L
Y
T
M
N
P
N
K
F
R
A
C
Q
F
L
I
K
F
H
E
R
-
R
N
-
D
K
I
I
V
F
A
--------
D
N
V
F
A
L
-----
K
E
Y
A
I
R
L
N
--
K
P
Y
-
I
Y
G
P
T
S
Q
----------
G
--
E
-
R
M
Q
I
L
Q
N
F
K
H
N
P
K
------
I
N
T
---
I
F
-
I
S
K
V
G
D
T
S
F
D
L
P
E
A
N
V
L
I
Q
I
S
S
HGGS
R
R
Q
E
A
Q
R
L
G
R
V
LRAKKGMVAEEYN
A
F
F
Y
S
L
V
S
Q
DTQ
E
M
A
Y
S
T
K
R
Q
R
F
L
V
D
Q
GYS
F
K
V
I
TKLAGMEEEDLAFST
K
E
E
Q
Q
Q
L
L
Q
K
V
L
A
ATDLDAEEEVVA
21
Fugue
65.61
24%
-73
- C5 -
1K25
-
?
A:
[632-692]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
--------
E
S
S
Y
A
M
-----
P
S
I
K
D
I
S
P
--
G
---
E
L
A
E
A
L
R
----------
R
--
N
-
I
--
V
Q
P
I
V
V
G
T
G
T
K
-
I
K
E
T
----------
S
V
E
E
G
T
N
L
A
-
P
N
Q
Q
V
L
L
L
S
D
K
------------------------------------------------------------------------------------------------------
17
Fugue
61.22
14%
-66
- C5 -
2ODK
1
?
A:
[4-53]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
V
W
P
V
-----
Q
D
A
K
A
R
F
S
--
E
---
F
L
D
A
C
I
T
----------
E
--
G
-
P
Q
I
V
S
R
--
R
G
A
E
E
A
-
V
L
V
P
I
G
E
---
W
R
-
R
L
Q
A
A
A
----------------------------------------------------------------------------------------------------------------------
15
Fugue
60.25
10%
-94
- C5 -
1V74
-
IMMD_ECOLX
B:
[1-87]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNKM
A
M
I
D
-
L
A
-
K
L
F
L
A
S
K
--------
I
T
---
A
-----
I
E
F
S
E
R
I
C
--
V
---
E
R
R
R
L
Y
G
----------
V
--
K
-
D
--
L
S
P
N
I
L
N
C
G
E
E
-
L
F
M
A
A
E
R
---
F
E
-
P
D
A
D
R
A
N
Y
E
I
-
D
D
N
G
L
K
V
E
V
R
S
I
L
E
K
F
KL-----------------------------------------------------------------------------------------------
22
Fugue
60.00
18%
-34
- C3 -
2A7Y
-
Y2302_MYCTU
A:
[1-80]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
H
A
K
-
V
G
-
D
Y
L
V
V
K
G
--------
T
T
T
---------
E
R
H
D
Q
H
A
--
E
---
I
I
E
V
R
S
A
----------
D
GS
P
-
P
Y
V
V
R
W
L
V
N
G
H
E
T
T
-
V
Y
P
G
S
D
A
---
V
V
-
V
T
A
T
E
H
A
E
A
E
-
K
R
A
A
A
R
A
G
H
A
A
T-----------------------------------------------------------------------------------------------------
16
Fugue
59.68
8%
-51
- C5 -
3HS2
-
PHD_BPP1
A:
[1-56]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
S
I
N
F
-----
R
T
A
R
G
N
L
S
--
E
---
V
L
N
N
V
E
A
----------
G
--
E
-
E
V
E
I
T
R
--
R
G
R
E
P
A
-
V
I
--------------
V
S
K
A
T
F
E
-
A
Y
K
K
A
A
L
D
A
E
F
------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
57.84
48%
-53
- C6 -
3SLG
-
?
A:
[117-155]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
F
E
A
N
L
---
P
---
I
V
R
S
A
V
K
----------
Y
--
G
-
K
H
L
V
F
P
S
T
S
-----------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
57.65
24%
-2
- C4 -
5C2V
10
?
A:
[1-781]
EPVMTGGPVQGKALWTD
Y
S
G
M
S
K
E
V
QGPVS
Q
I
L
F
T
Q
S
P
RTAKGDPYQNYPHYIPEG
S
R
I
V
L
F
D
LNTK
E
L
K
V
LTNDFATAFD
P
C
T
Y
WDGK
K
F
A
F
A
G
V
H
KKGG
G
C
Q
I
W
E
M
N
IDGSGLRQMTDLKGTC
R
S
P
I
Y
Y
A
A
GSIE
E
G
E
G
R
I
I
W
R
DRE
G
D
W
K
E
H
G
MVEKT
G
M
I
I
F
S
G
S
P
E
GVMDEFHNP
Y
A
Y
N
L
Y
R
L
D
TQGG
K
I
I
Q
R
I
TGHVLSGIEFPHLN
T
T
I
D
Q
ITYNLSSNFD
P
W
L
T
PD
G
N
I
L
F
S
S
V
QANGSRAGG
E
G
R
V
M
I
C
V
D
N
WDGA
Y
P
R
P
IYGNCDGEIGGTSGRSQ
A
K
I
T
FGDRKI
V
Y
V
E
S
PYMNWG
V
G
Q
L
A
A
V
S
WDAPFNKTYEKLTGKDG
G
L
Y
R
S
P
Y
P
L
PDD
R
M
L
V
S
Y
A
ERG
D
F
G
I
Y
W
F
N
FSKCAAGDKVYDDPNWNDHQ
P
A
P
V
Y
V
K
Y
K
P
R
W
I
N
T
FTAGKN
F
G
V
T
VVTY
Q
P
F
D
QVKVEGYP
H
S
W
G
T
W
I
C
FDTTLSDQPVGPYPHQKA
K
N
V
S
HGDIK
A
V
R
I
I
Q
G
Y
Q
CVEPDSTRFRVGAGAHLLGGERSSSNSGTAF
Q
Q
R
G
I
I
G
Y
Q
Y
V
E
SDG
S
T
V
T
S
Q
L
S
D
V
P
Y
Y
M
Q
I
L
D
DKGMSVQTAL
T
W
A
Y
L
R
P
Y
H
G
R
I
C
SGCHYGSYRGRAFKNIHA
K
A
L
Y
N
W
WYDDRSHYDSPFAFR
Y
L
K
F
D
NDGNY
K
G
V
K
-
H
G
-
E
D
V
V
G
T
T
SQPVEGLT
L
D
K
Q
R
T
-----
V
D
F
R
R
D
I
Q
--
P
---
I
L
D
A
K
C
A
----------
M
C-
H
-
D
S
N
N
P
P
N
L
G
G
G
L
E
---
L
V
S
V
D
G
---
I
A
A
Y
S
R
A
Y
N
S
L
L
E
-
P
Q
R
G
K
D
P
N
I
G
G
KYVNPSAAINS
L
L
V
W
R
L
Y
EAELSANAPREKIFPIEGRLLHNKFLT
Q
D
E
R
Y
A
I
V
E
W
I
D
L
GAQWDNIPGPDFYPGYLV--------------------------
20
Fugue
53.76
14%
-20
- C5 -
3NZL
-
A:
[7-79]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
H
S
H
M
L
P
-
P
E
Q
-------------------------
W
S
H
T
T
V
--
R
---
N
A
L
K
D
L
L
----------
K
--
D
M
N
Q
S
S
L
A
K
E
C
P
L
S
Q
S
M
I
S
S
I
V
N
S
---
T
Y
-
Y
A
N
V
S
A
A
K
C
Q
-
E
F
G
R
W
Y
K
H
F
K
K
T-----------------------------------------------------------------------------------------------------
11
HHSearch
47.39
9%
-133
* C6 *
2ZDI
1
PFDA_PYRHO
C:
[83-107]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
S
-
V
G
-
S
G
Y
A
V
E
R
S
I
------
D
E
A
I
S
F
-----
L
E
K
R
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
47.05
16%
-74
- C7 -
4A8X
-
?
B:
[656-682]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
D
D
-
L
F
R
K
T
K
G
TP
C
I
Y
-
W
L
P
L
T
P
E
A
I
A
-
E
----------------------------------------------------------------------------------------------------------------
6
HHSearch
44.20
27%
-13
- C2 -
1IQO
-
?
A:
[33-58]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
S
D
--------
D
D
E
I
A
I
-----
I
S
I
K
G
T
Q
S
--
N
---
H
-
V
L
F
L
S
----------
S
------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
42.48
18%
-108
- C6 -
4X0G
3
ELBA1_DROME
A:
[2-35]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
T
-
I
G
P
N
G
T
E
V
S
R
--------
I
S
L
S
A
I
-----
N
W
A
M
T
-
G
P
--
S
---
I
T
R
K
L
L
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
41.67
16%
-123
- C6 -
4IX7
-
INSV_DROME
A:
[4-23]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
S
-
I
G
P
N
N
T
C
V
P
A
--------
S
V
F
E
N
I
-----
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
36.92
9%
-124
- C6 -
1FXK
-
PFDA_METTH
C:
[77-100]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
M
S
-
V
G
-
A
G
V
A
I
K
K
N
F
------
E
D
A
M
E
S
-----
I
K
S
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
32.19
28%
57
* C7 *
4A8X
-
?
B:
[669-682]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
---
I
Y
-
W
L
P
L
T
P
E
A
I
A
-
E
----------------------------------------------------------------------------------------------------------------
9
HHSearch
24.01
33%
131
- C6 -
1M93
-
SPI2_CWPXB
A:
[13-27]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
N
---
V
F
-
I
S
P
P
S
I
S
S
V
L
------------------------------------------------------------------------------------------------------------------
5
HHSearch
19.67
33%
144
- C1 -
2L2L
-
B:
[211-219]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
-
F
I
V
T
D
E
D
----------------------------------------------------------------------------------------------------------------------------------