@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 166_tV_ORYSA: (2014-05-02 )
AGECGRVPVDQVALKLAPCAAATQNPRAAVPPNCCAQVRSIGRNPKCLCAVMLSNTARSAGVKPAVAMTIPKRCAIANRPIGYKCGPYTLP
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------.....---....10----....--.----....20.....------.-----------------.---------------------.-----30-.------------.......40.---.--------.--------.---....50-------...-----..---.------------.---------.------------60-------.---------.-.-.-.....-70----------......--------.-..80.--.......90------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------AGECG---RV
P
V
D
-----
Q
V
A
L
--K----LAPCAAATQNP------R-----------------A---------------------A-----V
P
-
P
------------
N
C
C
A
Q
V
R
S
IG---R--------N--------
P
---
K
C
L
C
A
V
-------
M
L
S-----NT---A------------R---------S------------A--------G---------V-K-P-
A
V
A
M
T-I-----------
P
K
R
CAI--------A-NRPIG--YKCGPYTLP------------------------------------------------------------------------------------------------------------
32
SP3
88.25
23%
-128
- C6 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------
A
I
S
C
G
-----
Q
V
A
S
--
A
----
I
A
P
C
I
S
Y
A
R
G
Q
------
G
-----------------
S
---------------------
G
-----
P
S
-
A
------------
G
C
C
S
G
V
R
S
L
N
N
A
A
R
--------
T
--------
T
A
D
R
R
A
A
C
N
C
-------
L
K
N
-----
A
A
---
A
------------
G
---------
V
------------
S
--------
G
---------
L
-
N
-
A
-
G
N
A
A
S
-
I
-----------
P
S
K
C
G
V
--------
S
I
P
Y
T
I
S
TS
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------
15
HHSearch
72.22
32%
-98
- C6 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
---------------------------------------------------------------------------------------
T
C
G
-----
Q
V
S
S
--
S
----
L
A
P
C
I
P
Y
V
R
G
G
------------------------
G
---------------------
A
-----
V
P
-
P
------------
A
C
C
N
G
I
R
N
V
N
---
N
L
A
RT
T
P
D
R
Q
--------
A
---
A
C
N
C
---------
L
K
------
Q
L
---
S
------------
A
---------
S
------------
V
P-------
G
---------
V
-
N
-
P
-
N
N
A
A
A
-
L
-----------
P
G
K
C
G
V
--------
S
-
I
P
--------------------------------------------------------------------------------------------------------------------------
12
HHSearch
72.21
29%
-85
- C6 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
---------------------------------------------------------------------------------------
S
C
G
-----
Q
V
A
S
--
A
----
I
A
P
C
I
S
Y
A
R
G
Q
------
G
-----------------
S
---------------------
G
-----
P
S
-
A
------------
G
C
C
S
G
V
R
S
L
N
---
N
A
-------
A
RT
T
A
D
R
R
-
A
---
A
C
N
C
---------
L
K
------
N
A
---
A
------------
A
---------
G
------------
V
S-------
G
---------
L
-
N
-
A
-
G
N
A
A
S
-
I
-----------
P
S
K
C
G
V
--------
S
-
I
P
--------------------------------------------------------------------------------------------------------------------------
3
Fugue
71.96
21%
-109
- C6 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
-------------------------------------------------------------------------------
M
C
Y
PGQ
A
F
Q
V
P
AL
P
A
C
R
P
L
L
--
R
----
L
Q
C
N
G
S
--
Q
V
P
------------------------
E
---------------------
A
-----
V
L
-
R
------------
D
C
C
Q
Q
L
A
H
I
S
---
E
--------
W
--------
C
---
R
C
G
A
L
Y
-------
S
M
L
-----
D
S
----
M
Y
K
E
HGAFPRCR
R
---------
E
------------
V
--------
V
---------
K
-
L
-
T
-
A
A
S
I
T
-
A
-------------
V
C
R
L
P
I
V
VDASG
D
-
G
A
Y
V
C
--
K
D
V
A
A
Y
P
D
A
------------------------------------------------------------------------------------------------------------
1
Fugue
71.38
32%
-67
- C6 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------A
I
D
L
C
G
-------------
M
S
Q
D
--
E
----
L
N
E
C
K
P
A
V
S
K
E
------
N
-----------------
P
---------------------
T
-----
S
P
S
Q
------------
P
C
C
T
A
L
Q
H
A
-------------
D
--------
F
---
A
C
L
C
G
Y
-------
K
N
S
-----
P
W
---
L
------------
G
---------
S
------------
F
--------
G
---------
V
-
D
-
P
-
E
L
A
S
A
-
L
-----------
P
K
Q
C
G
L
--------
A
-
N
A
P
-----
T
C
------------------------------------------------------------------------------------------------------------------
27
HHSearch
67.43
20%
-129
- C6 -
1SM7
-
?
A:
[14-100]
-----------------------------------------------------------------------------------------------------
H
----
L
R
A
C
Q
Q
W
I
R
Q
Q
------
L
-----------------
A
G
S
P
F
S
E
NQWGPQQGP------
S
-----
L
R
-
E
------------
Q
C
C
N
E
L
Y
Q
E
-------------
D
--------
Q
---
V
C
V
C
P
T
-------
L
K
Q
-----
A
A
----------------
K
---------
S
------------
V
RVQ-----
G
QHGPFQST-
R
-
I
-
Y
-
Q
I
A
K
N
-
L
-----------
P
N
V
C
N
M
--------
K
-
Q
---------------------------------------------------------------------------------------------------------------------------
17
HHSearch
66.42
27%
-97
- C6 -
1T12
-
NLTP1_TOBAC
A:
[3-78]
---------------------------------------------------------------------------------------
T
C
G
-----
Q
V
T
S
--
N
----
L
A
P
C
L
A
Y
L
R
N
T
------
G
---------------------------------------------
P
L
-
G
------------
R
C
C
G
G
V
K
A
L
V
---
N
--------
S
A
RT
T
E
D
R
Q
I
---
A
C
T
C
---------
L
K
------
S
A
---
A
------------
G
---------
A
------------
I
S-------
G
---------
I
-
N
-
L
-
G
K
A
A
G
-
L
-----------
P
S
T
C
G
V
--------
N
-
I
P
--------------------------------------------------------------------------------------------------------------------------
26
HHSearch
65.96
25%
-111
- C6 -
1HSS
-
IAA1_WHEAT
A:
[16-106]
-----------------------------------------------------------------------------------------------------
A
----
L
P
A
C
R
P
L
L
R
L
Q
C
N
GS--
Q
VP---------------
E
---------------------
A
-----
V
L
-
R
------------
D
C
C
Q
Q
L
A
H
I
-------------
S
--------
E
---
W
C
R
C
G
A
-------
L
Y
S
-----
M
L
D
S
M
Y
------------
K
---------
E
------------
H
---------GAFPRCR
R
E
V
-
V
-
K
-
L
T
A
A
S
-
I
-----------
T
A
V
C
R
L
--------
P
-
I
V
V
D
------------------------------------------------------------------------------------------------------------------------
13
HHSearch
64.83
31%
-78
- C6 -
1SIY
-
NLTP1_VIGRR
A:
[2-78]
---------------------------------------------------------------------------------------
T
C
G
-----
Q
V
Q
G
--
N
----
L
A
Q
C
I
G
F
L
Q
K
G
------------------------
G
---------------------
V
-----
V
P
-
P
------------
S
C
C
T
G
V
K
N
I
L
---
N
SSRTTADR
R
--------
A
---
V
C
S
C
L
----------
K
-----
A
A
---
A
------------
G
---------
A
------------
V
R-------
G
---------
I
-
N
-
P
-
N
N
A
E
A
-
L
-----------
P
G
K
C
G
V
--------
N
-
I
P
--------------------------------------------------------------------------------------------------------------------------
28
HHSearch
64.01
19%
-91
- C6 -
1BEA
-
ITRF_MAIZE
A:
[16-109]
-----------------------------------------------------------------------------------------------------
P
----
L
P
S
C
R
W
Y
V
T
S
R
------
T
CGIG-------------
P
---------------------
R
LP
W
P
E
L
K
-
R
------------
R
C
C
R
E
L
A
D
I
-------------
P
--------
A
---
Y
C
R
C
T
A
-------
L
S
I
-----
L
M
---
D
------------
G
A
I
P
P
G
PDAQ
L
E
G
R
---------
L
E
D
LPGCP
R
E
---------
V
-
Q
-
R
-
G
F
A
A
T
-
L
VT---------
E
A
E
C
N
L
--------
A
-
T
I
--------------------------------------------------------------------------------------------------------------------------
38
SP3
63.38
18%
-107
* C6 *
1HYP
-
?
?:
[6-80]
------------------------------------------------------------------------------
P
S
C
P
-------------------
D
----
L
S
I
C
L
N
I
L
G
G
S
------
L
-----------------
G
---------------------
T
-----
V
--
D
------------
D
C
C
A
L
I
G
G
L
G
D
I
-
E
--------
A
--------
I
---
V
C
L
C
-----------------
I
Q
---
L
------------
R
---------
A
------------
L
--------
G
---------
I
L
N
-
L
-
N
R
N
L
Q
L
I
-----------
L
N
S
C
G
---------
R
-
S
Y
P
S
N
--
A
T
C
P
R
T
---------------------------------------------------------------------------------------------------------------
9
Fugue
63.00
17%
-97
- C6 -
1S6D
-
2SS8_HELAN
A:
[1-103]
----------------------------------------------------------------------------P
Y
G
R
G
R
---
T
E
S
G
C
-----
Y
Q
Q
M
--
E
E
A
EM
L
N
H
C
G
M
Y
L
M
K
N
------
L
-----------------
G
---------------------
E
-----
R
S
-
Q
VSPR
M
R
E
E
D
H
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Q
L
C
C
M
Q
L
K
N
L
-------------
D
--------
E
---
K
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M
C
P
A
-------
I
M
M
M
L
N
EP
M
W
---
I
------------
R
---------
M
------------
R
--------
D
---------
Q
-
V
-
M
-
S
M
A
H
N
-
L
-----------
P
I
E
C
N
L
--------
M
-
S
Q
------
P
C
Q
M
----------------------------------------------------------------------------------------------------------------
16
HHSearch
61.72
21%
-105
- C6 -
1BWO
2
NLTP1_WHEAT
A:
[2-78]
---------------------------------------------------------------------------------------
D
C
G
-----
H
V
D
S
--
L
----
V
R
P
C
L
S
Y
V
Q
G
G
------------------------
P
---------------------
G
-----
P
S
-
G
------------
Q
C
C
D
G
V
K
N
L
H
---
N
Q
ARS
Q
S
D
R
Q
--------
S
---
A
C
N
C
L
K
-------
G
I
A
-----------------------
R
---------
G
------------
I
H-------
N
---------
L
-
N
-
E
-
D
N
A
R
S
-
I
-----------
P
P
K
C
G
V
--------
N
-
L
P
--------------------------------------------------------------------------------------------------------------------------
31
HHSearch
61.25
22%
-104
- C6 -
1B1U
-
IAAT_ELECO
A:
[16-110]
-----------------------------------------------------------------------------------------------------
P
----
L
D
S
C
R
W
Y
V
S
T
R
T
CGVGP
R
-----------------
L
A
T
Q
------------------
E
-----
M
K
-
A
------------
R
C
C
R
Q
L
E
A
I
-------------
P
--------
A
---
Y
C
R
C
E
A
-------
V
R
I
-----
L
M
---
D
G
V
V
---------
T
---------
P
SG
Q
H
E
G
RLLQDL
P
--------
G
CP
R
Q
-----
V
Q
R
A
F
-
A
P
K
L
V
-
T
-----------
E
V
E
C
N
L
--------
A
-
T
I
H
G
------------------------------------------------------------------------------------------------------------------------
11
HHSearch
58.53
27%
-77
- C6 -
2RKN
2
DIRL1_ARATH
A:
[1-75]
---------------------------------------------------------------------------------
A
---
I
D
L
C
G
-----
M
S
Q
D
--
E
----
L
N
E
C
K
P
A
V
S
K
E
------
N
P----------------
T
---------------------
S
-----
P
S
-
Q
------------
P
C
C
T
A
L
Q
H
A
-------------
D
--------
F
---
A
C
L
C
G
Y
-------
K
N
S
-----
P
W
---
L
------------
G
---------
S
------------
F
--------
G
---------
V
-
D
-
P
-
E
L
A
S
A
-
L
-----------
P
K
Q
C
G
L
--------
A
-
N
A
P
-------------------------------------------------------------------------------------------------------------------------
29
HHSearch
58.50
18%
-86
- C6 -
1PSY
-
2SS_RICCO
A:
[17-116]
---------------------------------------------------------------------------------------
Q
C
R
-----
Q
E
V
Q
RK
D
----
L
S
S
C
E
R
Y
L
R
Q
S
------
S
-----------------
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
-----
Q
L
-
Q
------------
Q
C
C
N
Q
V
K
Q
V
-------------
R
--------
D
---
E
C
Q
C
E
A
-------
I
K
Y
-----
I
A
---
E
D
Q
I
Q
--------
Q
---------
G
QLHGEE------
S
--------
E
---------
R
-
V
-
A
-
Q
R
A
G
E
-
I
-----------
V
S
S
C
G
V
--------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
57.75
30%
-142
- C6 -
2DS2
-
?
B:
[6-63]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
-
R
------------
Q
C
C
N
Q
L
R
Q
V
-------------
D
--------
R
---
P
C
V
C
P
V
-------
L
R
Q
-----
A
A
---
Q
Q
V
L
Q
--------
R
Q
I-------
I
------------
Q
--------
G
P
Q
Q
L
R
----
R
-
L
-
F
-
D
A
A
R
N
-
L
-----------
P
N
I
C
N
I
--------
P
-
N
---------------------------------------------------------------------------------------------------------------------------
40
SP3
57.61
15%
-94
- C3 -
1GUY
1
MDH_CHLAA
A:
[1-306]
M
R
K
K
I
S
I
I
G
AG
F
V
G
S
T
T
A
H
W
L
A
A
K
EL
G
D
I
V
L
L
D
IVEG
V
P
Q
G
K
A
L
D
L
Y
E
A
SPIEG
F
D
V
R
V
T
G
T
NNYADTANSD
V
I
V
V
T
S
G
A
L
I
---
K
V
N
A
D
-----
I
T
R
A
--
C
----
I
S
Q
A
A
P
L
S
P
N
A
------
V
I
I
M
V-------------
N
---------------------
N
-----
P
L
-
D
------------
A
M
T
Y
L
A
A
E
V
S
---
G
--------
F
--------
P
KE-
R
V
I
G
Q
A
G
V
L
D
A
A
R
Y
R
T
-----
F
I
---
A
------------
M
---------
E
------------
A
--------
G
---------
V
-
S
-
V
E
D
V
Q
A
M
-
L
M
G
G
H
GDE
M
V
P
L
P
R
F
S
T
I
--------
S
-
G
I
P
V
-------
S
E
F
I
A
P
D
R
L
A
Q
I
V
E
R
T
R
K
G
G
G
E
I
V
N
L
L
K
TGSAY
Y
A
P
A
A
A
T
A
Q
M
V
E
A
V
L
K
DKK
R
V
M
P
V
AAYLTGQYGLNDIY
F
G
V
P
V
ILGAGGVE
K
I
L
E
L
PLN
E
E
E
M
A
L
L
N
A
S
A
K
A
V
R
A
T
L
D
T
L
6
Fugue
57.12
14%
-77
- C6 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
-----------------------------------------------------------------------GPMRRE
R
G
R
Q
G
---
D
S
S
S
C
-----
E
R
Q
V
--
D
R
VN-
L
K
P
C
E
Q
H
I
M
Q
R
------
I
MGEQEQYDSYDIRSTR
S
S
---------------------
D
-----
Q
Q
-
Q
------------
R
C
C
D
E
L
N
E
M
E
---
N
--------
T
--------
Q
---
G
C
M
C
E
A
-------
L
Q
Q
-----
I
M
---
E
N
Q
CDRLQDR---
Q
---------
M
------------
V
--------
Q
---------
Q
-
F
-
K
-
R
E
L
M
S
-
L
-----------
P
Q
Q
C
N
F
--------
R
-
A
P
Q
-----
R
C
D
L
D
V
S
G
GRCS--------------------------------------------------------------------------------------------------------
8
Fugue
56.71
17%
-59
- C6 -
1PSY
-
2SS_RICCO
A:
[1-125]
---------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
---
Q
E
V
Q
R
-----
K
-----
D
----
L
S
S
C
E
R
Y
L
R
Q
S
------
S
-----------------
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
-----
Q
L
-
Q
------------
Q
C
C
N
Q
V
K
Q
V
-------------
R
--------
D
---
E
C
Q
C
E
--------
A
I
K
-----
Y
I
---
A
------------
E
---------
D
------------
Q
--------
I
---------
Q
-
Q
-
G
-
Q
L
H
G
E
-
E
-----------
S
E
R
V
A
Q
--------
R
-
A
G
E
I
V
--
S
S
C
G
V
R
C
M
R
QTRTN-------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AGECGRV
P
V
D
Q
V
A
L
KLAPCAAATQNPRAAV
P
P
N
C
C
A
Q
V
R
S
IGRN
P
K
C
L
C
A
V
M
L
SNTARSAGVKP
A
V
A
M
TI
P
K
R
CAIANRPIGYKCGPYTLP
49
100.00
100%
-153
- C- -
M049
-
A:
[1-151]
A
G
E
C
G
R
V
P
V
D
Q
V
A
L
K
L
A
P
C
A
A
A
T
Q
N
P
R
A
A
V
P
P
N
C
C
A
Q
V
R
S
I
G
R
N
P
K
C
L
C
A
V
M
L
S
N
T
A
R
S
A
G
V
K
P
A
V
A
M
T
I
P
K
R
C
A
I
A
N
R
P
I
G
Y
K
C
G
P
Y
T
L
P
48
97.67
100%
-135
- C- -
M048
-
A:
[1-151]
A
G
E
C
G
R
V
P
V
D
Q
V
A
L
K
L
A
P
C
A
A
A
T
Q
N
P
R
A
A
V
P
P
N
C
C
A
Q
V
R
S
I
G
R
N
P
K
C
L
C
A
V
M
L
S
N
T
A
R
S
A
G
V
K
P
A
V
A
M
T
I
P
K
R
C
A
I
A
N
R
P
I
G
Y
K
C
G
P
Y
T
L
P
42
44.25
100%
-23
- C- -
M042
-
A:
[3-144]
A
G
E
C
G
R
V
P
V
D
Q
V
A
L
K
L
A
P
C
A
A
A
T
Q
N
P
R
A
A
V
P
P
N
C
C
A
Q
V
R
S
I
G
R
N
P
K
C
L
C
A
V
M
L
S
N
T
A
R
S
A
G
V
K
P
A
V
A
M
T
I
P
K
R
C
A
I
A
N
R
P
I
G
Y
K
C
G
P
Y
T
L
P
45
39.45
100%
1
- C- -
M045
-
A:
[6-142]
A
G
E
C
G
R
V
P
V
D
Q
V
A
L
K
L
A
P
C
A
A
A
T
Q
N
P
R
A
A
V
P
P
N
C
C
A
Q
V
R
S
I
G
R
N
P
K
C
L
C
A
V
M
L
S
N
T
A
R
S
A
G
V
K
P
A
V
A
M
T
I
P
K
R
C
A
I
A
N
R
P
I
G
Y
K
C
G
P
Y
T
L
P