@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 167_tV_ORYSA: (2014-05-02 )
DGAGECGATPPDKMALKLAPCASAAKDPKSTPSSGCCTAVHTIGKQSPKCLCAVMLSSTTRNAGIKPEVAITIPKRCNIADRPVGYKCGDYTLP
Atome Classification :
(20 SA)
-------.......---------------------..10.....--.--.----..20....---------------.-----------------..------.----------30--------------------.-----------------....---------------------....40....-------.-------.-------.-------.50-------......-----..60---------.------.----------.--------.----.---.-.----------..70.-------------.--......---80---..-...--....90...-----------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------DGAGECG---------------------ATP-PD
K
M
A
--
L
--
K
----LAPCASAA---------------K-----------------DP------K----------S---------------------T-----------------PSS
G
---------------------
C
C
T
A
V
H
T
I
GK-------Q-------S-------
P
-------
K
C
L
-------
C
A
V
M
L
S-----STT----------R------N----------A--------G----I---K-P----------
E
V
A
I
T-------------I--PKRCNI---A----DR-PVG--YKCGDYTLP-----------------------------------------------------------------------------------------------------------------------------
30
SP3
79.06
22%
-78
* C3 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
-----------------------------------
A
I
S
-
C
G
Q
V
A
--
S
--
A
----
I
A
P
C
I
S
Y
A
---------------
R
-----------------
G
Q
------
G
----------
S
---------------------
G
-----------------
P
S
A
G
---------------------
C
C
S
G
V
R
S
L
N
N
-------
A
-------
A
RT
T
A
D
--
R
-------
R
A
A
-------
C
N
C
L
K
N
-----
A
A
A
----------
G
------
V
----------
S
--------
G
----
L
---
N
-
A
----------
G
N
A
A
S
-------------
I
--
P
S
K
C
G
V
---
S
----
I
P
Y
T
I
S
TS
T
D
C
S
R
V
N
-------------------------------------------------------------------------------------------------------------------------------
1
Fugue
66.05
34%
-80
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------
A
I
D
L
C
G
---------------------
M
S
------
Q
--
D
--
E
----
L
N
E
C
K
P
A
V
---------------
S
-----------------
K
E
------
N
----------
P
---------------------
T
S----------------
P
S
Q
P
---------------------
C
C
T
A
L
Q
H
A
-----------------
D
-------
F
-------
A
C
L
-------
C
G
Y
K
N
S
-----
P
W
L
----------
G
------
S
----------
F
--------
G
----
V
---
D
-
P
----------
E
L
A
S
A
-------------
L
--
P
K
Q
C
G
L
---
A
----
N
A
-
P
-----
T
C
-----------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
65.70
19%
-91
- C3 -
1BEA
-
ITRF_MAIZE
A:
[16-109]
-------------------------------------------------
P
----
L
P
S
C
R
W
Y
V
---------------
T
-----------------
S
R
TCGI--
G
----------
P
R--------------------
L
P
W
P
E
-------------
L
K
R
R
---------------------
C
C
R
E
L
A
D
I
-----------------
P
-------
A
-------
Y
C
R
-------
C
T
A
L
S
I
-----
L
M
D
G
A
I
-------
P
P
G
PDAQ
L
E
G
R
-------
L
E
D
LPGCP
R
E
----
V
---
Q
-
R
----------
G
F
A
A
T
-------------
L
VT
E
A
E
C
N
L
---
A
----
T
I
--------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
64.61
23%
-79
- C3 -
1T12
-
NLTP1_TOBAC
A:
[2-78]
------------------------------------
I
T
-
C
G
Q
V
T
--
S
--
N
----
L
A
P
C
L
A
Y
L
---------------
R
-----------------
N
T
------
G
--------------------------------------------------
P
L
G
R
---------------------
C
C
G
G
V
K
A
L
V
N
-------
S
-------
A
-------
R
T
T
E
D
R
Q
I
A
C
T
-------
C
--
L
K
S
-----
A
-
A
----------
G
------
A
----------
I
S-------
G
----
I
---
N
-
L
----------
G
K
A
A
G
-------------
L
--
P
S
T
C
G
V
---
N
----
I
P
--------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
64.38
19%
-78
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
------------------------------------
I
T
-
C
G
Q
V
S
--
S
--
S
----
L
A
P
C
I
P
Y
V
---------------
R
-----------------
G
G
-----------------
G
---------------------
A
-----------------
V
P
P
A
---------------------
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
-------
Q
-------
A
-------
A
C
N
-------
C
--
L
K
Q
-----
L
-
S
----------
A
------
S
----------
V
P-------
G
----
V
---
N
-
P
----------
N
N
A
A
A
-------------
L
--
P
G
K
C
G
V
---
S
----
I
P
--------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
62.55
17%
-70
- C3 -
1PSY
-
2SS_RICCO
A:
[1-125]
-A
E
F
M
E
S
K
G
E
R
E
G
S
---------------------
S
S
Q
-
Q
C
R
Q
E
--
V
--
Q
RKD-
L
S
S
C
E
R
Y
L
---------------
R
-----------------
Q
S
------
S
----------
S
---------------------
R
-----------------
R
S
T
G
EEVLRMPGDENQQQESQQL
Q
Q
C
C
N
Q
V
K
Q
V
-----------------
R
-------
D
-------
E
C
Q
-------
C
E
A
I
K
Y
-----
I
A
E
----------
D
------
Q
----------
I
--------
Q
----
Q
---
G
-
Q
LHGEE
S
E
R
V
A
Q
R
A
G
E
-------------
I
--
V
S
S
C
G
V
---
R
----
C
M
-
R
Q
T
--
R
T
N
-----------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
61.47
28%
-62
- C3 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
------------------------------------
I
S
-
C
G
Q
V
A
--
S
--
A
----
I
A
P
C
I
S
Y
A
---------------
R
-----------------
G
Q
------
G
----------
S
---------------------
G
-----------------
P
S
A
G
---------------------
C
C
S
G
V
R
S
L
N
N
-------
A
-------
A
RT
T
A
D
R
R
A
-------
A
C
N
-------
C
--
L
K
N
-----
A
-
A
----------
A
------
G
----------
V
S-------
G
----
L
---
N
-
A
----------
G
N
A
A
S
-------------
I
--
P
S
K
C
G
V
---
S
----
I
P
--------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
61.11
15%
-93
- C3 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
---GPMR
R
E
R
G
R
Q
G
---------------------
D
S
S
-
S
C
E
R
Q
--
V
--
D
R
VN-
L
K
P
C
E
Q
H
I
---------------
M
Q
R
I
MGEQEQYDSYDIRS
T
R
------
S
----------
S
---------------------
D
-----------------
Q
Q
Q
R
---------------------
C
C
D
E
L
N
E
M
-
E
-------
N
-------
T
-------
Q
-------
G
C
M
-------
C
E
A
L
Q
Q
-----
I
M
E
N
Q
CDRLQDR-
Q
------
M
----------
V
--------
Q
----
Q
---
F
-
K
----------
R
E
L
M
S
-------------
L
--
P
Q
Q
C
N
F
---
R
----
A
P
-
Q
-----
R
C
D
L
D
V
S
G
GRCS-------------------------------------------------------------------------------------------------------------------------
37
SP3
60.96
19%
-65
- C4 -
1B3T
-
EBNA1_EBVB9
A:
[1-147]
-KGGWFG
K
H
R
G
Q
G
G
---------------------
S
N
P
K
F
E
N
I
A
--
E
--
G
----
L
R
A
L
L
A
R
S
---------------
H
-----------------
V
E
------
R
----------
T
---------------------
T
-----------------
D
E
G
T
---------------------
W
V
A
G
V
-----------------------------------------------
F
V
Y
G
G
-----
S
K
T
----------
S
------
L
----------
Y
--------
N
----
L
---
R
-
R
----------
G
T
A
L
A
-------------
I
--
P
Q
-
C
R
L
T
P
L
S
----
R
L
-
P
F
G
--
M
A
P
G
P
G
P
Q
P
GPLRESI
V
C
Y
F
M
V
F
L
QT
H
I
F
A
E
V
L
K
D
A
I
K
D
L
V
M
TKPAPTCN
I
R
V
T
V
C
S
F
DDGVDLP---------------------------------------------------------------------
12
HHSearch
60.72
20%
-80
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[2-78]
-------------------------------------
D
-
C
G
H
V
D
--
S
--
L
----
V
R
P
C
L
S
Y
V
---------------
Q
-----------------
G
G
-----------------
P
---------------------
G
-----------------
P
S
G
Q
---------------------
C
C
D
G
V
K
N
L
H
N
Q
AR----
S
Q
S
D
R
---
Q
-------
S
-------
A
C
N
-------
C
L
K
G
I
A
-----
R
-------------------
G
----------
I
H-------
N
----
L
---
N
-
E
----------
D
N
A
R
S
-------------
I
--
P
P
K
C
G
V
---
N
----
L
P
--------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
59.28
17%
-103
- C3 -
1B1U
-
IAAT_ELECO
A:
[16-110]
-------------------------------------------------
P
----
L
D
S
C
R
W
Y
V
---------------
S
-----------------
T
R
T
CGVGP
R
----------
L
---------------------
A
T
Q
E
--------------
M
K
A
R
---------------------
C
C
R
Q
L
E
A
I
-----------------
P
-------
A
-------
Y
C
R
-------
C
E
A
V
R
I
-----
L
M
D
----------
G
V
V
T
PS-
G
Q
H
E
G
RLLQDL
P
--------
G
CP
R
Q
V
Q
--
R
A
F
----------
A
P
K
L
V
-------------
T
--
E
V
E
C
N
L
---
A
----
T
I
-
H
G
-----------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
59.16
23%
-71
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[2-78]
-------------------------------------
T
-
C
G
Q
V
Q
--
G
--
N
----
L
A
Q
C
I
G
F
L
---------------
Q
-----------------
K
G
-----------------
G
---------------------
V
-----------------
V
P
P
S
---------------------
C
C
T
G
V
K
N
I
L
N
-------
S
SRTTADR
R
-------
A
-------
V
C
S
-------
C
L
--
K
A
------
A
A
----------
G
------
A
----------
V
R-------
G
----
I
---
N
-
P
----------
N
N
A
E
A
-------------
L
--
P
G
K
C
G
V
---
N
----
I
P
--------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
54.94
15%
-127
- C3 -
1HYP
-
?
?:
[6-80]
----------
P
S
C
P
---------------------
D
------------------
L
S
I
C
L
N
I
L
---------------
G
-----------------
G
-------
S
----------
L
---------------------
G
-----------------
T
V
D
D
---------------------
C
C
A
L
I
G
G
L
G
D
I
------
E
-------
A
-------
I
-------
V
C
L
-------
C
I
Q
L
R
A
------------------------------------
L
--------
G
----
I
L--
N
-
L
----------
N
R
N
L
Q
L
------------
I
--
L
N
S
C
G
----
R
----
S
Y
-
P
S
N
--
A
T
C
P
R
T
--------------------------------------------------------------------------------------------------------------------------------
6
Fugue
54.79
18%
-88
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------
P
Y
G
R
G
R
---------------------
T
E
S
-
G
C
Y
Q
Q
--
M
--
E
E
A
EM
L
N
H
C
G
M
Y
L
---------------
M
-----------------
K
N
------
L
----------
G
---------------------
E
-----------------
R
S
Q
V
SPR
M
R
E
E
D
H
K
Q
L
---------
C
C
M
Q
L
K
N
L
-----------------
D
-------
E
-------
K
C
M
-------
C
P
A
I
M
M
M
L
N
EP
M
W
I
----------
R
------
M
----------
R
--------
D
----
Q
---
V
-
M
----------
S
M
A
H
N
-------------
L
--
P
I
E
C
N
L
---
M
----
S
Q
-------
P
C
Q
M
---------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
54.01
19%
-93
- C3 -
1HSS
-
IAA1_WHEAT
A:
[16-105]
-------------------------------------------------
A
----
L
P
A
C
R
P
L
L
---------------
R
-----------------
L
Q
------
C
N
GSQ------
V
P
E
-------------------
A
-----------------
V
L
R
D
---------------------
C
C
Q
Q
L
A
H
I
-----------------
S
-------
E
-------
W
C
R
-------
C
G
A
L
Y
S
-----
M
L
D
----------
S
M
Y
K
---
E
----------
H
GAFPRCR
R
E
----
V
---
V
-
K
----------
L
T
A
A
S
-------------
I
--
T
A
V
C
R
L
---
P
----
I
V
-
V
------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
52.89
28%
-86
- C3 -
1N89
1
NLT2G_WHEAT
A:
[5-65]
----------------------------------------------
S
--
Q
----
L
A
V
C
A
S
A
I
---------------
L
-----------------
S
G
-----------------
A
---------------------
K
-----------------
P
S
G
E
---------------------
C
C
G
N
L
R
A
Q
-----------------
Q
---------------
G
C
F
-------
C
Q
Y
A
K
D
-----
P
T
Y
----------
G
------
Q
-------------------
Y
----
I
---
R
-
S
----------
P
H
A
R
D
-------------
T
--
L
T
S
C
G
L
---
A
----
V
P
--------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
52.71
16%
-80
- C3 -
1PSY
-
2SS_RICCO
A:
[16-116]
------------------------------------
Q
Q
-
C
R
Q
E
V
--
Q
RK
D
----
L
S
S
C
E
R
Y
L
---------------
R
-----------------
Q
S
------
S
----------
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
-----------------
Q
L
Q
Q
---------------------
C
C
N
Q
V
K
Q
V
-----------------
R
-------
D
-------
E
C
Q
-------
C
E
A
I
K
Y
-----
I
A
E
D
Q
I
Q
Q
G
QLHG
E
------
E
----------
S
--------
E
----
R
---
V
-
A
----------
Q
R
A
G
E
-------------
I
--
V
S
S
C
G
V
------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
51.72
16%
-101
- C3 -
1HYP
-
HPSE_SOYBN
A:
[10-79]
-------------------------------------------------
D
----
L
S
I
C
L
N
I
L
---------------
G
-----------------
G
-------
S
----------
L
---------------------
G
-----------------
T
V
D
D
---------------------
C
C
A
L
I
G
G
L
G
D
-------
I
E
------
A
-------
I
-------
V
C
L
-------
C
I
Q
L
R
A
------------------
L
------
G
----------
I
-------------
L
---
N
-
L
----------
N
R
N
L
Q
-------------
L
I
-
L
N
S
C
G
R
--------
S
Y
-
P
S
N
--
A
T
C
P
R
---------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
49.66
14%
-95
- C3 -
1W2Q
-
CONG_ARAHY
A:
[15-112]
-------------------------------------
S
-
C
E
R
Q
V
D
R
V
--
N
----
L
K
P
C
E
Q
H
I
---------------
M
-----------------
Q
R
------
I
----------
M
---------------------
G
EQEQYDSYDIRSTR
S
S
D
Q
Q
Q
R
---------------------
C
C
D
E
L
N
E
M
E
--------
N
-------
T
-------
Q
-------
G
C
M
-------
C
E
A
L
Q
Q
-----
I
M
E
----------
N
Q
CD---
R
----------
L
Q-------
D
RQ--
M
V
Q
Q
F
-
K
----------
R
E
L
M
S
-------------
L
--
P
Q
Q
C
N
F
---
R
--------------------------------------------------------------------------------------------------------------------------------------------------
35
SP3
49.49
19%
-51
- C4 -
1GUY
1
MDH_CHLAA
A:
[1-306]
M
R
K
K
I
S
I
I
G
A
G
F
V
G
S
T
T
A
H
W
L
A
A
K
EL
G
D
I
V
L
L
D
IV
E
G
V
-
P
Q
G
K
A
--
L
--
D
----
L
Y
E
A
S
P
I
E
G
F
D
V
R
V
T
G
T
NNYADT
A
-----------------
N
S
------
D
V
I
V
V
TSGAL
I
K
---------------------
V
-----------------
N
A
D
I
---------------------
T
R
A
C
I
S
Q
A
A
P
-------
L
-------
S
-------
P
-------
N
A
V
I
I
M
VNNP
L
D
A
M
T
Y
-----
L
A
A
----------
E
------
V
----------
S
--------
G
----
F
---
P
-
K
----------
E
R
V
I
G
Q
A
G
V
L
D
A
A
R
Y
R
T
F
I
--
A
M
E
A
G
V
---
S
VED
V
Q
A
-
M
L
M
--
G
G
H
G
D
E
M
V
P
L
PRFSTISGIP
V
S
E
F
I
A
P
D
R
L
A
Q
I
V
E
R
T
R
K
G
G
G
E
I
V
N
L
L
K
TGSAY
Y
A
P
A
A
A
T
A
Q
M
V
E
A
V
L
K
DKK
R
V
M
P
V
AAYLTGQYGLNDIY
F
G
V
P
V
ILGAGGVE
K
I
L
E
L
PLN
E
E
E
M
A
L
L
N
A
S
A
K
A
V
R
A
T
L
D
T
L
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90...
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
DGAGECGATPPD
K
M
A
L
K
LAPCASAAKDPKSTPSS
G
C
C
T
A
V
H
T
I
GKQS
P
K
C
L
C
A
V
M
L
SSTTRNAGIKP
E
V
A
I
TIPKRCNIADRPVGYKCGDYTLP
42
93.18
100%
-113
- C- -
M042
-
A:
[1-173]
D
G
A
G
E
C
G
A
T
P
P
D
K
M
A
L
K
L
A
P
C
A
S
A
A
K
D
P
K
S
T
P
S
S
G
C
C
T
A
V
H
T
I
G
K
Q
S
P
K
C
L
C
A
V
M
L
S
S
T
T
R
N
A
G
I
K
P
E
V
A
I
T
I
P
K
R
C
N
I
A
D
R
P
V
G
Y
K
C
G
D
Y
T
L
P
45
81.07
100%
-95
- C- -
M045
-
A:
[1-139]
D
G
A
G
E
C
G
A
T
P
P
D
K
M
A
L
K
L
A
P
C
A
S
A
A
K
D
P
K
S
T
P
S
S
G
C
C
T
A
V
H
T
I
G
K
Q
S
P
K
C
L
C
A
V
M
L
S
S
T
T
R
N
A
G
I
K
P
E
V
A
I
T
I
P
K
R
C
N
I
A
D
R
P
V
G
Y
K
C
G
D
Y
T
L
P
40
31.23
100%
26
- C- -
M040
-
A:
[2-118]
D
G
A
G
E
C
G
A
T
P
P
D
K
M
A
L
K
L
A
P
C
A
S
A
A
K
D
P
K
S
T
P
S
S
G
C
C
T
A
V
H
T
I
G
K
Q
S
P
K
C
L
C
A
V
M
L
S
S
T
T
R
N
A
G
I
K
P
E
V
A
I
T
I
P
K
R
C
N
I
A
D
R
P
V
G
Y
K
C
G
D
Y
T
L
P