@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-06 )
QQIQDFIDCLNVIIYFSSCIGYIDGHVREPTWGCCMGVHELNRLVKQDRDAQKICQCIELIAAVDDPPFVLANIDALPSKCQTHLSFPISVKKNCSEVQ
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....---------..---------..10..--..--....20...----.----.------.-----------------.----------------.--------30----------....----..-----------...40....--.-----------...50........60...------.----.--------------.----------.----.-----------70---------.......--..80.....--------------...90........--------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------QQIQD---------FI---------DCLNVI--IY--FSSCIGYID----G----H------V-----------------R----------------E--------P-----------TWGC----CM-----------GVHELNRLV--K-----------QDRDAQKICQCIELIAAV------D----D--------------P----------P----F-----------V----------LANIDAL--PSKCQTHLS--------------FPISVKKNCSEVQ--------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
93.48
32%
-129
- C3 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
---------
S
C
G
Q
V
A
--
S
A
--
I
A
P
C
I
S
Y
A
R
----
G
----
Q
------
G
-----------------
S
----------------
G
--------
P
-----------
S
A
G
C
----
C
S
-----------
G
V
R
S
L
N
N
A
A
--
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-------
G
----
V
--------------
S
----------
G
----
L
-----------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
--------------
Y
T
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
11
SP3
92.83
30%
-138
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
---------
S
C
G
Q
V
A
--
S
A
--
I
A
P
C
I
S
Y
A
R
----
G
----
Q
------
G
-----------------
S
----------------
G
--------
P
-----------
S
A
G
C
----
C
S
-----------
G
V
R
S
L
N
N
A
A
--
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
-----------
V
--------------
S
----------
G
----
L
-----------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
--------------
Y
T
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
91.73
32%
-141
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
---------
T
C
G
Q
V
S
--
S
S
--
L
A
P
C
I
P
Y
V
R
----
G
----
G
------------------------
G
----------------
A
--------
V
-----------
P
P
A
C
----
C
N
-----------
G
I
R
N
V
N
N
L
A
--
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
S
A
S
-----------
V
--------------
P
----------
G
----
V
-----------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
--------------
Y
K
I
S
A
S
T
N
C
A
T
V
K
--------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
90.66
30%
-163
- C3 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
---------
T
C
G
Q
V
T
--
S
N
--
L
A
P
C
L
A
Y
L
R
----
N
----
T
------
G
-------------------------------------------
P
-----------
L
G
R
C
----
C
G
-----------
G
V
K
A
L
V
N
S
A
--
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
A
G
A
-----------
I
--------------
S
----------
G
----
I
-----------
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
--------------
Y
K
I
S
P
S
T
D
C
S
K
V
Q
--------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
89.45
32%
-133
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
---------
D
C
G
H
V
D
--
S
L
--
V
R
P
C
L
S
Y
V
Q
----
G
----
G
------------------------
P
----------------
G
--------
P
-----------
S
G
Q
C
----
C
D
-----------
G
V
K
N
L
H
N
Q
A
--
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
A
R
-------
G
----
I
--------------
H
----------
N
----
L
-----------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
--------------
Y
T
I
S
L
N
I
D
C
S
R
V
---------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
86.53
25%
-126
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
---------
T
C
G
Q
V
Q
--
G
N
--
L
A
Q
C
I
G
F
L
Q
----
K
----
G
------------------------
G
----------------
V
--------
V
-----------
P
P
S
C
----
C
T
-----------
G
V
K
N
I
L
N
S
S
--
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
A
A
A
G
-------
A
----
V
--------------
R
----------
G
----
I
-----------
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
--------------
Y
K
I
S
T
S
T
N
C
N
S
I
N
--------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
60.55
17%
-174
- C3 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
--
L
P
S
C
R
W
Y
V
T
S
R
TC
G
----
I
------
G
-----------------
P
----------------
R
--------
L
P
W
P
E
L
------
K
R
R
C
----
C
R
-----------
E
L
A
D
I
---------------------
P
A
Y
C
R
C
T
A
L
S
I
L
M
D
G
------
A
----
I
--------------
P
P
G
PDAQ----
L
E
G
R
-
L
-----------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
59.62
19%
-160
- C3 -
1SM7
-
?
A:
[14-100]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
--
L
R
A
C
Q
Q
W
I
R
----
Q
----
Q
LAG
S
--
P
-----------------
F
S
E
NQWGPQQGP-----
S
--------
L
-----------
R
E
Q
C
----
C
N
-----------
E
L
Y
Q
E
---------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
A
K
S
------
V
----
R
VQGQH---------
G
----------
P
----
F
QST
R
-------
I
----------
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
57.88
21%
-121
- C3 -
1PSY
-
2SS_RICCO
A:
[17-121]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
C
R
Q
E
V
QR
K
D
--
L
S
S
C
E
R
Y
L
R
----
Q
----
S
S
S
R
R
--
S
T
----------------
G
EEVLRMPGDENQQQES
Q
--------
Q
-----------
L
Q
Q
C
----
C
N
-----------
Q
V
K
Q
V
---------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
A
E
D
------
Q
----
I
Q
Q
G
QL---------
H
----------
G
EE
S
E
R
-----------
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
--------------
C
M
R
Q
-----------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
53.85
15%
-130
* C3 *
1B1U
-
IAAT_ELECO
A:
[15-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
--
L
D
S
C
R
W
Y
V
S
----
T
R
T
CG
V
------
G
-----------------
P
----------------
R
LA
T
Q
E
---
M
-----------
K
A
R
C
----
C
R
-----------
Q
L
E
A
I
---------------------
P
A
Y
C
R
C
E
A
V
R
I
L
M
D
G
------
V
----
V
T
PSG
Q
H
E
G
RLLQDL
P
----------
G
CP--
R
-----------
Q
V
Q
R
A
------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
--------------
H
--------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
53.62
14%
-145
- C3 -
1W2Q
-
CONG_ARAHY
A:
[23-120]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
--
L
K
P
C
E
Q
H
I
M
----
Q
----
R
I
MGEQE
Q
-----------------
Y
----------------
D
--------
S
YDIRSTR
S
S
D
Q
Q
Q
R
C
----
C
D
-----------
E
L
N
E
M
E
-------------------
N
T
Q
G
C
M
C
E
A
L
Q
Q
I
M
E
N
------
Q
----
C
--------------
D
RLQ-------
D
----
R
QMV
Q
-------
Q
F
---------
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
QR------------
C
D
L
D
-----------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
52.99
16%
-149
- C3 -
2LVF
-
?
A:
[16-101]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
M
--
L
S
H
C
R
M
Y
M
R
Q
Q
M
E
E
----
S
------
T
Y----------------
Q
----------------
T
MPRRGMEP
H
-----------
M
S
E
C
----
C
E
-----------
Q
L
E
G
M
---------------------
D
E
S
C
R
C
E
G
L
R
M
M
M
R
M
M
Q
Q
K
EM
Q
----
P
--------------
R
----------
G
E
Q
M
R
R
-----------
M
----------
M
R
L
A
E
N
I
--
P
S
R
C
N
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
50.93
16%
-67
- C3 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
---------
Q
C
R
Q
E
V
--
Q
R
KD
L
S
S
C
E
R
Y
L
R
----
Q
----
S
------
S
-----------------
S
----------------
R
--------
R
-----------
S
T
G
E
----
E
V
LRMPGDENQQQ
E
S
Q
Q
L
Q
Q
C
C
--
N
-----------
Q
V
K
Q
V
R
D
E
C
Q
C
E
A
I
K
Y
I
A
------
E
----
D
--------------
Q
----------
I
----
Q
Q
G
QLHGEE
S
E
R
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
C
M
--------------
R
Q
T
R
T
N
---------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
49.42
14%
-80
- C3 -
1UG7
-
AIDA_MOUSE
A:
[1-128]
--------------------------------------------------------------------------------------------------------------------------------------------------GSSGSSGMSE
V
T
R
S
L
L
Q
R
W
G
A
S
L
R
R
G
A
D
F
D
S
---------
W
G
---------
Q
L
V
E
A
I
--
D
E
--
Y
Q
I
L
A
R
H
L
Q
----
K
----
E
------
A
-----------------
Q
----------------
A
--------
Q
-----------
H
--------------------
N
N
S
E
F
T
--
E
--
E
-----------
Q
K
K
T
I
G
K
I
A
T
C
L
E
L
R
S
A
A
------
L
----
Q
STQSQ---------
E
----------
E
----
F
-----------
K
----------
L
E
D
L
K
K
L
--
E
P
I
L
K
N
I
L
T
--------------
Y
N
K
E
F
P
F
D
V
Q
P
I
S
GPSSG---------------------------------------------------------------------------------------------------------------------------------
13
SP3
48.50
9%
-80
- C3 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
---------
A
------------------
G
S
--
V
V
D
A
L
R
A
V
R
----------------
N
-----------------
A
----------------
A
--------
P
-----------
D
L
P
C
E
V
E
-
V
D
-----------
S
L
E
Q
L
D
A
V
L
--
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
A
P
T
------
V
M
L
E
S
S
--------------
G
----------
G
----
L
-----------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
-----------------
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M------------------------------------------------------------------------------------------------------------------------------
15
SP3
47.46
10%
-85
- C3 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
---------
A
------------
G
S
V
V
--
D
A
--
L
R
A
V
R
N
A
-----------------------------------------------------
A
--------
P
-----------
D
L
P
C
E
V
E
-
V
D
-----------
S
L
E
Q
L
D
A
V
L
--
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
A
P
T
------
V
M
L
E
S
S
--------------
G
----------
G
----
L
-----------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
-----------------
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M------------------------------------------------------------------------------------------------------------------------------
4
Fugue
46.63
11%
-76
- C3 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------GPMRRER
G
R
Q
G
D
---------
S
S
---------
S
C
E
R
Q
V
D
R
V
N
--
L
K
P
C
E
Q
H
I
M
----
Q
----
R
------
I
MGEQEQYDSYDIRSTR
S
S
----------------
D
--------
Q
-----------
Q
Q
R
C
----
C
D
-----------
E
L
N
E
M
E
N
T
Q
GC
M
-----------
C
E
A
L
Q
Q
I
M
E
N
Q
C
D
R
L
Q
D
R
------
Q
----
M
--------------
V
----------
Q
----
Q
-----------
F
----------
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
--------------
Q
R
C
D
L
D
V
S
G
G
R
C
S
--------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
45.87
15%
-107
- C3 -
2RKN
2
DIRL1_ARATH
A:
[2-75]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
---------
L
C
G
M
S
Q
--
D
E
--
L
N
E
C
K
P
A
V
S
----
K
----
E
------
N
-----------------
P
T---------------
S
--------
P
-----------
S
Q
P
C
----
C
T
-----------
A
L
Q
H
A
---------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
-----------
S
--------------
F
----------
G
----
V
-----------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
--------------
P
--------------------------------------------------------------------------------------------------------------------------------------------------
19
SP3
41.54
7%
-86
- C3 -
1A0P
-
?
?:
[3-292]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------Q
D
L
A
R
I
E
Q
F
L
D
---------
A
L
W
L
E
KNLA
E
N
T
L
N
A
Y
R
--
R
D
--
L
S
M
M
V
E
W
L
H
----
H
----
R
------
G
-----------------
L
----------------
T
--------
L
-----------
A
T
A
Q
----
S
D
-----------
D
L
Q
A
L
L
A
E
R
--
L
-----------
S
S
A
R
L
L
S
A
V
R
R
L
F
Q
Y
L
Y
R
------
E
----
K
--------------
F
REDDPSAHLK
D
----
L
-----------
S
----------
E
A
Q
V
E
R
L
--
L
Q
A
P
L
I
D
Q
P
L
E
L
R
D
K
A
M
L
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V
L
Y
A
T
G
L
R
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S
-
E
L
V
G
L
T
MSDISLRQG
V
V
R
V
I
G
KGNK
E
R
L
V
P
LG
E
E
A
V
Y
W
L
E
T
Y
L
E
HG
R
P
W
L
L
N
GVSIDVLFPSQRAQQMT
R
Q
T
F
W
H
R
I
K
H
Y
A
V
L
A
GIDSEKLS
P
H
V
L
R
H
A
F
A
T
H
L
L
N
HGADLRVVQMLLSDLS
T
T
Q
I
Y
T
H
V
A
T
E
R
L
R
Q
L
H
Q
20
SP3
39.87
9%
-63
- C3 -
1O4U
-
?
A:
[1-273]
----------------------M
E
K
I
L
D
L
L
M
S
F
V
K
E
D
E
GKLDLASFPLRN
T
T
A
G
A
H
L
L
L
KT
E
N
V
V
A
S
G
I
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V
S
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M
F
L
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M
G
L
L
S
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F
NVEDG
E
Y
L
E
G
TGVI
G
E
I
E
G
N
T
Y
K
L
L
V
A
E
R
T
L
L
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L
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V
M
F
S
V
A
T
T
T
R
R
F
A
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L
KH
A
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A
A
T
RKILPGL
G
V
L
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A
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V
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GGDC
V
M
I
K
D
N
H
L
K
M
---------
Y
G
---------
S
A
E
R
A
V
--
Q
E
--
V
R
-----------------------
K
-----------------
I
----------------
I
--------
P
-----------
F
T
T
K
I
E
V
E
V
E
-----------
N
L
E
D
A
L
R
A
V
--
E
A
GAD
I
V
M
L
D
NL
S
P
E
E
V
K
D
I
S
R
R
I
K
D
I
N
P
N
------
V
----
I
V
E
V
S
----------
G
----------
G
----
I
-----------
T
----------
E
E
N
V
S
L
Y
---
D
F
E
T
V
D
V
-----------------
I
S
S
S
R
L
T
L
Q
E
V
F
V
D
L
S
L
E
I
Q
R----------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70........80........90........
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
QQIQDFIDCLNVIIYFSSCIGYIDGHVREPTWGCCMGVHELNRLVKQDRDAQKICQCIELIAAVDDPPFVLANIDALPSKCQTHLSFPISVKKNCSEVQ
44
45.62
100%
17
- C- -
M044
-
A:
[6-99]
Q
Q
I
Q
D
F
I
D
C
L
N
V
I
I
Y
F
S
S
C
I
G
Y
I
D
G
H
V
R
E
P
T
W
G
C
C
M
G
V
H
E
L
N
R
L
V
K
Q
D
R
D
A
Q
K
I
C
Q
C
I
E
L
I
A
A
V
D
D
P
P
F
V
L
A
N
I
D
A
L
P
S
K
C
Q
T
H
L
S
F
P
I
S
V
K
K
N
C
S
E
V
Q
45
41.90
100%
17
- C- -
M045
-
A:
[6-99]
Q
Q
I
Q
D
F
I
D
C
L
N
V
I
I
Y
F
S
S
C
I
G
Y
I
D
G
H
V
R
E
P
T
W
G
C
C
M
G
V
H
E
L
N
R
L
V
K
Q
D
R
D
A
Q
K
I
C
Q
C
I
E
L
I
A
A
V
D
D
P
P
F
V
L
A
N
I
D
A
L
P
S
K
C
Q
T
H
L
S
F
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I
S
V
K
K
N
C
S
E
V
Q