@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-06 )
ISCTEAVAAMNPCLPFLIGAQASPVAPCCLAVQNVNQEASTKEIRRELCDCFKKAGPALGVKPDKAKQLPDLCHVQVPVPIDPTIDCSKVTEDIAW
Atome Classification :
(20 SA)
---------------..----......--.10.......----.--------20-----.----.-----------.-----------.---------------------.....30....---.---...40........50..-..-....-----60--------.--------.---------------.----------......---70--------.........80........90.....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------IS----CTEAVA--AMNPCLPFLI----G--------A------Q----A-----------S-----------P---------------------VAPCCLAVQNV---N---QEASTKEIRRELCDCFK-KA-GPAL-----G---------V--------K---------------P----------DKAKQL---P---------DLCHVQVPVPIDPTIDCSKVTEDIAW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
89.99
38%
-127
- C4 -
1T12
-
NLTP1_TOBAC
A:
[2-91]
---------------
I
T
----
C
G
Q
V
T
S
--
N
L
A
P
C
L
A
Y
L
R
----
N
--------
T
------
G
----------------------------
P
---------------------
L
G
R
C
C
G
G
V
K
A
L
---
V
---
N
S
A
R
T
T
E
D
R
Q
I
A
C
T
C
L
K
-
S
A
-
A
G
A
I
S----
G
---------
I
--------
N
---------------
L
----------
G
K
A
A
G
L
---
P
---------
S
T
C
G
V
N
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
89.27
35%
-104
- C4 -
1AFH
-
NLTP_MAIZE
A:
[2-93]
---------------
I
S
----
C
G
Q
V
A
S
--
A
I
A
P
C
I
S
Y
A
R
----
G
--------
Q
------
G
----
S
-----------
G
-----------
P
---------------------
S
A
G
C
C
S
G
V
R
S
L
---
N
---
N
A
A
R
T
T
A
D
R
R
A
A
C
N
C
L
K
-
N
A
-
A
A
G
V
S----
G
---------
L
--------
N
---------------
A
----------
G
N
A
A
S
I
---
P
---------
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
SP3
86.26
33%
-122
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
--------------A
I
S
----
C
G
Q
V
A
S
--
A
I
A
P
C
I
S
Y
A
R
----
G
--------
Q
------
G
----
S
-----------
G
-----------
P
---------------------
S
A
G
C
C
S
G
V
R
S
L
---
N
---
N
A
A
R
T
T
A
D
R
R
A
A
C
N
C
L
K
-
N
A
-
A
A
G
V
S----
G
---------
L
--------
N
---------------
A
----------
G
N
A
A
S
I
---
P
---------
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
84.72
32%
-118
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[2-92]
---------------
I
T
----
C
G
Q
V
S
S
--
S
L
A
P
C
I
P
Y
V
R
----
G
--------
G
-----------
G
-----------
A
-----------
V
---------------------
P
P
A
C
C
N
G
I
R
N
V
---
N
---
N
L
A
R
T
T
P
D
R
Q
A
A
C
N
C
L
K
-
Q
L
-
S
A
S
V
P----
G
---------
V
--------
N
---------------
P
----------
N
N
A
A
A
L
---
P
---------
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
84.30
29%
-111
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
---------------
M
T
----
C
G
Q
V
Q
G
--
N
L
A
Q
C
I
G
F
L
Q
----
K
--------
G
-----------
G
-----------
V
-----------
V
---------------------
P
P
S
C
C
T
G
V
K
N
I
---
L
---
N
S
S
R
T
T
A
D
R
R
A
V
C
S
C
L
K
-
A
A
-
A
G
A
V
R----
G
---------
I
--------
N
---------------
P
----------
N
N
A
E
A
L
---
P
---------
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
N
S
I
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
84.15
31%
-116
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
---------------
I
D
----
C
G
H
V
D
S
--
L
V
R
P
C
L
S
Y
V
Q
----
G
--------
G
-----------
P
-----------
G
-----------
P
---------------------
S
G
Q
C
C
D
G
V
K
N
L
---
H
---
N
Q
A
R
S
Q
S
D
R
Q
S
A
C
N
C
L
K
-
G
I
-
A
R
G
I
H----
N
---------
L
--------
N
---------------
E
----------
D
N
A
R
S
I
---
P
---------
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
D
C
S
R
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
59.64
21%
-119
- C4 -
1SM7
-
?
A:
[14-101]
-----------------------------
H
L
R
A
C
Q
Q
W
I
R
----
Q
--------
Q
LAG
S
--
P
----
F
S
E
NQWGPQQGP
S
-----------
L
---------------------
R
E
Q
C
C
N
E
L
Y
Q
E
--------------
D
Q
V
C
V
C
P
T
L
K
-
Q
A
-
A
K
S
V
RVQ--
G
---------
Q
HGPFQST
R
I
---------------
Y
----------
Q
I
A
K
N
L
---
P
---------
N
V
C
N
M
K
Q
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
57.35
28%
-99
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-------------AI
D
L
----
C
G
M
S
Q
D
--
E
L
N
E
C
K
P
A
V
S
----
K
--------
E
N-----
P
----
T
-----------
S
-----------
P
---------------------
S
Q
P
C
C
T
A
L
Q
H
A
---
D
-----------
F
A
C
L
C
G
Y
K
N
S
P
W
-
L
G
S
F
-----
G
---------
V
--------
D
---------------
P
----------
E
L
A
S
A
L
---
P
---------
K
Q
C
G
L
A
N
A
P
------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
56.85
15%
-132
- C4 -
1W2Q
-
CONG_ARAHY
A:
[23-114]
--------------------------
V
--
N
L
K
P
C
E
Q
H
I
M
----
Q
--------
R
I
MGEQE
Q
----
Y
-----------
D
-----------
S
YDIRSTR
S
S
D
Q
----------
Q
Q
R
C
C
D
E
L
N
E
M
---
E
-------
N
--
T
Q
G
C
M
C
E
A
L
Q
-
Q
I
-
M
E
N
Q
CDRLQ
D
---------
R
QMV
Q
----
Q
F
--------------
K
----------
R
E
L
M
S
L
---
P
---------
Q
Q
C
N
F
R
A
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
56.70
14%
-151
- C4 -
1BEA
-
ITRF_MAIZE
A:
[16-110]
-----------------------------
P
L
P
S
C
R
W
Y
V
T
S
R
TC
G
--------
I
------
G
----
P
R----------
L
-----------
P
W
P
E
L
-----------------
K
R
R
C
C
R
E
L
A
D
I
--------------
P
A
Y
C
R
C
T
A
L
S
-
I
L
-
M
D
G
A
I
P
P
G
-
P
---------
D
AQL
E
G
R
L
-
E
D
LPGCP
R
E
V
Q
-----
R
----------
G
F
A
A
T
L
VT-
E
---------
A
E
C
N
L
A
T
I
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
55.67
29%
-103
- C4 -
2RKN
2
DIRL1_ARATH
A:
[4-75]
----------------
L
----
C
G
M
S
Q
D
--
E
L
N
E
C
K
P
A
V
S
----
K
--------
E
------
N
----
P
T----------
S
-----------
P
---------------------
S
Q
P
C
C
T
A
L
Q
H
A
--------------
D
F
A
C
L
C
G
Y
K
N
-
S
P
W
L
G
S
F
-----
G
---------
V
--------
D
---------------
P
----------
E
L
A
S
A
L
---
P
---------
K
Q
C
G
L
A
N
A
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
52.14
14%
-94
- C4 -
2DIR
-
A:
[1-98]
-----------GSS
G
S
S
----
G
K
A
F
L
E
--
D
M
K
K
Y
A
E
T
F
L
----
E
--------
P
------
W
----
F
-----------
K
-----------
A
---------------------
P
N
K
G
T
F
Q
I
V
Y
K
S
RN
N
---
S
H
V
N
R
E
E
V
I
R
E
L
A
G
I
V
C
-
T
L
-
N
S
E
N
-----
K
---------
V
--------
D
---------------
L
----------
T
N
P
Q
-------------------
Y
T
V
V
V
E
I
I
K
A
V
C
C
L
S
V
V
K
S
G
P
S
SG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
51.69
22%
-108
- C4 -
1PSY
-
2SS_RICCO
A:
[25-116]
--------------------------
K
--
D
L
S
S
C
E
R
Y
L
R
----
Q
--------
S
S
S
R
R
--
S
T
---
G
EEVLR------
M
-----------
P
GDENQQQESQQ----------
L
Q
Q
C
C
N
Q
V
K
Q
V
------------
R
--
D
E
C
Q
C
E
A
I
K
-
Y
I
-
A
E
D
Q
I
Q
Q
--
G
QLHGEE
S
E
-
R
--------
V
---------------
A
----------
Q
R
A
G
E
I
---
V
---------
S
S
C
G
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
SP3
50.27
16%
-85
- C4 -
1B0A
-
FOLD_ECOLI
A:
[2-288]
-----------AAKI
I
D
G
K
T
I
A
Q
Q
V
R
S
--
E
V
A
Q
K
V
Q
A
R
I
----
A
--------
A
------
G
----
L
-----------
R
-----------
A
---------------------
P
-----
G
L
A
V
V
--------
L
V
G
S
N
P
A
S
Q
I
Y
V
A
S
K
R
-
K
A
-
C
E
E
V
-----
G
---------
F
--------
V
SR
S
Y
D
L
P
ETTS
E
A
E
L
L
----------
E
L
I
D
T
L
N
A
D
N
---------
T
I
D
G
I
L
V
Q
L
P
L
P
A
G
I
D
N
V
K
V
L
E
R
I
H
P
DKDVDGFH
P
Y
N
V
G
R
L
C
Q
RAPRLRP
C
T
P
R
G
I
V
T
L
L
E
R
Y
NIDTFG
L
N
A
V
V
IGASNIV
G
R
P
M
S
M
E
L
L
L
A
GCT
T
T
V
T
H
RFTKN
L
R
H
H
V
E
N
AD
L
L
I
V
A
VGKPGFIPGDWIKEG
A
I
V
I
D
V
G
I
N
R
L
ENG
K
V
V
G
DVV
F
E
D
A
A
K
R
AS
Y
I
T
P
VPGG
V
G
P
M
T
V
A
T
L
I
E
N
T
L
Q
A
C
V
EYHDPQDE
19
SP3
49.01
16%
-85
- C4 -
1B0A
-
FOLD_ECOLI
A:
[2-122]
-----------AAKI
I
D
G
K
T
I
A
Q
Q
V
R
S
--
E
V
A
Q
K
V
Q
A
R
I
----
A
--------
A
------
G
----
L
-----------
R
-----------
A
---------------------
P
-----
G
L
A
V
V
--------
L
V
G
S
N
P
A
S
Q
I
Y
V
A
S
K
R
-
K
A
-
C
E
E
V
-----
G
---------
F
--------
V
SR
S
Y
D
L
P
ETTS
E
A
E
L
L
----------
E
L
I
D
T
L
N
A
D
N
---------
T
I
D
G
I
L
V
Q
L
P
L
P
A
G
I
D
N
V
K
V
L
E
R
I
H
P
DKDVDG----------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
48.73
19%
-59
- C4 -
1PSY
-
2SS_RICCO
A:
[1-125]
A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
----
C
R
Q
E
V
Q
RK
D
L
S
S
C
E
R
Y
L
R
----
Q
--------
S
------
S
----
S
-----------
R
-----------
R
S
T
GEEVLRMPGDENQQQESQQ
L
Q
Q
C
C
N
Q
V
K
Q
V
---
R
DEC
Q
C
E
A
I
K
Y
I
A
E
D
Q
I
Q
Q
G
Q
-
L
H
-
G
E
E
S
-----
E
---------
R
--------
V
---------------
A
----------
Q
R
A
G
E
I
---
V
---------
S
S
C
G
V
R
-
C
M
R
Q
T
R
T
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
47.69
14%
-85
- C4 -
1QZM
-
LON_ECOLI
A:
[491-584]
----------------
S
----
G
Y
T
E
D
E
--
K
L
N
I
A
K
R
H
L
L
----
P
--------
K
------
Q
----
I
-----------
E
R
N
ALKKGE
L
T
V
D
---------------------
D
S
A
I
I
G
I
I
R
Y
Y
---
T
---
R
E
A
G
V
R
G
L
E
R
E
I
S
K
L
C
R
-
K
A
-
V
K
Q
L
-----
L
---------
L
--------
D
---------------
K
----------
S
L
K
H
-----------------------
I
E
I
N
G
D
-
N
L
H
D
Y
L
G
V
Q
R
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
45.81
18%
-59
- C4 -
2WNY
-
?
A:
[4-140]
--MRDMIH
N
I
S
Y
C
L
M
V
Y
----
G
T
E
D
E
E
--
K
V
I
E
A
L
R
N
V
I
----
P
G
A
T
P
E
R
E
S
A
------
E
----
G
-----------
Y
-----------
H
---------------------
G
N
P
I
T
V
L
R
G
R
L
---
D
---
R
R
R
A
L
R
E
F
M
E
K
F
T
E
V
F
R
-
G
R
-
M
D
E
L
-----
E
---------
D
--------
R
---------------
F
DENG
N
L
F
L
R
L
D
K
Q
K
A
L
---
E
G
V
W
E
P
V
RHG
D
A
I
H
L
K
I
K
V
E
A
Y
P
A
K
R
E
V
A
V
E
N
I
R
K
I
L---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
44.94
20%
-105
- C4 -
1S6D
-
2SS8_HELAN
A:
[19-97]
--------------------------
E
--
M
L
N
H
C
G
M
Y
L
M
----
K
--------
N
------
L
GERS
Q
V----------
S
PR
M
R
E
E
D
----
H
---------------------
K
Q
L
C
C
M
Q
L
K
N
L
---
D
---
E
K
--------
C
M
C
P
A
I
M
-
M
M
-
L
N
E
P
MW---
I
RMR
D
-----
Q
--------
V
---------------
M
----------
S
M
A
H
N
L
---
P
---------
I
E
C
N
L
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
44.52
11%
-113
- C4 -
1B1U
-
IAAT_ELECO
A:
[16-109]
-----------------------------
P
L
D
S
C
R
W
Y
V
S
----
T
R
T
CG----
V
------
G
----
P
R----------
L
-----------
A
T
Q
E
M
-----------------
K
A
R
C
C
R
Q
L
E
A
I
--------------
P
A
Y
C
R
C
E
A
V
R
-
I
L
-
M
D
G
V
V
T
PS-
G
Q
H
E
G
RLLQD
L
--------
P
GCP
R
Q
V
Q
R
A
------
F
----------
A
P
K
L
V
T
---
E
---------
V
E
C
N
L
A
T
I
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90.....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ISCTEAVAAMNPCLPFLIGAQASPVAPCCLAVQNVNQEASTKEIRRELCDCFKKAGPALGVKPDKAKQLPDLCHVQVPVPIDPTIDCSKVTEDIAW
43
94.86
100%
-128
- C- -
M043
-
A:
[1-98]
I
S
C
T
E
A
V
A
A
M
N
P
C
L
P
F
L
I
G
A
Q
A
S
P
V
A
P
C
C
L
A
V
Q
N
V
N
Q
E
A
S
T
K
E
I
R
R
E
L
C
D
C
F
K
K
A
G
P
A
L
G
V
K
P
D
K
A
K
Q
L
P
D
L
C
H
V
Q
V
P
V
P
I
D
P
T
I
D
C
S
K
V
T
E
D
I
A
W
42
93.64
100%
-123
- C- -
M042
-
A:
[1-98]
I
S
C
T
E
A
V
A
A
M
N
P
C
L
P
F
L
I
G
A
Q
A
S
P
V
A
P
C
C
L
A
V
Q
N
V
N
Q
E
A
S
T
K
E
I
R
R
E
L
C
D
C
F
K
K
A
G
P
A
L
G
V
K
P
D
K
A
K
Q
L
P
D
L
C
H
V
Q
V
P
V
P
I
D
P
T
I
D
C
S
K
V
T
E
D
I
A
W
45
90.69
100%
-115
- C- -
M045
-
A:
[1-142]
I
S
C
T
E
A
V
A
A
M
N
P
C
L
P
F
L
I
G
A
Q
A
S
P
V
A
P
C
C
L
A
V
Q
N
V
N
Q
E
A
S
T
K
E
I
R
R
E
L
C
D
C
F
K
K
A
G
P
A
L
G
V
K
P
D
K
A
K
Q
L
P
D
L
C
H
V
Q
V
P
V
P
I
D
P
T
I
D
C
S
K
V
T
E
D
I
A
W
44
90.22
100%
-130
- C- -
M044
-
A:
[1-142]
I
S
C
T
E
A
V
A
A
M
N
P
C
L
P
F
L
I
G
A
Q
A
S
P
V
A
P
C
C
L
A
V
Q
N
V
N
Q
E
A
S
T
K
E
I
R
R
E
L
C
D
C
F
K
K
A
G
P
A
L
G
V
K
P
D
K
A
K
Q
L
P
D
L
C
H
V
Q
V
P
V
P
I
D
P
T
I
D
C
S
K
V
T
E
D
I
A
W