@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 633_tV_THECC: (2014-05-12 )
YGPCGKHNIEKEAEKLAPCTKAAQDLKAPVSKSCCTVMEKKLKNPGCLCAIMLSHTAKNAGVKPEVAVTIPKRCNIPVRPVGHKCGAFPLV
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------....-----...-..10..---......20.-----..-..-------.-----------------.---------------.-----------------30........40.---.--------.--------.---....50-------...---.---..-------------.------.-----------60.---------.---.-.-.....-70----------.......------.-----------.80--.-----.......---90-------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------YGPC-----GKH-
N
I
E
K
E
A
---
E
K
LA
P
C
T
K
A
-----
A
Q
-
D
L
-------K-----------------A---------------P-----------------
V
S
K
S
C
C
T
V
M
E
K
KL---K--------N--------P---G
C
L
C
A
I
-------
M
L
S
---H---TA-------------K------N-----------A-G---------V---K-P-
E
V
A
V
T-I-----------PKRCNIP------V-----------RPV--G-----HKCGAFP---LV-------------------------------------------------------------------------------------------------------
37
HHSearch
80.16
23%
-128
* C2 *
1HSS
-
IAA1_WHEAT
A:
[16-106]
----------------------------------------------------------------------------------------------------
A
L
P
A
C
R
P
L
-----
L
R
-
L
Q
C
N
GS---
Q
-----------------
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-------------
A
-----------------
V
L
R
D
C
C
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Q
L
A
H
I
-------------
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--------
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---
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G
A
-------
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---
M
---
L
D
S
M
Y
----------
K
------
E
-----------
H
--GAFPRCR
R
E
V
---
V
-
K
-
L
T
A
A
S
-
I
-----------
T
A
V
C
R
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P
------
I
-----------
V
V
D
---------------------------------------------------------------------------------------------------------------------------
11
SP3
78.01
17%
-79
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------
A
I
-
S
C
G
Q
V
A
---
S
A
I
A
P
C
I
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Y
-----
A
R
-
G
Q
-------
G
-----------------
S
---------------
G
-----------------
P
S
A
G
C
C
S
G
V
R
S
L
N
N
A
A
R
--------
T
--------
T
A
D
R
R
A
A
C
N
C
-------
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K
N
---
A
---
A
A
-------------
G
------
V
-----------
S
-
G
---------
L
---
N
-
A
-
G
N
A
A
S
-
I
-----------
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S
K
C
G
V
S
--------------------
I
--
P
-----
Y
T
I
S
T
S
T
DCS
R
V
N------------------------------------------------------------------------------------------------------
22
HHSearch
73.55
26%
-60
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[2-78]
------------------------------------------------------------------------------------------
T
C
G
Q
V
Q
---
G
N
L
A
Q
C
I
G
F
-----
L
Q
-
K
G
-------------------------
G
---------------
V
-----------------
V
P
P
S
C
C
T
G
V
K
N
I
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---
N
SSRTTADR
R
--------
A
---
V
C
S
C
---------
L
K
A
-------
A
A
-------------
G
------
A
-----------
V
R
G
---------
I
---
N
-
P
-
N
N
A
E
A
-
L
-----------
P
G
K
C
G
V
N
------
I
-----------
P
-----------------------------------------------------------------------------------------------------------------------------
8
Fugue
72.42
18%
-89
- C2 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
-------------------------------------------------------------------------------
M
C
------
Y
P
-
G
Q
A
F
Q
V
---
P
A
L
P
A
C
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-----
L
R
-
L
Q
C
N
GSQVP------------------
E
---------------
A
-----------------
V
L
R
D
C
C
Q
Q
L
A
H
I
-------------
S
--------
E
---
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-------
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---
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---
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HGAFPRCR
R
------
E
-----------
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-
V
---------
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---
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-
T
-
A
A
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I
T
-
A
-------------
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------
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VDASGDG---
A
Y
V
--
C
-----
K
D
V
A
A
Y
P
---
D
A
-------------------------------------------------------------------------------------------------------
25
HHSearch
68.59
23%
-53
- C2 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
------------------------------------------------------------------------------------------
S
C
G
Q
V
A
---
S
A
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-----
A
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-------
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-----------------
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---------------
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-----------------
P
S
A
G
C
C
S
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---
N
A
-------
A
RT
T
A
D
R
R
-
A
---
A
C
N
C
---------
L
K
N
-------
A
A
-------------
A
------
G
-----------
V
S
G
---------
L
---
N
-
A
-
G
N
A
A
S
-
I
-----------
P
S
K
C
G
V
S
------
I
-----------
P
-----------------------------------------------------------------------------------------------------------------------------
1
Fugue
68.47
30%
-49
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------A
I
D
L
C
-----
G
M
------
S
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---
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A
-----
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-------
P
-----------------
T
---------------
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-----------------
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S
Q
P
C
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A
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A
-------------
D
--------
F
---
A
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-------
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---
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---
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-------------
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------
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-----------
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-
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---------
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---
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-
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-----------
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K
Q
C
G
L
A
------
N
-----------
A
P
----------
T
C
----------------------------------------------------------------------------------------------------------------
27
HHSearch
68.15
21%
-65
- C2 -
1T12
-
NLTP1_TOBAC
A:
[3-78]
------------------------------------------------------------------------------------------
T
C
G
Q
V
T
---
S
N
L
A
P
C
L
A
Y
-----
L
R
-
N
T
-------
G
---------------------------------------------------
P
L
G
R
C
C
G
G
V
K
A
L
V
---
N
--------
S
A
RT
T
E
D
R
Q
I
---
A
C
T
C
---------
L
K
S
-------
A
A
-------------
G
------
A
-----------
I
S
G
---------
I
---
N
-
L
-
G
K
A
A
G
-
L
-----------
P
S
T
C
G
V
N
------
I
-----------
P
-----------------------------------------------------------------------------------------------------------------------------
24
HHSearch
62.07
18%
-70
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[2-78]
------------------------------------------------------------------------------------------
D
C
G
H
V
D
---
S
L
V
R
P
C
L
S
Y
-----
V
Q
-
G
G
-------------------------
P
---------------
G
-----------------
P
S
G
Q
C
C
D
G
V
K
N
L
H
---
N
Q
ARS
Q
S
D
R
Q
--------
S
---
A
C
N
C
L
K
-------
G
I
A
----------------------
R
------
G
-----------
I
H
N
---------
L
---
N
-
E
-
D
N
A
R
S
-
I
-----------
P
P
K
C
G
V
N
------
L
-----------
P
-----------------------------------------------------------------------------------------------------------------------------
38
HHSearch
61.79
19%
-114
- C2 -
1SM7
-
?
A:
[14-100]
----------------------------------------------------------------------------------------------------
H
L
R
A
C
Q
Q
W
-----
I
R
-
Q
Q
-------
L
-----------------
A
G
S
P
F
S
E
NQWGPQQGP
S
-----------------
L
R
E
Q
C
C
N
E
L
Y
Q
E
-------------
D
--------
Q
---
V
C
V
C
P
T
-------
L
K
Q
---
A
---
A
K
-------------
S
V
RVQG-
Q
-----------
H
-
G
PFQST----
R
---
I
-
Y
-
Q
I
A
K
N
-
L
-----------
P
N
V
C
N
M
K
------
Q
-----------------------------------------------------------------------------------------------------------------------------------------
17
SP3
61.72
15%
-52
- C2 -
1GUY
1
MDH_CHLAA
A:
[1-306]
M
R
K
K
I
S
I
I
G
AG
F
V
G
S
T
T
A
H
W
L
A
A
K
EL
G
D
I
V
L
L
D
IVEG
V
P
Q
G
K
A
L
D
L
Y
E
A
SPIEG
F
D
V
R
V
T
G
T
NNYADTANSD
V
I
V
V
T
S
G
A
L
-----
I
K
V
-
N
A
D
I
T
R
---
A
C
I
S
Q
A
A
P
L
-----
S
P
-
N
A
-------
V
I
I
M
V-------------
N
---------------
N
-----------------
P
L
D
A
M
T
Y
L
A
A
E
V
S
---
G
--------
F
--------
P
KE-
R
V
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A
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V
L
D
A
A
R
Y
R
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---
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---
I
A
-------------
M
------
E
-----------
A
-
G
---------
V
---
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A
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-
L
M
G
G
H
GDE
M
V
P
L
P
R
F
S
T
I
S
------
G
-----------
I
P
V
--
S
-----
E
F
I
A
P
D
R
---
L
A
Q
I
V
E
R
T
R
K
G
G
G
E
I
V
N
L
L
K
TGSAY
Y
A
P
A
A
A
T
A
Q
M
V
E
A
V
L
K
DKK
R
V
M
P
V
AAYLTGQYGLNDIY
F
G
V
P
V
ILGAGGVE
K
I
L
E
L
PLN
E
E
E
M
A
L
L
N
A
S
A
K
A
V
R
A
T
L
D
T
L
5
Fugue
60.82
16%
-71
- C2 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
--------------------------------------------------------------------GPMRRERGR
Q
G
D
S
-----
S
S
C
-
E
R
Q
V
D
R
---
V
N
L
K
P
C
E
Q
H
-----
I
M
-
Q
R
-------
I
MGEQEQYDSYDIRSTR
S
S
---------------
D
-----------------
Q
Q
Q
R
C
C
D
E
L
N
E
M
E
---
N
--------
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--------
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---
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---
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---
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CDRLQDR----
Q
------
M
-----------
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---------
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---
F
-
K
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C
N
F
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APQRCD
L
-----------
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--
G
-----
G
R
C
S
---------------------------------------------------------------------------------------------------------------
21
HHSearch
60.77
27%
-45
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-75]
--------------------------------------------------------------------------------------
A
I
D
-
L
C
G
M
S
Q
---
D
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E
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A
-----
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-
K
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-------
N
P----------------
T
---------------
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-----------------
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S
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P
C
C
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A
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H
A
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-
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A
S
A
-
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A
------
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-----------
A
P
----------------------------------------------------------------------------------------------------------------------------
26
HHSearch
60.57
22%
-88
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
------------------------------------------------------------------------------------------
T
C
G
Q
V
S
---
S
S
L
A
P
C
I
P
Y
-----
V
R
-
G
G
-------------------------
G
---------------
A
-----------------
V
P
P
A
C
C
N
G
I
R
N
V
N
---
N
L
A
RT
T
P
D
R
Q
--------
A
---
A
C
N
C
---------
L
K
Q
-------
L
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-------------
A
------
S
-----------
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P
G
---------
V
---
N
-
P
-
N
N
A
A
A
-
L
-----------
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K
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G
V
S
------
I
-----------
P
-----------------------------------------------------------------------------------------------------------------------------
40
HHSearch
59.93
19%
-93
- C2 -
1BEA
-
ITRF_MAIZE
A:
[16-109]
----------------------------------------------------------------------------------------------------
P
L
P
S
C
R
W
Y
-----
V
T
-
S
R
-------
T
CGIGPR-----------
L
---------------
P
W
P
E
--------------
L
K
R
R
C
C
R
E
L
A
D
I
-------------
P
--------
A
---
Y
C
R
C
T
A
-------
L
S
I
L
M
D
G
---
A
I
-------------
P
P
G
PDAQ
L
E
G
R
--------
L
-
E
D
LPGCP
R
E
-
V
---
Q
-
R
-
G
F
A
A
T
-
L
VT---------
E
A
E
C
N
L
A
------
T
-----------
I
-----------------------------------------------------------------------------------------------------------------------------
33
HHSearch
59.59
17%
-86
- C2 -
1W2Q
-
CONG_ARAHY
A:
[16-112]
-------------------------------------------------------------------------------------------
C
E
R
Q
V
D
R
-
V
N
L
K
P
C
E
Q
H
-----
I
M
-
Q
R
-------
I
-----------------
M
---------------
G
EQEQYDSYDIRSTR
S
S
D
Q
Q
Q
R
C
C
D
E
L
N
E
M
E
---
N
--------
T
--------
Q
---
G
C
M
C
E
A
-------
L
Q
Q
---
I
---
M
E
N
Q
C----------
D
------
R
-----------
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Q
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RQ-------
M
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F
-
K
-
R
E
L
M
S
-
L
-----------
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Q
Q
C
N
F
R
------------------------------------------------------------------------------------------------------------------------------------------------
15
SP3
58.46
15%
-83
- C2 -
1HYP
-
?
?:
[6-80]
------------------------------------------------------------------------------
P
S
C
-----
P
-------------
D
L
S
I
C
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-
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-------
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-----------------
G
---------------
T
-----------------
V
-
D
D
C
C
A
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I
G
G
L
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I
-
E
--------
A
--------
I
---
V
C
L
C
---------------
I
---
Q
L
-------------
R
------
A
-----------
L
-
G
---------
I
L--
N
-
L
-
N
R
N
L
Q
L
I
-----------
L
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S
C
G
-
R
------
S
-----------
Y
P
S
--
N
-----
A
T
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P
R
T
-------------------------------------------------------------------------------------------------------------
13
SP3
57.78
19%
-65
- C2 -
1EFP
-
ETFA_PARDE
A:
[1-183]
--------------------------------------------------A
V
L
L
L
G
EVTNGALN
R
D
A
T
A
K
A
V
A
A
V
KA
L
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D
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A
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-
A
-
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A
A
A
---
E
E
A
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K
I
A
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A
K
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A
E
-
D
A
LY-----
G
-----------------
H
---------------
R
-----------------
L
A
E
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A
A
L
I
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G
L
A
---
G
--------
D
--------
Y
---
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---
H
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-------
A
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---
A
---
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-------------
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------
A
-----------
K
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---------
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---
M
-
P
-
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V
A
A
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-
L
------------
D
V
M
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------
D
VSAILDAD
T
F
E
R
P
I
YA
G
N
A
I
Q
V
V
K
S
K
D
A
K
---
K
V
F
T
I
RTASFDAAGEGGTA
P
V
T
E
T
A
A
A
A
D
PGL
S
S
W
V
A
D
E
V
A
E---------------------------------------------------------------
36
HHSearch
55.01
17%
-102
- C2 -
1B1U
-
IAAT_ELECO
A:
[16-110]
----------------------------------------------------------------------------------------------------
P
L
D
S
C
R
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Y
-----
V
S
-
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T
CGVGP-
R
-----------------
L
---------------
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--------------
M
K
A
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-------------
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--------
A
---
Y
C
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A
-------
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---
L
M
D
G
V
V
-------------
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------
P
SG
Q
H
E
G
RLLQD
L
P
G
CP
R
Q
-----
V
Q
--
R
A
F
-
A
P
K
L
V
-
T
-----------
E
V
E
C
N
L
A
------
T
-----------
I
H
G
---------------------------------------------------------------------------------------------------------------------------
29
HHSearch
54.73
25%
-75
- C2 -
1N89
1
NLT2G_WHEAT
A:
[5-65]
---------------------------------------------------------------------------------------------------
S
Q
L
A
V
C
A
S
A
-----
I
L
-
S
G
-------------------------
A
---------------
K
-----------------
P
S
G
E
C
C
G
N
L
R
A
Q
-------------
Q
------------
G
C
F
C
Q
Y
-------
A
K
D
---
P
---
T
Y
-------------
G
------
Q
-------------
Y
---------
I
---
R
-
S
-
P
H
A
R
D
-
T
-----------
L
T
S
C
G
L
A
------
V
-----------
P
-----------------------------------------------------------------------------------------------------------------------------
30
HHSearch
54.21
17%
-53
- C2 -
1S6D
-
2SS8_HELAN
A:
[2-97]
-----------------------------------------------------------------------------
Y
G
R
G
-----
R
T
E
S
G
C
Y
Q
Q
M
E
E
A
E
M
L
N
H
C
G
M
Y
-----
L
M
-
K
N
-------
L
-----------------
G
ERSQVSPR
M
R
E
E
---
D
-----------------
H
K
Q
L
C
C
M
Q
L
K
N
L
-------------
D
--------
E
---
K
C
M
C
P
A
-------
I
M
M
---
M
---
L
N
-------------
E
------
P
-----------
M
W
I
RMR
D
-----
Q
---
V
-
M
-
S
M
A
H
N
-
L
-----------
P
I
E
C
N
L
M
------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(1 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
YGPCGKH
N
I
E
K
E
A
E
K
LA
P
C
T
K
A
A
Q
D
L
KAP
V
S
K
S
C
C
T
V
M
E
K
KLKNPG
C
L
C
A
I
M
L
S
HTAKNAGVKP
E
V
A
V
TIPKRCNIPVRPVGHKCGAFPLV
41
82.35
100%
-70
- C- -
M041
-
A:
[1-129]
Y
G
P
C
G
K
H
N
I
E
K
E
A
E
K
L
A
P
C
T
K
A
A
Q
D
L
K
A
P
V
S
K
S
C
C
T
V
M
E
K
K
L
K
N
P
G
C
L
C
A
I
M
L
S
H
T
A
K
N
A
G
V
K
P
E
V
A
V
T
I
P
K
R
C
N
I
P
V
R
P
V
G
H
K
C
G
A
F
P
L
V