@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 732_tV_SELMO: (2014-05-14 )
ACDATNNMGKLLPCRQAAVKNGKDPKQLAGCCDAVKPFSGSKDAADCLCQSLLAAQKVDKTVDLHSAIAIPAKCGIPVQANLNCNGMAVPQH
Atome Classification :
(20 SA)
----------------........-.10-..--------......-----.20----..-.---------------.----------.-------------------....30.......---------.-------40--.-.--.----.----.---....50....-----..-------------.----------.60..----------.....----.-----70.....----.---------.------.----80-----------------........-.-90.---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------ACDATNNM-GK--L
L
--------
P
C
R
Q
A
A
-----VK-----NG-K---------------
D
----------
P
-------------------
K
Q
L
A
G
C
C
D
AVKPF---------S-------G---S-
K
--
D
----
A
----
A
---
D
C
L
C
Q
S
L
L
A
A
-----
Q
K
-------------
V
----------
D
K
T
VD----------LHSAI----A-----IPAKCGI----
P
---------
V
------
Q
----
A
------------------NLNCNGMA-V-PQH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
79.88
31%
-97
- C4 -
1AFH
-
NLTP_MAIZE
A:
[8-91]
-----------------------
A
-
S
A
--
I
A
--------
P
C
I
S
Y
A
-----
R
G
-----
Q
G
-
S
---------------
G
----------
P
---------------------
S
A
G
C
C
S
G
V
R
S
L
---------
N
-------
N
A
--
A
-
R
--
T
T
A
D
R
R
----
A
---
A
C
N
C
-
L
K
N
A
A
-----
A
G
-------------
V
-----------
S
G
L
N
----------
A
G
N
A
A
----
S
-----
I
P
S
K
C
G
V
----
S
---------
I
------
P
Y
T
I
S
T
------------------
S
T
D
C
S
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
75.81
20%
-144
- C4 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
----------------
M
C
Y
P
G
Q
A
F
-
Q
V
PA
L
P
--------
A
C
R
P
L
L
-----
R
L
Q
C
N
GS
Q
V
-
P
--------------------------
E
-------------------
A
V
L
R
D
C
C
Q
Q
L
A
H
I
---------
S
--------------------------
E
---
W
C
R
C
G
A
L
Y
S
M
-----
L
D
S
M
Y
K
E
HGAFPRCR
R
----------
E
V
V
K
L
----------
T
A
A
S
I
----
T
-----
A
--
V
C
R
L
----
P
---------
I
V
VDASG
D
----
G
------------------
A
Y
V
C
K
D
V
A
A
Y
-
P
D
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
SP3
75.03
22%
-68
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
----------------
A
I
S
C
G
Q
V
A
-
S
A
--
I
A
--------
P
C
I
S
Y
A
-----
R
G
-----
Q
G
-
S
---------------
G
----------
P
---------------------
S
A
G
C
C
S
G
V
R
S
L
---------
N
-------
N
A
AR
T
-
T
--
A
----
D
----
R
---
R
A
A
C
N
C
L
K
N
A
-----
A
A
-------------
G
----------
V
S
G
L
N
----------
A
G
N
A
A
----
S
-----
I
P
S
K
C
G
V
SIPY
T
---------
I
------
S
----
T
------------------
S
T
D
C
S
R
V
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
72.75
29%
-94
- C4 -
1T12
-
NLTP1_TOBAC
A:
[8-89]
-----------------------
T
-
S
N
--
L
A
--------
P
C
L
A
Y
L
-----
R
N
-----
T
G
----------------------------
P
---------------------
L
G
R
C
C
G
G
V
K
A
L
---------
V
-------
N
---
S
A
R
--
T
----
T
E
D
R
Q
I
---
A
C
T
C
-
L
K
S
A
A
-----
G
A
-------------
I
-----------
S
G
I
N
----------
L
G
K
A
A
----
G
-----
L
P
S
T
C
G
V
----
N
---------
I
------
P
YKIS
P
------------------
S
T
D
C
S
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
70.37
28%
-74
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[8-90]
-----------------------
S
-
S
S
--
L
A
--------
P
C
I
P
Y
V
-----
R
G
------
G
-
G
---------------
A
----------
V
-------------------
P
--
P
A
C
C
N
G
I
R
N
V
---------
N
-------
N
L
A
R
T
-
T
P
D
R
----
Q
----
A
---
A
C
N
C
L
K
Q
L
-
S
-----
A
S
-------------
V
-----------
P
G
V
N
----------
P
N
N
A
A
----
A
-----
L
P
G
K
C
G
V
----
S
---------
I
------
P
YKIS
A
------------------
S
T
N
C
A
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
69.75
27%
-79
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[7-88]
-----------------------
D
-
S
L
--
V
R
--------
P
C
L
S
Y
V
-----
Q
G
------
G
-
P
---------------
G
----------
P
---------------------
S
G
Q
C
C
D
G
V
K
N
L
---------
H
-------
N
Q
--
A
-
R
--
S
Q
S
D
R
Q
----
S
---
A
C
N
C
L
K
G
I
A
R
------
G
-------------
I
-----------
H
N
L
N
----------
E
D
N
A
R
----
S
-----
I
P
P
K
C
G
V
----
N
---------
L
------
P
Y
T
I
S
L
------------------
N
I
D
C
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
68.94
32%
-73
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[6-89]
----------------------
V
Q
-
G
N
--
L
A
--------
Q
C
I
G
F
L
-----
Q
K
------
G
-
G
---------------
V
----------
V
---------------------
P
P
S
C
C
T
G
V
K
N
I
---------
L
-------
N
---
S
S
R
--
T
TADR
R
----
A
---
V
C
S
C
L
K
A
A
A
G
------
A
-------------
V
-----------
R
G
I
N
----------
P
N
N
A
E
----
A
-----
L
P
G
K
C
G
V
----
N
---------
I
------
P
YKIS
T
------------------
S
T
N
C
N
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
SP3
66.21
17%
-94
- C4 -
1HYP
-
?
?:
[6-80]
---------------------
P
S
C
-
P
D
--
L
S
--------
I
C
L
N
-------
I
L
-----
G
G
-
S
---------------
L
----------
G
--------------------
T
V
D
D
C
C
A
L
I
G
G
L
---------
G
-------
D
---
I
----
E
----
A
----
I
---
V
C
L
C
I
Q
L
R
A
L
-----
G
I
-------------
L
----------
N
L
N
R
N
----------
L
Q
L
I
L
------------
N
S
C
G
R
----
S
---------
Y
------
P
----
S
------------------
N
A
T
C
P
R
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
63.26
26%
-157
- C4 -
1HYP
-
HPSE_SOYBN
A:
[25-79]
-------------------------------------------------------------------------------------------------------------
V
D
D
C
C
A
L
I
G
G
L
---------
G
-------
D
-----
I
--
E
----
A
----
I
---
V
C
L
C
I
Q
L
R
A
---------------------
L
----------
G
I
-
L
N
----------
L
N
R
N
L
----
Q
L
----
I
L
N
S
C
G
R
----
S
---------
Y
------
P
----
S
------------------
N
A
T
C
P
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
62.30
29%
-77
- C4 -
2RKN
2
DIRL1_ARATH
A:
[8-74]
----------------------
S
Q
-
D
E
--
L
N
--------
E
C
K
P
A
V
-----
S
K
-----
E
N
P
T
---------------
S
----------
P
---------------------
S
Q
P
C
C
T
A
L
Q
H
A
--------------------------
D
---------
F
---
A
C
L
C
G
Y
K
N
S
P
-----
W
L
-------------
G
----------
S
F
G
V
D
----------
P
E
L
A
S
----
A
-----
L
P
K
Q
C
G
L
----
A
---------
N
------
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
60.43
18%
-36
* C5 *
1QUS
2
MLTB_ECOLI
A:
[1-322]
-----MVEPQHNVM
Q
M
G
G
D
F
A
N
N
P
-
N
A
--
Q
Q
--------
F
I
D
K
M
V
-----
N
K
-----
H
G
-
F
---------------
D
----------
R
-------------------
Q
Q
L
Q
E
I
L
S
Q
A
K
R
L
D
S
V
L
R
L
M
D
N
Q
-------
G
---
P
-
N
--
G
----
A
----
W
---
L
R
Y
R
K
K
F
I
T
P
-----
D
N
-------------
V
----------
Q
N
G
V
V
----------
F
W
N
Q
Y
----
E
D
A
L
N
R
A
W
Q
V
Y
G
V
----
P
P
E
I
I
V
G
I
I
G
V
------
E
----
T
------------------
R
W
---
G
R
V
-
M
-
G
K
T
R
I
L
D
A
L
A
T
L
S
F
NYPRR
A
E
Y
F
S
G
E
L
E
T
F
L
L
M
A
R
D
E
QDDPLN
L
K
G
S
FAGAMGYGQFM
P
S
S
Y
K
Q
YAVDFSGDGHINLWD
P
V
D
A
I
G
S
V
A
N
Y
F
K
A
H
G
W
V
K
GDQV
A
V
M
A
N
G
QAPG
L
P
N
G
FK
T
K
Y
S
I
S
Q
L
A
A
A
G
L
T
P
QQPLGNHQ
Q
A
S
L
L
R
L
D
VGT
G
Y
Q
Y
W
YGL
P
N
F
Y
T
I
T
R
Y
NHS
T
H
Y
A
M
A
V
W
Q
L
G
Q
A
V
A
L
A
R
V
Q
15
Fugue
59.17
20%
-46
- C4 -
1PSY
-
2SS_RICCO
A:
[1-125]
A
E
F
M
E
S
K
G
E
R
E
G
S
S
SQ
Q
C
R
Q
E
V
Q
R
-
K
D
--
L
S
--------
S
C
E
R
Y
L
-----
R
Q
-----
S
S
-
S
---------------
R
----------
R
S
T
GEEVLRMPGDENQQQES
Q
Q
L
Q
Q
C
C
N
Q
V
K
Q
V
---------
R
-------
D
---
E
-------------------
C
Q
C
E
A
I
K
Y
I
-----
A
E
-------------
D
----------
Q
I
Q
Q
G
QLHGEE
S
E
R
V
A
Q
R
A
G
----
E
-----
I
V
S
S
C
G
V
----
R
---------
C
------
M
----
R
------------------
Q
T
R
T
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
58.69
17%
-95
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
-
A
E
--
M
L
N
-------
H
C
G
M
Y
L
-----
M
K
-----
N
L
-
G
---------------
E
RSQVSPR
M
R
E
E
-------------------
D
H
K
Q
L
C
C
M
Q
L
K
N
L
---------
D
--------------------------
E
---
K
C
M
C
P
A
I
M
M
M
L
N
EPM
W
I
-------------
R
----------
M
R
D
Q
V
----------
M
S
M
A
H
----
N
-----
L
P
I
E
C
N
L
--------------------------
M
------------------
S
Q
P
C
Q
M
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
58.50
17%
-65
- C4 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
--GPMRRERGRQGDSS
S
C
E
R
Q
V
D
R
-
V
N
--
L
K
--------
P
C
E
Q
H
I
-----
M
Q
-----
R
I
-
M
GEQEQYDSYDIRSTR
S
----------
S
-------------------
D
Q
Q
Q
R
C
C
D
E
L
N
E
M
---------
E
-------
N
---
T
--------------
Q
---
G
C
M
C
E
A
L
Q
Q
I
-----
M
E
N
Q
CDRLQDR----
Q
----------
M
V
Q
Q
F
----------
K
R
E
L
M
----
S
-----
L
P
Q
Q
C
N
F
----
R
---------
A
------
P
----
Q
------------------
R
--
C
D
L
D
V
-
S
-
G
G
R
CS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
58.05
23%
-43
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
---------------A
I
D
L
C
G
M
S
Q
-
D
E
--
L
N
--------
E
C
K
P
A
V
-----
S
K
-----
E
N
-
P
---------------
T
----------
S
-------------------
P
S
-
Q
P
C
C
T
A
L
Q
H
A
---------
D
--------------------------
F
---
A
C
L
C
G
Y
K
N
S
P
-----
W
L
-------------
G
----------
S
F
G
V
D
----------
P
E
L
A
S
----
A
-----
L
P
K
Q
C
G
L
----
A
---------
N
------
A
----
P
------------------
T
--
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
55.08
26%
-53
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------
A
G
C
N
A
-
G
Q
--
L
T
--------
V
C
T
G
A
I
-----
A
G
-----
G
A
-
R
---------------
P
----------
T
----------------------
A
A
C
C
S
S
L
R
----------------------------
A
----
Q
----
Q
---
G
C
F
C
Q
-
F
A
K
D
-----
P
R
-------------
Y
----------
G
R
Y
V
N
----------
S
P
N
A
R
----
K
-----
A
V
S
S
C
G
I
----
A
----------------------------------------
L
P
T
C
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
54.53
27%
-134
- C4 -
2DS2
-
?
B:
[5-64]
-----------------------------------------------------------------------------------------------------------
P
A
L
R
Q
C
C
N
Q
L
R
Q
V
---------
D
-------
R
---
P
-------------------
C
V
C
P
V
L
R
Q
A
-----
A
Q
Q
------------
V
L
Q
R
Q
IIQG
P
Q
Q
L
R
R
L
----------
F
D
A
A
R
----
N
-----
L
P
N
I
C
N
I
----
P
---------
N
------
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
54.50
18%
-103
- C7 -
1NXJ
2
RRAAH_MYCTU
A:
[28-183]
-------A
I
S
F
R
P
T
A
D
L
V
D
D
I
G
P
D
-
V
R
--
S
C
D
L
Q
F
R
Q
F
G
G
R
S
Q
F
A
G
P
I
S
T
V
R
-----
C
F
-
Q
---------------
D
----------
N
-------------------
A
L
L
K
S
V
L
S
Q
P
S
A
G
---------
G
V
L
V
I
D
GA
G
---
S
-
L
--
H
----
T
----
A
LVG
D
V
I
A
E
L
A
R
S
T
------
G
-------------
W
----------
T
G
L
I
-----------
V
H
G
A
V
R
D
A
A
A
-----
L
-
R
G
I
D
I
----
G
---------
I
------
K
----
A
LGTNP
R
K
S
T
K
TG
A
G
E
R
D
V
E
I
T
L
G
G
V
T
-
F
V
P
G
D
I
A
Y
S
D
DD
G
I
I
V
V---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
50.40
19%
-53
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------
A
G
C
N
A
-
G
Q
--
L
T
--------
V
C
T
G
A
I
-----
A
G
-----
G
A
-
R
---------------
P
----------
T
----------------------
A
A
C
C
S
S
L
--------------------------
R
--
A
----
Q
----
Q
---
G
C
F
C
Q
-
F
A
K
D
-----
P
R
-------------
Y
----------
G
R
Y
V
N
----------
S
P
N
A
R
----
K
-----
A
V
S
S
C
G
I
----
A
----------------------------------------
L
P
T
C
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
49.10
16%
-44
- C6 -
1HE1
2
?
A:
[1-135]
-------------A
S
S
A
V
V
F
K
Q
M
V
L
Q
Q
--
A
L
--------
P
M
T
L
K
G
-----
L
D
K
A
SEL
A
T
-
L
---------------
T
----------
P
-------------------
E
G
L
A
R
E
H
S
R
L
A
S
G
---------
D
-------
G
---
A
-
L
--
R
----
S
----
L
---
S
T
A
L
A
G
I
R
A
G
-----
S
Q
-------------
V
----------
E
E
S
R
I
----------
Q
A
G
R
L
----
L
-----
E
R
S
I
G
G
I
----
A
---------
L
------
Q
----
Q
------------------
W
G
T
T
G
G
-
A
-
A
-
S
Q
L
V
L
D
AS
P
E
L
R
R
E
I
T
D
Q
L
H
Q
V
M
S
E
V
A
L
L
R
Q
A
V
E
S
E
V
S----------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ACDATNNMGKL
L
P
C
R
Q
A
A
VKNGK
D
P
K
Q
L
A
G
C
C
D
AVKPFSGS
K
D
A
A
D
C
L
C
Q
S
L
L
A
A
Q
K
V
D
K
T
VDLHSAIAIPAKCGI
P
V
Q
A
NLNCNGMAVPQH
37
85.93
100%
-104
- C- -
M037
-
A:
[1-162]
A
C
D
A
T
N
N
M
G
K
L
L
P
C
R
Q
A
A
V
K
N
G
K
D
P
K
Q
L
A
G
C
C
D
A
V
K
P
F
S
G
S
K
D
A
A
D
C
L
C
Q
S
L
L
A
A
Q
K
V
D
K
T
V
D
L
H
S
A
I
A
I
P
A
K
C
G
I
P
V
Q
A
N
L
N
C
N
G
M
A
V
P
Q
H
33
32.12
100%
19
- C- -
M033
-
A:
[2-114]
A
C
D
A
T
N
N
M
G
K
L
L
P
C
R
Q
A
A
V
K
N
G
K
D
P
K
Q
L
A
G
C
C
D
A
V
K
P
F
S
G
S
K
D
A
A
D
C
L
C
Q
S
L
L
A
A
Q
K
V
D
K
T
V
D
L
H
S
A
I
A
I
P
A
K
C
G
I
P
V
Q
A
N
L
N
C
N
G
M
A
V
P
Q
H