@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0401: (2015-12-01 )
MAEIDYHKITIVMTNGQEFETRSTYGKEGDKIKLDRDPLTHPAWTGSLTSGSTNKTSKIAKFNDKYGNIF
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10...-.....------20........30---.........-40........50.-.......---60..-......70-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAE
I
D
Y
H
K
I
T
I
V
M
T-NGQEF------ETRSTYGKEG
D
----
K
I
K
LDRDPL-THPAWTGSLTSGS-TNKTS
K
I
---AKFN-DKYGNIF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
73.03
18%
-39
* C6 *
4UMW
2
?
A:
[124-730]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RLKEN
L
P
L
I
T
L
I
V
M
M
A
I
S
W
G
L
E
Q
FN
H
P
F
G
Q
L
A
F
I
A
T
T
L
V
G
L
Y
P
I
A
R
Q
A
L
R
L
I
K
S
GSYFA
I
E
T
L
M
S
V
A
A
I
G
A
L
F
I
GA
T
A
E
A
A
M
V
L
L
L
F
L
I
G
E
R
L
E
G
W
A
ASRV
S
A
L
M
A
L
K
-
P
E
T
A
T
R
L
R
-
N
G
E
R
E
------
E
V
A
I
N
S
L
R
P
G
D
----
V
I
E
V
A
A
G
G
R
-
L
P
A
--
D
G
K
L
L
S
--------
P
F
---
A
S
F
D
-
E
S
A
L
T
G
E
SI
P
V
E
R
A
TG
D
K
V
P
A
GATSVD
R
L
V
T
L
E
VLSEPGAS
A
I
D
R
I
L
K
L
I
E
E
A
E
E
R
R
A
P
I
E
R
F
I
D
R
F
S
R
I
Y
T
P
A
I
M
A
V
A
L
L
V
T
L
VPPLLFAAS
W
Q
E
W
I
Y
K
G
L
T
L
L
L
I
G
CPCALVI
S
T
P
A
A
I
T
S
G
L
A
A
A
A
R
R
G
A
L
I
K
G
G
A
A
L
E
Q
L
G
R
VT
Q
V
A
F
D
K
TGTLTVG
K
P
R
V
T
A
I
H
P
A
TGIS
E
S
E
L
L
T
L
A
A
A
V
E
QGATH
P
L
A
Q
A
I
V
R
E
A
Q
V
A
ELAIPTAESQRALVG
S
G
I
E
A
Q
V
NG
E
R
V
L
I
C
A
AGKHPADAF
A
G
L
I
N
E
L
E
S
A
G
Q
T
V
V
L
V
V
R
NDDVL
G
I
I
A
L
Q
DTLRAD
A
A
T
A
I
S
E
L
N
A
L
G
V
K
G
V
I
L
T
GDN
P
R
A
A
A
A
I
A
G
E
L
G
L
E
F
K
A
GLL
P
E
D
K
V
K
A
V
T
K
L
N
Q
H
A
P
L
A
M
V
G
DGIND
A
P
A
M
K
A
AA
I
G
I
A
M
GSGT
D
V
A
L
E
T
ADAALTHNH
L
R
G
L
V
Q
M
I
E
L
A
R
A
T
H
A
N
I
R
Q
N
I
T
I
A
L
G
L
K
G
I
F
L
V
T
T
L
L
GMTG
L
W
L
A
V
L
A
D
T
G
A
T
V
L
V
T
A
N
A
L
RLLR
2
PsiBlast_PDB
65.08
27%
-5
- C8 -
4C7O
4
SRP54_ECOLI
A:
[62-123]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
E
V
N
K
S
L
T
-
P
G
Q
E
F
V
K
I
V
R
N
E
L
V
A
A
M
G
E
E
N
Q
----
T
L
N
L
A
A
Q
P
P
-
A
V
V
L
M
A
G
L
Q
G
A
G
K
-
T
T
S
V
G
K
L
---
G
K
F
L
-
R
E
K
H
K
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
60.71
11%
-12
- C7 -
4IMP
1
?
A:
[31-550]
SD
P
A
A
G
W
F
W
Q
A
V
A
R
QD
L
K
S
V
S
D
A
L
DLDADAP
L
S
A
T
L
P
A
L
S
V
W
H
R
Q
E
R
E
R
V
L
A
D
G
W
R
Y
R
V
D
W
V
R
V
A
P
Q
P
VRR
T
R
E
T
W
L
L
V
V
P
PGGIE
E
A
L
V
E
R
L
T
D
A
L
N
T
R
G
I
S
T
L
R
L
D
V
P
P
AAT
S
G
E
L
A
T
E
L
R
A
A
A
D
G
DPVK
A
I
L
S
LTALDERPHPECKDVP
S
G
I
A
L
L
L
N
L
V
K
A
L
G
E
A
DLR
I
P
L
W
T
I
T
R
GAVKAGPADRLLR
P
M
Q
A
Q
A
W
G
L
G
R
V
A
A
L
E
HPERWG
G
L
I
D
L
P
DSLDGD
V
L
T
R
L
G
E
A
L
T
NGLAED
Q
L
A
I
R
QS
G
V
L
A
R
R
L
V
P
A
P
ANQPAGRK
W
R
P
R
G
S
A
L
I
T
GGLG
A
V
G
A
Q
V
A
R
W
L
A
E
I
G
A
E
R
I
V
L
T
S
R
-
R
G
N
Q
A
------
A
G
A
A
E
L
E
A
E
L
R
----
A
L
G
A
-----------
Q
V
S
I
V
A
C
D
-
V
T
D
R
A
E
M
---
S
A
L
L
-
A
E
F
D
-
V
T
A
V
F
H
A
A
G
V
G
R
L
L
P
LAETD
Q
N
G
L
A
E
I
C
A
A
K
V
R
G
A
Q
V
L
D
E
L
C
DSTDLDAF
V
L
F
S
S
GAGVWGGGGQ
G
A
Y
G
A
A
N
A
F
L
D
T
L
A
E
Q
R
R
A
R
G
L
P
A
T
S
I
S
W
G
S
WAGGGMADG
A
A
G
E
H
L
R
R
R
G
I
R
P
M
P
A
A
S
A
I
L
A
L
Q
E
V
L
D
Q
DET
C
V
S
I
A
DVD
W
D
R
F
V
P
T
F
A
A
TRATRLFDEV
P
A
A
R
K
AM------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
58.86
37%
10
- C12 -
2YFO
9
?
A:
[189-224]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
F
------
D
V
L
R
F
Y
G
K
H
A
M
----
E
R
N
L
E
R
T
P
L
-
G
H
----
G
T
I
A
F
G
S
-
R
R
G
T
S
S
H
---
Q
Y
N
P
-
A
V
I
L
A
E
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
58.24
37%
11
- C12 -
2YFN
2
?
A:
[189-224]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
F
------
D
V
L
R
F
Y
G
K
H
A
M
----
E
R
N
L
E
R
T
P
L
-
G
H
----
G
T
I
A
F
G
S
-
R
R
G
T
S
S
H
---
Q
Y
N
P
-
A
V
I
L
A
E
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
57.75
27%
17
- C8 -
2XXA
3
SRP54_ECOLI
A:
[62-123]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
E
V
N
K
S
L
T
-
P
G
Q
E
F
V
K
I
V
R
N
E
L
V
A
A
M
G
E
E
N
Q
----
T
L
N
L
A
A
Q
P
P
-
A
V
V
L
M
A
G
L
Q
G
A
G
K
-
T
T
S
V
G
K
L
---
G
K
F
L
-
R
E
K
H
K
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
56.64
36%
-22
- C8 -
3COX
1
CHOD_BREST
A:
[219-254]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
N
N
A
G
----
K
K
S
L
D
K
T
Y
L
-
A
Q
A
A
A
T
G
K
L
T
I
T
T
-
L
H
R
V
T
K
V
---
A
P
A
T
-
G
S
G
Y
S
V
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
55.62
35%
-16
* C12 *
3SE7
2
?
A:
[158-194]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
P
T
D
Q
L
-
T
Y
P
V
F
V
K
P
A
R
S
G
S
-
S
F
G
V
S
K
V
---
A
R
E
E
-
D
L
Q
G
A
V
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
55.33
36%
-19
- C8 -
1COY
1
CHOD_BREST
A:
[219-254]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
N
N
A
G
----
K
K
S
L
D
K
T
Y
L
-
A
Q
A
A
A
T
G
K
L
T
I
T
T
-
L
H
R
V
T
K
V
---
A
P
A
T
-
G
S
G
Y
S
V
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
54.25
45%
-30
- C11 -
2E75
-
CYF_MASLA
C:
[172-193]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
A
S
A
-
T
G
T
I
T
K
I
---
A
K
E
E
-
D
E
Y
G
N
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
53.35
45%
-30
- C11 -
4H13
-
CYF_MASLA
C:
[172-193]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
A
S
A
-
T
G
T
I
T
K
I
---
A
K
E
E
-
D
E
Y
G
N
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
52.17
45%
-17
- C11 -
2E76
-
CYF_MASLA
C:
[172-193]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
A
S
A
-
T
G
T
I
T
K
I
---
A
K
E
E
-
D
E
Y
G
N
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
51.66
18%
10
- C5 -
3U6G
-
?
A:
[30-154]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AS
D
F
Q
T
G
I
H
K
I
V
I
Q
Q
S
G
D
T
D
S
F
------
E
V
S
V
S
I
G
G
A
D
K
GGP
A
K
L
Y
N
D
K
G
E
Y
-
I
G
D
S
Y
S
A
Q
I
R
T
A
T
M
S
C
C
T
N
G
N
---
A
-
F
F
M
T
C
A
G
S
V
S
S
ISEAG
K
R
L
H
I
T
V
I
G
Y
I
DDKEV
N
R
L
E
K
E
Y
I
T
DG
N
T
L
I
E
T
F
S
V
S
TKEI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
50.21
45%
-36
- C10 -
2D2C
-
CYF_MASLA
C:
[172-193]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
A
S
A
-
T
G
T
I
T
K
I
---
A
K
E
E
-
D
E
Y
G
N
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
49.98
45%
-5
- C11 -
4H0L
-
CYF_MASLA
C:
[172-193]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
A
S
A
-
T
G
T
I
T
K
I
---
A
K
E
E
-
D
E
Y
G
N
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
49.17
15%
9
- C7 -
3F2E
1
?
A:
[8-90]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
A
V
A
E
Q
V
S
A
V
L
S
Q
-
Y
G
I
T
G
------
P
N
R
A
I
Y
Q
G
F
G
L
----
K
V
A
R
A
L
N
R
L
G
G
G
P
A
L
V
N
M
I
N
G
L
K
-
A
Y
Y
I
S
A
F
NAN
P
T
V
L
-
D
A
V
T
D
I
I
TGSPTGYVS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
49.13
45%
-10
* C11 *
4I7Z
-
CYF_MASLA
C:
[172-193]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
A
S
A
-
T
G
T
I
T
K
I
---
A
K
E
E
-
D
E
Y
G
N
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
48.95
45%
-11
- C11 -
2E74
-
CYF_MASLA
C:
[172-193]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
A
S
A
-
T
G
T
I
T
K
I
---
A
K
E
E
-
D
E
Y
G
N
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
48.03
45%
-6
* C10 *
1VF5
-
CYF_MASLA
C:
[172-193]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
T
A
S
A
-
T
G
T
I
T
K
I
---
A
K
E
E
-
D
E
Y
G
N
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
47.35
25%
128
- C- -
1NKW
-
RL31_DEIRA
Y:
[4-66]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
H
P
K
A
V
P
C
K
I
I
Y
Q
-
G
Q
V
V
M
------
E
T
M
S
T
R
----
P
----
E
I
H
V
D
V
W
S
G
-
V
H
P
F
W
T
G
E
--
E
R
F
-
L
D
T
E
G
R
V
---
D
K
F
N
-
K
R
F
G
D
S
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------