@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0103: (2016-03-12 )
MNKLRDTTFLSYLFTIILWGSAFPMIKIALNDFSAESLSAFRLILATIILLPFVIIKKLPTPELRDIPVIFILGFCGFVIYHTALNFGETLISAGISGILVSTTPIFSSALAYIFLKEHFSKWNWLSSLVAFIGISIISISKDDYTTINVLGVFIILLASFSESLYFTFQKKYIEKYGFIAFTLYTIMASSPFMLIFIPEIINDIHGATFTSIVSVLYLAIFPTIIPYVLLAYIVKSVGVSDATMSLYLTPIVSLLLSYLLLDELPTTLAIIGGIITLLGVSLSNFFQNT
Atome Classification :
(16 SA)
---------------------------------------.........----------10-........20--........30......-..40.---------...------.------...50..--------------..--------------....60.-------------.....------..70-----.------------.......-------80--..---.......90......-----..-100...-------.-----....110..-.....120------------------------..----.....130.-------------------------.---------..---------.--..140.-----...----...150-----.......160-----........170.....--------...180..------------.....--190--...--....------..200...------...-.210--....----.....220.-...------------...230--.......--.--.240...-...-----.250--.----......------.260..-....------.270---.-.-----------......280.......290-----------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------MNKL
R
D
T
T
F
----------
L
S
-
Y
L
F
T
I
I
LWGS--AF
P
M
I
K
I
A
LNDFS
A
E
S
-
L
S
A
F
R
---------
L
I
L
------
A
------
T
I
I
L
L
P
F
--------------
V
I
--------------
I
KKLPTP-------------ELRDI------
P
V
I
F
-----
I
------------
L
G
F
C
G
F
V
-------
I
---
Y
H
---
T
A
L
N
F
G
E
T
L
I
S
AGIS-----
G
I
-
L
-
V
ST
T
-------
P
-----
I
F
S
S
A
L
A
Y
I
-
F
L
K
E
H
F
S
K
------------------------
W
N
----
W
L
S
S
L
V
A
F
I-------------------------
G
---------
I
S
---------
I
--
I
S
ISKD-----DYT----
T
I
N
V
L
G
-----
V
F
I
I
L
L
A
S
F
------
S
E
S
L
Y
F
T
F
Q
-
K
K
Y
I
E
K
--------Y
G
F
I
A
F
T
L
------------
Y
T
I
MA--S----S
P
F
--
M
L
I
F------
I
P
E
I
I
N
D
I------HG
A
-
T
F
----
T
S
I
V
----
S
V
L
Y
L
A
I
F
P
-
T
I
I
------------
P
Y
V
L
----
L
A
Y
I
V
K
S--V--GVSD
A
T
M
-
S
L
Y
-----
L
T
P
---
I
----
V
S
L
L
L
S
------
Y
L
L
L
D
E-L
P
T
T
------
L
A
I
----
I
-
G
-----------
G
I
I
T
L
L
G
V
S
L
S
N
F
FQNT-------------------------------
15
Fugue
85.07
16%
-148
* C5 *
4MFL
7
?
A:
[23-345]
--------------------------------MD
P
E
T
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I
A
L
G
L
E
E
R
T
----------
A
A
-
W
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E
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G
P
--
P
A
E
P
V
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R
G
E
E
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-
L
R
R
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E
---------
V
P
----------------
E
L
D
A
E
--------------
E
I
--------------
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A
A
A
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-------------
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-
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D
P
------
A
L
W
W
-----
L
------------
L
E
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T
H
H
A
-------
I
---
V
R
------
H
M
G
D
H
R
A
K
P
R
G
G
-----
P
P
-
L
-
P
Y
E
G
---------------
G
A
A
A
R
Y
F
-
H
V
Y
V
F
L
A
T
------------------------
V
P
----
A
V
R
R
F
H
A
E
R
-------------------------
G
---------
I
P
---------------
D
E
V
-----
G
W
E
----
T
L
T
Q
L
G
-----
E
L
V
A
I
H
R
R
K
YG
Q
G
G
M
N
M
Q
W
W
T
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Y
H
L
R
G
I
L
Y
R
--------
L
G
R
L
Q
F
S
L
------------
A
T
G
K
D
--
G
----
T
P
H
--
L
G
L
A
------
V
P
E
W
G
G
P
L
------
L
P
K
-
A
Y
----
D
E
S
L
----
H
R
A
R
-
P
F
F
D
-
R
H
F
------------
P
E
H
G
----
A
R
V
A
W
G
S
--
S
--
W
M
L
D
P
Q
L
-
E
E
Y
-----
L
T
E
DS
N
I
----
I
Q
L
A
R
F
------
W
T
L
T
D
S
-
A
P
E
P
GNADG
D
S
S
I
----
L
-
E
-----------
F
V
F
R
Y
N
G
Q
P
L
D
E
L
P
Q
R
S
S
L
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R
A
V
I
A
H
L
K
A
G
R
H
W
H
M
R
T
G
F
V
K
L
P-----
12
Fugue
83.88
20%
-160
* C4 *
4FDT
2
?
A:
[21-425]
-----------------------------------MQT
K
I
Q
K
Y
A
G
T
A
M
PYPNRTDGMT
P
F
-
Y
I
N
H
L
G
R
H
G
A
--
R
F
P
T
S
R
K
A
L
D
K
V
E
K
V
L
-
V
S
A
Q
Q
E
NGLT
S
E
G
M
A
L
L
------
S
------
M
I
R
R
L
S
R
--------------
L
F
DGQWGKLS
K
L
G
E
T
E
Q
E
G
I
A
G
R
-------------
M
I
R
N
Y
------
P
Q
L
F
SNS
A
K
I
------------
E
A
I
A
T
Y
V
------------
P
---
R
S
I
N
S
M
D
A
F
L
S
C
M
I
R
H
NPA
L
Q
V
-
Q
-
R
S
E
G
-------
K
-----
Q
Y
N
H
I
L
R
F
F
-
D
L
N
K
S
Y
V
N
------------------------
Y
K
E
KG
D
W
L
P
I
Y
K
A
F
V
-------------------------
H
---------
K
K
---------
I
SP
V
P
I
M
K
K
F
LLNP
E
Q
Y
----
L
D
K
E
A
E
-----
E
F
V
M
A
L
F
S
V
------
A
A
I
L
P
D
T
S
I
-
P
L
N
L
E
D
LFT
L
D
E
W
H
R
Y
W
Q
T
Q
N
L
------------
R
Q
Y
M
S
KS
S
----
A
P
V
GK
M
L
P
V
A
I
A
W
P
L
L
S
E
F
I
R
S
A
------
Q
E
V
-
I
S
GK--
S
D
Y
Q
----
A
N
F
R
F
A
H
A
E
-
T
V
I
------------
P
F
V
S
----
L
M
G
I
E
K
T
DV
Q
--
V
C
R
P
D
S
V
-
S
V
Y
WKDYE
I
S
P
---
M
----
A
A
N
V
Q
W
------
L
F
Y
R
D
R
-
D
Q
R
I
------
W
V
K
----
I
-
L
-----------
L
N
E
E
A
A
A
L
P
I
S
T
A
C
F
P
Y
YS
W
E
K
T
R
I
F
F
N
Q
R
I
E
M
A
K
K
T
L
S
V
F
N------
13
Fugue
81.28
17%
-165
* C6 *
4AW9
7
LGMN_HUMAN
A:
[1-263]
----------------------------------------------------------
G
G
-
K
H
W
V
V
I
V
A
G
S
--
N
----
G
W
Y
N
Y
R
H
Q
A
D
A
-
C
H
A
Y
Q
---------
I
I
H
R
N
GIPD
E
------
Q
I
V
V
M
M
Y
DDIAYSEDNPTPGI
V
I
--------------
N
R
P
N
G
T
D
-------------
V
Y
Q
G
V
------
P
K
D
Y
-----
T
------------
G
E
D
V
T
P
Q
-------
N
---
F
L
---
A
V
L
R
G
D
A
E
A
V
K
G
I
G
S
-----
G
K
-
V
-
L
K
S
G
-------
P
--------
Q
D
H
V
F
I
-
Y
F
T
D
H
G
S
T
---------------------------------------------------------------------------
G
---------
I
--
L
V
F
P
N
E
-----
D
L
H
--------------------
V
K
D
L
------
N
E
T
I
H
Y
M
Y
K
-
H
K
M
-------------
Y
R
K
M
V
F
------------
Y
I
E
A
C
--
E
----
S
G
S
--
M
M
N
H
------
L
P
D
N
I
N
-
V
------
Y
A
T
-
T
A
ANPR
E
S
S
Y
----
A
C
Y
Y
D
E
K
R
S
-
T
Y
L
------------
G
D
W
Y
----
S
V
N
W
M
E
D
--
S
--
D
V
E
D
L
T
K
-
E
-------------------
T
L
H
K
Q
------
Y
H
L
V
K
S
H
T
Q
T
S
------
H
V
M
----
Q
-
Y
-----------
G
N
K
T
I
S
T
M
K
V
M
Q
F
Q
G
M
K
R------------------------------
14
Fugue
79.42
13%
-159
- C6 -
4FE7
1
XYLR_ECOLI
A:
[21-409]
---------------------------------------
M
F
T
K
R
H
R
I
T
----------
L
L
-
F
N
A
N
----
K
A
--
Y
D
R
Q
V
V
E
G
V
G
E
Y
L
Q
A
S
-
Q
S
E
W
D
---------
I
F
I
------
E
------
E
F
R
W
L
G
D
--------------
G
V
--------------
I
A
D
F
D
D
K
-------------
Q
I
E
Q
A
L
ADVD
V
P
I
V
G
-----
V
G
G
S
Y
HLAESYPP
V
H
Y
I
A
T
D
-------
N
---
Y
A
---
L
V
E
S
A
F
L
H
L
K
E
K
G
V
N
-----
R
F
-
A
-
F
Y
G
L
-------
P
ESSGK
R
W
A
T
E
R
E
Y
A
-
F
R
Q
L
V
A
E
E
K
Y
R
G
V
V
Y
Q
G
LETAPEN
W
Q
H
A
Q
N
R
L
A
D
----
W
L
Q
T
L
P
P
Q
T
-------------------------
G
---------
I
I
A
VT
D
A
R
A
R
H
I
--
L
Q
V
C
E
H
-----
L
H
I
PVPE
K
L
C
V
I
G
-----
I
D
N
E
E
L
T
R
Y
------
L
S
R
V
A
L
S
S
V
-
A
Q
G
A
R
Q
--------
M
G
Y
Q
A
A
K
L
------------
L
H
R
L
L
--
D
K
E
E
M
P
L
Q
--
R
I
L
V
------
P
P
V
R
V
I
E
R
------
R
S
T
-
D
Y
----
R
S
L
T
----
D
P
A
V
I
Q
A
M
H
-
Y
I
R
------------
N
H
A
C
KGIK
V
D
Q
V
L
D
A
--
V
--
G
I
S
R
S
N
L
-
E
K
R
-----
F
K
E
---
E
VGET
I
H
A
M
I
H
------
A
E
K
L
E
K
-
A
R
S
L
------
L
I
S
TTLS
I
-
N
-----------
E
I
S
Q
M
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
YDTT
P
K
E
Y
R
D
V
N
SE-------------
17
Fugue
75.77
15%
-109
- C4 -
1O20
-
PROA_THEMA
A:
[2-415]
D
E
L
L
E
K
A
K
K
V
R
E
A
W
D
V
L
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N
AT
T
R
E
K
N
K
A
I
K
K
I
A
E
K
L
D
E
R
R
K
E
I
L
E
A
N
R
----------
I
D
-
V
E
K
A
R
E
R
G
V
K
--
E
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L
V
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A
L
N
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K
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I
D
E
M
I
K
A
C
E
---------
T
V
I
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G
------
L
K
D
P
V
G
E
--------------
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I
--------------
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S
W
V
R
E
D
-------------
G
L
R
I
A
------
R
V
R
V
-----
P
------------
I
G
P
I
G
I
I
-------
Y
E
S
R
P
N
---
V
T
V
E
T
T
I
L
A
L
K
S
G
N
T
-----
I
L
-
L
-
R
G
G
S
-------
D
-----
A
L
N
S
N
K
A
I
V
S
A
I
R
E
A
L
K
E
------------------------
T
E
----
I
P
E
S
S
V
E
F
I
ENTDR
S
L
V
L
E
M
I
R
LREYLS
L
V
I
P
R
G
G
---------
Y
G
---------
L
--
I
S
F
V
R
D
-----
N
-
A
----
T
V
P
V
L
E
TGVGN
C
H
I
F
V
D
E
S
A
------
D
L
K
K
A
V
P
V
I
-
I
N
A
K
T
Q
--------
R
P
G
T
C
N
A
A
------------
E
K
L
L
V
--
H
----
E
K
I
--
A
K
E
F
------
L
P
V
I
V
E
E
L
------
R
K
H
-
G
V
----
E
V
R
G
----
C
E
K
T
R
E
I
V
P
-
D
V
V
PAT
E
D
D
W
P
TEYL
D
L
I
I
----
A
I
K
V
V
K
N
--
V
--
D
E
A
I
E
H
I
-
K
K
Y
-----
S
T
G
---
H
----
S
E
S
I
L
T
EN
Y
S
N
A
K
K
F
V
S
E
-
I
D
A
A
------
A
V
Y
----
V
-
N
ASTRFTDGGQF
G
F
G
A
E
I
G
I
S
T
Q
R
F
H
A
R
G
PVGLREL
T
T
Y
K
F
V
V
L
G
EYHVRE---------
19
Fugue
71.87
15%
-110
- C3 -
1FOU
-
PORTL_BPPH2
A:
[11-285]
----------------------------------------------------------------------------
S
I
N
E
I
Q
R
Q
K
R
N
R
W
-
F
I
H
Y
L
---------
N
Y
L
------
Q
------
S
L
A
Y
Q
L
F
--------------
E
W
--------------
E
N
L
P
P
T
I
-------------
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P
S
F
L
------
E
K
S
I
-----
H
------------
Q
F
--
G
Y
V
-------
G
---
F
Y
---
K
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P
V
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Y
I
A
C
N
G
A
L
S
-----
G
Q
-
R
D
V
Y
N
Q
-------
A
-----
T
V
F
R
A
A
S
P
V
-
Y
Q
K
E
-
F
K
L
------------------------
Y
N
----
Y
R
D
M
K
E
E
D
M
-------------------------
G
---------
V
V
---------
I
--
Y
N
-
N
D
M
-----
A
F
P
----
T
T
P
T
L
E
-----
L
F
A
A
E
L
A
E
L
------
K
E
I
I
S
V
N
Q
N
-
A
Q
K
T
P
V
------------------------------
L
I
R
--
A
----
N
D
N
--
N
Q
L
S
------
L
K
Q
V
Y
N
Q
Y
------
E
G
N
-
A
P
----
V
I
F
A
HEAL
D
S
D
S
I
E
V
F
K
-
T
D
A
------------
P
Y
V
V
----
D
K
L
N
A
Q
K
--
N
--
A
V
W
N
E
M
M
-
T
F
K
-----
L
Q
T
---------
D
E
Q
I
D
------
S
S
G
T
V
F
-
L
K
S
R
------
E
E
A
----
C
-
E
-----------
K
I
N
E
L
Y
G
L
N
V
K
V
K
F
R
Y
D
IV-----------------------------
21
Fugue
71.05
10%
-190
- C2 -
2I71
1
CSX1_SULSO
A:
[19-398]
-----------------------------------------------
F
----------
Q
G
M
A
S
I
V
F
S
T
I
G
N
PK
G
Y
Q
K
V
T
Y
E
I
D
G
E
K
F
E
S
-
N
V
S
V
L
---------
A
L
R
------
D
L
L
KVD
K
T
V
V
I
L
G
I
--------------
S
V
--------------
A
D
V
Y
N
C
K
YAD
Y
R
S
C
K
E
C
I
I
Q
N
S
K
N
D
L
GIS
E
-
S
Y
V
V
-----
A
------------
P
N
V
Y
Q
K
F
KGK
P
D
H
Y
F
---
T
Y
---
I
Y
Y
H
S
L
R
I
L
E
K
E
G
I
N
-----
E
V
-
F
-
I
D
T
T
HGINY
M
G
V
-----
L
A
K
E
A
I
Q
L
A
-
V
S
A
Y
A
A
K
S
------------------------
E
K
----
E
V
K
V
S
L
Y
N
S
-------------------------
D
PVGKDVS
D
T
V
K
---------
L
--
H
E
I
E
A
I
-----
K
I
S
----
P
L
S
G
L
K
-----
Y
V
T
Y
Q
I
L
N
K
------
D
K
N
F
F
N
K
I
F
-
S
D
S
V
N
A
--------
I
P
R
F
A
T
A
L
D
N
G---------
L
F
I
Y
L
--
S
----
E
K
D
--
S
S
L
H
------
L
K
R
L
E
D
D
L
------
S
K
D
P
L
L
----
T
P
S
E
----
N
E
I
N
V
V
Y
K
D
M
K
Y
A
------------
L
S
H
A
----
L
F
Y
V
I
S
R
--
F
SG
N
V
D
L
D
T
L
-
R
H
Y
-----
A
E
T
---
Y
----
A
D
K
V
T
R
------
A
I
I
E
N
E
-
V
D
K
I
------
E
K
Y
----
Q
M
G
-----------
S
E
R
K
L
L
G
E
Y
M
R
I
L
Y
A
H
G
GLPYAG
T
Y
V
Y
K
E
KD
K
V
Y
V
T
YGDK
I
D
E
I
E
R
Q
I
1
PsiBlast_PDB
50.81
28%
-98
- C7 -
2IZZ
1
P5CR1_HUMAN
A:
[22-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
M
-
S
V
G
F
I
G
--------
A
G
Q
L
A
F
A
L
A
K
G
F
T
A
A
GVLAA
H
K
I
M
A
--
S
----
S
P
D
--
M
D
L
A
------
T
V
S
A
L
R
K
M
G
V
K
L
T
P
H
N
K
-
E
T
----
V
Q
H
S
----
D
V
L
F
L
A
V
K
P
-
H
I
I
------------
P
F
I
L
---------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
41.67
20%
-190
- C- -
3B5D
1
EMRE_ECOLI
A:
[31-105]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
P
S
V
G
T
I
I
C
-
Y
C
A
------------
S
F
W
L
----
L
A
Q
T
L
A
Y
--
I
--
P
T
G
I
A
Y
A
I
W
S
G
-----
V
G
I
---
V
----
L
I
S
L
L
S
------
W
G
F
F
G
Q
-
R
L
D
L
------
P
A
I
----
I
-
G
-----------
M
M
L
I
C
A
G
V
L
I
I
N
L
L
S
---------------------------------
20
Fugue
40.62
32%
-6
- C5 -
1ZMM
-
DEF4_HUMAN
A:
[1-31]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
C
S
C
R
-------
L
---
V
F
CRR
T
E
L
R
V
G
N
C
L
I
G
-
G
V
S
-----
F
T
-
Y
-
C
C
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
39.29
17%
-135
- C- -
3B5D
1
EMRE_ECOLI
A:
[30-105]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
W
P
------
S
V
G
T
-----
I
------------
I
C
Y
C
----------
A
---
S
F
---
W
L
L
A
Q
T
L
A
Y
I
P
T
G
I
A
-----
Y
A
I
W
-
S
G
V
G
-------
I
-----
V
L
I
S
L
L
S
W
G
-
F
F
G
Q
R
L
D
L
------------------------
P
A
----
I
I
G
M
M
L
I
C
A
-------------------------
G
---------
V
L
---------
I
--
I
N
L
L
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
25.01
33%
281
- C7 -
2HAC
-
CD3Z_HUMAN
A:
[11-28]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Y
G
V
I
L
T
A
L
-
F
L
R
V
K
F
S
R
------------------------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
21.34
21%
212
* C7 *
1RH5
-
SECG_METJA
C:
[27-45]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
K
P
------------------------
E
H
----
V
I
G
V
T
V
A
F
V
-------------------------
I
---------
I
E
---------
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
14.05
24%
211
- C7 -
2WW9
-
SC6B2_YEAST
C:
[58-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
D
S
------------------------
L
V
----
V
L
F
L
S
V
G
F
I
-------------------------
F
---------
S
V
---------
I
--
A
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
13.38
0%
714
- C1 -
1Z65
-
PRND_MOUSE
A:
[8-16]
-----------------------------------------------
W
----------
W
V
-
A
I
L
C
M
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
2.53
21%
0
- C- -
3WU2
-
PSBT_THEVL
T:
[18-9]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
F
F
------
A
I
F
F
R
E
-
P
P
R
I
---------------------------------------------------------------------------