@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0721: (2015-12-17 )
MFTVIFVAVLQAALGMLSVRQEICRNPSQPHDFKSLVIVTNFY
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......------------..10........20..---------....-----..-30.....---..---------..40..---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
F
T
V
I
F
V
------------
A
V
L
Q
A
A
L
G
M
L
S
V
R
Q
E
I
---------CRNP-----SQ-P-HD
F
K
S
---
L
V
---------
I
V
TNFY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
90.48
20%
-154
- C4 -
1BXY
-
RL30_THETH
A:
[1-60]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
R
L
K
V
K
LVKSPIGYP
K
D
Q
K
A
A
L
K
A
L
G
L
R
R
L
Q
Q
E
R
---------
V
L
E
D
T
P
A
I
R
G
N
-
V
-
E
K
V
A
H
---
L
V
---------
R
V
E
V
V
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
68.72
15%
-121
- C6 -
1JW9
2
MOAD_ECOLI
D:
[1-81]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
K
V
L
F
F
------------
A
Q
V
R
E
L
V
G
T
D
A
T
E
V
--------------
A
-----
A
D
-
F
-
P
T
V
E
A
---
L
R
---------
Q
H
M
A
A
Q
SDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
68.30
25%
-103
- C5 -
5A61
6
?
A:
[2-430]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
M
A
Q
E
I
E
L
K
F
I
V
NHSA
V
E
A
L
R
D
H
L
N
T
LGGEHH
D
P
V
Q
L
L
N
I
Y
Y
E
T
PDN
W
L
R
G
H
D
M
G
L
R
I
R
G
E
NG
R
Y
E
M
T
M
K
V
A
G
R
V
T
GG
L
H
Q
R
P
E
Y
N
V
------------
A
L
S
E
P
T
L
D
L
A
Q
L
P
T
E
V
---------
W
P
N
G
-----
E
L
-
P
-
A
D
L
A
S
RVQ
P
L
---------
F
S
T
D
F
Y
R
E
K
W
L
V
A
V
DD
S
R
I
E
I
A
L
D
Q
G
E
V
K
A
GE
F
A
E
P
I
C
E
L
E
L
E
L
LSGD
T
R
A
V
L
K
L
A
N
Q
L
V
SQTG
L
R
Q
G
SLS
K
A
A
R
G
Y
H
L
A
Q
GN
P
A
R
E
I
K
P
T
T
I
L
H
V
A
AKAD
V
E
Q
G
L
E
A
A
F
E
L
A
L
A
Q
W
Q
Y
H
E
E
L
W
V
R
GNDAA
K
E
Q
V
L
A
A
I
G
L
V
R
H
A
L
M
L
F
GGIVPRKAS
T
H
L
R
D
L
L
T
Q
C
E
A
T
I
A
S
AVS
A
V
T
A
V
Y
S
T
E
T
A
M
A
K
L
A
L
T
E
W
L
V
S
KAWQPFLD
A
K
A
Q
G
K
I
S
DS
F
K
R
F
A
D
I
H
L
S
R
H
A
A
E
L
K
S
V
F
CQPLGDRYHDQ
L
P
R
L
T
R
D
I
D
S
I
L
L
L
AGYYD
P
V
V
A
Q
A
W
L
E
N
W
Q
G
L
R
H
A
I
A
T
GQ
R
I
E
I
E
H
F
R
N
E
A
N
N
QEPFWL
24
Fugue
62.74
16%
-142
- C6 -
4C1N
2
?
A:
[1-442]
GLT
G
L
E
I
Y
K
H
LPKKNCKECGQPT
C
L
A
F
A
M
Q
I
A
A
GKAGLDACPYVS
D
E
A
K
E
L
L
E
S
A
S
APP
V
A
L
I
K
V
G
KGEK
V
L
E
I
G
HETVLFRHDKRFEH
P
C
G
L
A
I
L
V
E
DTLS
E
G
E
I
K
E
R
V
E
K
I
N
K
L
V
F
D
R
VGQMHSVN
L
V
A
L
K
GSSQD
A
A
T
F
A
K
A
V
A
T
A
R
E
V
TD
L
P
F
I
L
I
G
T
P
E
Q
L
A
A
A
L
E
TEGANNPLLYAATADN
Y
E
Q
M
V
E
L
A
K
K
YN
V
P
L
T
V
S
A
K
G
L
D
A
L
A
E
L
V
Q
K
I
T
A
L
GYKN
L
I
L
D
PQPEN
I
S
E
G
L
F
Y
Q
T
Q
I
R
R
L
A
I
KKLFRPFG
Y
P
T
I
A
F
ALDEN
P
Y
Q
A
V
M
E
A
S
V
Y
I
A
K
YA
G
I
I
V
L
N
T
------------
V
E
P
A
D
I
L
P
L
I
T
L
R
L
N
I
---------
Y
T
D
P
-----
Q
K
-
P
-
I
A
V
E
P
---
K
V
---------
Y
E
I
L
N
P
GPD
A
P
V
F
I
T
T
NF
S
L
T
Y
F
C
V
A
G
D
V
E
G
A
R
I
P
A
Y
I
L
PVDTDGTS
V
L
T
A
W
A
A
GKFT
P
E
K
I
A
Q
F
L
K
E
SG
I
A
E
K
V
NHR
K
A
I
L
PGGVAVL
S
G
K
L
Q
E
L
SG
W
E
I
L
V
G
P
RESSG
I
N
S
F
I
K
Q
RW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
58.23
28%
-100
* C6 *
1SYQ
-
B:
[1-25]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
L
Q
A
A
K
G
L
A
G
A
V
S
E
L
---------
L
R
S
A
-----
Q
P
-
A
-
S
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
58.11
29%
-74
- C3 -
2RPS
-
?
A:
[1-32]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
------------
Q
I
L
R
C
P
D
G
M
Q
M
L
R
S
G
Q
---------
C
V
A
T
-----
T
E
-
P
P
F
D
P
D
S
---
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
54.04
43%
-81
- C7 -
1DOK
-
CCL2_HUMAN
A:
[47-60]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
A
K
E
I
---------
C
A
D
P
-----
K
Q
-
K
-
W
V
Q
D
S
---
M
D
---------
H
L
D
K
Q
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
50.92
18%
-94
* C5 *
3DF0
-
C:
[2-86]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
------------
D
D
L
I
D
T
L
G
E
C
V
V
L
D
P
M
D
S
T
Y
L
E
A
L
G
I
K
E
G
-----
T
I
-
P
-
P
E
Y
R
K
---
L
L
E
KNEHAI
D
A
L
S
S
D
F
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
45.66
38%
-36
- C1 -
1O8R
-
GUC2A_HUMAN
A:
[45-60]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
I
L
---------
C
S
N
P
-----
N
F
-
P
-
E
E
L
K
P
---
L
C
---------
K
E
P
N
A
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
45.03
31%
-83
- C7 -
1G91
-
CCL23_HUMAN
A:
[46-58]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
R
R
F
---------
C
A
N
P
-----
S
D
-
K
-
Q
V
Q
V
C
---
M
R
---------
M
L
K
L
D
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
44.95
31%
-37
- C7 -
1TVX
-
CXCL7_HUMAN
A:
[62-74]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
R
K
I
---------
C
L
D
P
-----
D
A
-
P
-
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
44.40
31%
-69
- C7 -
2Q8T
-
CCL14_HUMAN
A:
[51-63]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
G
H
S
V
---------
C
T
N
P
-----
S
D
-
K
-
W
V
Q
D
Y
---
I
K
---------
D
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
43.60
33%
-55
- C7 -
1MGS
-
GROA_HUMAN
A:
[44-58]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
N
G
R
K
A
---------
C
L
N
P
-----
A
S
-
P
-
I
V
K
K
I
---
I
E
---------
K
M
L
N
S
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
42.65
29%
-48
* C7 *
1ZXT
-
?
A:
[46-59]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
G
R
Q
I
---------
C
A
D
P
-----
S
K
-
N
-
W
V
R
Q
L
---
M
Q
---------
R
L
P
A
I
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
42.28
27%
-76
- C7 -
1HA6
-
CCL20_MOUSE
A:
[41-55]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
K
K
R
K
S
V
---------
C
A
D
P
-----
K
Q
-
N
-
W
V
K
R
A
---
V
N
---------
L
L
S
L
R
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
42.05
11%
-89
- C6 -
1ZFU
-
A:
[1-40]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
F
G
C
N
G
P
W
D
E
D
D
M
Q
---------
C
H
N
H
-----
C
K
S
I
-
K
G
Y
K
G
---
G
Y
---------
C
A
K
G
G
F
V
C
K
C
Y----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
41.39
22%
-41
- C7 -
2Q8R
-
CCL14_HUMAN
E:
[39-56]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
T
K
R
G
H
S
V
---------
C
T
N
P
-----
S
D
-
K
-
W
V
Q
D
Y
---
I
K
---------
D
M
K
E
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
39.31
23%
-49
- C7 -
1B3A
2
CCL5_HUMAN
A:
[44-56]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
R
Q
V
---------
C
A
N
P
-----
E
K
-
K
-
W
V
R
E
Y
---
I
N
---------
S
L
E
M
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
39.14
13%
-45
- C7 -
1VMC
-
SDF1_HUMAN
A:
[44-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
N
N
R
Q
V
---------
C
I
D
P
-----
K
L
-
K
-
W
I
Q
E
Y
---
L
E
---------
K
A
L
N
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
38.41
20%
-50
- C7 -
1ICW
-
IL8_HUMAN
A:
[38-57]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
I
I
V
K
L
S
D
G
R
E
L
---------
A
L
D
P
-----
K
E
-
N
-
W
V
Q
R
V
---
V
E
---------
K
F
L
K
R
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------