@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0759: (2015-12-18 )
MEQNIFSLLIQKKSYKKLETLLKLKKLKVFMPLSLQENLLFIFIKDSKLLFAFKDLWASKEFNQRFAKEISHFLNTQGHACGLDELDALEILGYVPKDSLEKANFYAPIKKQAQFYRPSALGLFHNPIKDARLHECFEKARALIHYQRSFFEE
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......-...10.-....-...20........30........-----40........----50........----60....-....-70........--80------......-..90----------......--.--.100.......110----..---......120.......-130..--.-..-..--.140.......150.----------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MEQ
N
I
F
-
S
L
L
I
QK-
K
S
Y
K
-
K
L
E
T
L
L
K
L
K
K
L
K
V
F
MPLSLQE
N
L
-----
L
F
I
F
IKDS
K
L
----
L
F
A
F
K
D
L
WAS----
K
E
F
N
Q
R
-
F
A
K
E
-
I
S
H
F
L
NTQGH--AC------GL
D
E
L
D
-
A
L
E
I
----------LGYVPK--D--SLEKANFYAP
I
K
K
-----QA---QFYRPSALGLFHNPI
K
-
D
-
A
R
L
--
H
-
E
C
-
F
E
--
K
A
R
A
L
I
H
Y
Q
R
S
F
FEE----------------------------------------------------
24
Fugue
78.54
21%
-43
- C5 -
4LEU
-
PP266_ARATH
A:
[71-252]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLIG
K
E
A
L
F
V
I
L
G
L
K
R
L
K
E
D
-
D
E
K
L
D
K
-
F
I
K
T
-
H
V
F
R
L
L
K
L
D
M
L
A
V
I
G
E
L
E
R
Q
E
E
T
A
L
A
I
K
M
F
E
V
I
Q
K
Q
E
W
YQPD
V
F
M
Y
K
D
L
I
V
S
----
L
A
K
S
K
R
-
M
D
E
A
-
M
A
L
W
E
K
M
K
K
E
--
N
L
------
F
P
D
S
Q
T
-
Y
T
E
V
----------
I
R
G
F
L
R
--
D
GC
P
A
D
A
M
N
V
Y
E
D
M
L
K
SPDPP
E
E
---
L
P
F
R
V
L
L
K
G
L
L
P
H
P
L
L
-
R
-
N
K
V
--
K
-
K
D
-
F
E
--
E
L
F
P
E
K
H
A
Y
D
P
P
E
E
-----------------------------------------------------
19
Fugue
75.43
18%
-64
- C4 -
4O5J
3
?
A:
[27-400]
LKN
L
N
E
K
Y
E
Q
L
S
Q
Y
L
N
Q
V
A
S
L
K
Q
S
I
Q
N
A
N
N
I
E
L
V
N
S
S
L
N
Y
L
K
S
F
T
N
N
N
Y
NSTTQS
P
I
F
N
A
V
Q
A
V
I
T
S
V
L
G
F
W
S
L
Y
AGNYFTFFVGKKVD
S
G
Q
P
A
SVQGNPPFKTIIENCSGIENCAMD
Q
T
T
Y
D
K
M
K
K
L
A
E
D
L
Q
A
A
Q
TNSATKGNNLCALSGCAATSNPPNST
V
S
N
A
L
N
L
A
Q
Q
L
M
D
L
I
A
N
TK
T
A
M
M
W
K
N
I
V
-
I
S
G
V
S
N
-
T
S
-
G
-
A
I
T
S
T
N
Y
P
T
Q
Y
A
V
F
N
N
I
K
A
M
I
P
I
-----
L
Q
Q
A
V
T
L
S
Q
S
----
N
H
T
L
S
A
S
L
Q
A
QATG
S
Q
T
N
P
K
-
F
A
K
D
-
I
Y
T
F
A
Q
N
Q
K
Q
--
V
I
------
S
Y
A
Q
-
D
-
I
F
N
L
----------
F
N
S
I
P
----------
A
E
Q
Y
K
Y
L
E
K
------
A
---
Y
L
K
I
P
N
A
G
S
T
P
T
N
P
Y
R
-
Q
V
V
N
L
--
N
-
Q
E
-
V
Q
--
T
I
K
N
N
V
S
Y
Y
G
N
R
V
D
A
A
L
S
V
A
R
D
V
Y
N
L
K
S
N
Q
A
E
I
V
T
A
Y
N
D
A
K
T
L
S
E
E
I
S
K
LPH---------------
25
Fugue
69.95
14%
-63
- C4 -
4EI7
1
REPX_BACC1
A:
[3-384]
----GNF
S
E
I
E
S
Q
G
NISLK
F
G
F
L
G
L
G
M
G
G
C
A
I
A
A
E
C
A
N
KETQIKNNKYP
Y
R
A
I
L
V
N
T
N
S
Q
D
F
N
K
IEIKNTGN
V
R
K
I
Q
LEGYEQGAARN
P
Q
V
G
E
E
A
F
V
K
H
E
T
K
I
F
E
A
V
K
Q
E
F
E
DRD
F
I
W
ITCGLGGG
T
G
T
G
A
L
L
K
A
I
E
M
L
Y
E
H
DYNFGLL
L
T
L
P
R
DAEAL
K
V
L
E
N
A
T
S
R
I
R
S
I
A
M
N
QEAFGSIVL
I
D
N
A
K
L
-
Y
R
K
F
E
E
-
E
N
P
S
-
A
L
A
N
E
Y
T
S
Y
S
N
K
Y
I
A
D
A
L
H
E
I
N
L
-----
V
T
S
S
F
T
P
F
S
D
----
T
H
-----
F
D
A
----
S
E
F
A
Q
V
-
I
N
T
P
G
V
L
S
L
A
K
L
E
L
K
--
S
N
------
Q
L
D
T
E
N
-
P
L
G
Y
----------
L
T
Q
L
-
G
--
N
--
A
L
E
K
G
V
L
Y
D
T
E
R
E
-----
E
L
---
E
S
A
K
K
S
A
L
S
I
V
T
S
P
L
R
-
A
-
G
R
L
YN
F
-
S
F
-
L
N
--
Q
M
E
N
F
L
K
E
R
T
P
Y
V
D
E
RPI
A
P
Y
V
NKHTTKKEED
I
V
K
F
Y
S
V
V
A
GLPLP
K
R
V
S
D
I
I
D
E
I
T
R
I
K
E
E
R
E
Q
A
N
21
Fugue
69.86
10%
-95
* C5 *
3UT4
-
?
A:
[2-129]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
L
R
-
D
L
I
P
K
H
-
K
F
D
N
-
S
T
I
D
Q
L
C
K
L
I
D
N
E
I
E
P
I
-
I
F
D
L
L
-----
K
W
L
Q
D
Y
N
W
P
I
----
A
K
D
I
L
P
V
V
V
L
------
H
Q
S
I
-
A
M
P
H
-
I
L
T
I
L
Q
G
N
--------------
D
I
M
W
-
K
Y
W
V
----------
I
K
L
M
I
P
--
Y
-----------
L
I
Y
P
-----
N
K
---
Q
L
V
K
S
E
L
E
R
L
S
S
L
E
I
I
-
N
-
E
D
I
--
R
-
E
I
-
V
N
--
L
S
K
D
Y
L
H
F
Y
Y
---------------------------------------------------------
20
Fugue
66.35
20%
-51
- C2 -
4Q6V
-
LPOB_SALTY
A:
[1-135]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
D
W
N
G
A
M
Q
P
L
V
S
K
M
L
Q
A
D
-
G
V
T
------------------------------
A
G
S
V
L
----
L
V
D
S
V
N
N
R
T
N
----
G
S
L
N
A
N
-
E
A
T
E
T
L
R
N
A
L
A
N
N
G
K
FT
L
V
------
S
V
Q
Q
L
S
M
A
K
Q
Q
----------
L
G
L
S
P
Q
--
D
--
S
L
G
T
R
S
K
A
I
G
I
A
R
-----
N
V
GAQ
Y
V
L
Y
S
S
A
S
G
N
V
N
A
P
------
A
L
--
Q
M
Q
L
M
L
V
--
Q
T
G
E
I
I
W
S
G
K
G
A
V
Q
Q
----------------------------------------------------
2
PsiBlast_PDB
65.18
26%
-20
- C4 -
4EI9
-
REPX_BACC1
A:
[236-311]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
E
-
F
A
Q
V
I
N
T
P
G
V
--
L
S
L
A
K
L
E
L
K
S
N
Q
L
D
-
T
E
N
P
----------
L
G
Y
L
T
Q
L
G
N
--
A
L
E
K
G
V
L
Y
D
T
E
R
E
-----
E
L
---
E
S
A
K
K
S
A
L
S
I
V
T
S
P
L
R
-
A
-
G
R
L
--
Y
-
N
F
-
S
F
--
L
N
Q
M
E
N
F
L
K
E
R
T
P
Y
V
----------------------------------------------------
3
PsiBlast_PDB
65.13
26%
-30
- C4 -
4EI8
-
REPX_BACC1
A:
[236-311]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
E
-
F
A
Q
V
I
N
T
P
G
V
--
L
S
L
A
K
L
E
L
K
S
N
Q
L
D
-
T
E
N
P
----------
L
G
Y
L
T
Q
L
G
N
--
A
L
E
K
G
V
L
Y
D
T
E
R
E
-----
E
L
---
E
S
A
K
K
S
A
L
S
I
V
T
S
P
L
R
-
A
-
G
R
L
--
Y
-
N
F
-
S
F
--
L
N
Q
M
E
N
F
L
K
E
R
T
P
Y
V
----------------------------------------------------
1
PsiBlast_PDB
63.72
26%
-26
- C4 -
4EI7
-
REPX_BACC1
A:
[236-311]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
E
-
F
A
Q
V
I
N
T
P
G
V
--
L
S
L
A
K
L
E
L
K
S
N
Q
L
D
-
T
E
N
P
----------
L
G
Y
L
T
Q
L
G
N
--
A
L
E
K
G
V
L
Y
D
T
E
R
E
-----
E
L
---
E
S
A
K
K
S
A
L
S
I
V
T
S
P
L
R
-
A
-
G
R
L
--
Y
-
N
F
-
S
F
--
L
N
Q
M
E
N
F
L
K
E
R
T
P
Y
V
----------------------------------------------------
4
PsiBlast_PDB
52.88
35%
-60
- C4 -
4O8W
-
?
A:
[67-106]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
L
-----
M
I
D
I
L
K
D
P
E
M
----
E
K
A
M
V
D
V
L
K
S
----
K
E
F
R
Q
H
-
L
Q
K
V
-
I
T
E
T
L
N
S
P
L
Y
--
Q
A
------
K
I
Q
D
M
L
-
M
K
A
A
----------
E
K
------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
51.59
17%
-14
- C4 -
2Q97
1
?
T:
[1-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
Q
E
L
G
-
L
L
R
P
E
E
-
R
L
I
A
-
G
Q
A
K
A
A
A
L
Q
T
V
H
Q
L
G
A
V
A
L
T
------------
P
E
Q
A
K
A
----
A
L
L
D
E
I
L
R
A
T
----
Q
N
L
D
L
R
-
K
Y
E
N
-
L
N
---------------------------------------------------
T
E
Q
Q
K
A
Y
E
Q
V
Q
R
-----
D
L
---
S
Q
L
S
P
E
---------
T
-
K
-
A
L
L
--
I
-
E
N
-
Q
R
--
K
E
K
T
L
L
E
K
A
R
K
L
F
Q
R
----------------------------------------------------
6
PsiBlast_PDB
47.15
30%
-2
- C4 -
1Z2L
2
ALLC_ECOLI
A:
[362-413]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
I
F
A
P
R
V
P
-----
T
C
---
M
I
F
I
P
S
I
N
G
I
S
H
N
P
A
E
-
R
-
T
N
I
--
T
-
D
L
-
A
E
G
V
K
T
L
A
L
M
L
Y
Q
L
A
W
Q
K
-----------------------------------------------------
22
Fugue
46.16
14%
-23
- C4 -
2GUZ
-
TIM16_YEAST
B:
[1-65]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
L
D
E
-
S
C
K
I
----------
L
N
I
E
E
S
--
K
G-
D
L
N
M
D
K
I
N
N
R
F
N
Y
-----
L
F
---
E
V
N
D
K
E
K
G
G
S
F
Y
L
Q
S
K
-
V
-
Y
R
A
--
A
-
E
R
-
L
K
--
W
E
L
A
Q
R
E
K
-----------------------------------------------------------
5
PsiBlast_PDB
45.79
19%
-2
- C4 -
3ZUK
6
?
A:
[413-493]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
M
T
----
P
Q
T
R
Q
R
-
A
L
A
K
-
L
N
K
F
T
A
K
V
G
Y
--
P
I
------
K
W
R
D
Y
S
-
K
L
A
I
D
RDD
L
Y
G
N
V
Q
R
G
Y
A
V
N
--
H
--
D
R
E
L
A
K
L
F
G
P
V
D
R
-----
D
E
---
W
F
M
T
P
Q
T
V
N
A
Y
Y
N
P
G
M
-
N
-
E
I
V
--
F
-
P
A
-
A
I
--
L
Q
P
P
F
F
D
P
Q
A
D
E
A
A
N
----------------------------------------------------
8
HHSearch
45.10
17%
-57
- C4 -
2RBD
1
?
A:
[34-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
Y
R
S
F
I
N
H
T
G
-
D
-
E
D
L
--
K
-
N
L
-
I
D
--
E
A
I
Q
A
M
Q
D
E
N
H
Q
L
E
E
----------------------------------------------------
12
HHSearch
43.29
12%
-40
- C4 -
2E0G
-
DNAA_ECOLI
A:
[33-66]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
N
T
L
----
A
L
Y
A
P
N
R
F
V
L
----
D
W
V
R
D
K
Y
L
N
-
N
-
I
N
G
L
L
T
S
F
C
G
--
A
D
------
A
P
Q
L
R
F
-
E
V
G
T
----------
K
P
V
T
Q
T
--
P
--
Q
A
A
V
T
S
N
V
A
A
P
A
Q
-----
V
A
---
Q
T
Q
P
Q
R
----------------------------------------------------------------------------------------------
16
HHSearch
40.51
9%
-45
- C4 -
2WP0
-
DNAA_HELPY
C:
[40-74]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
S
D
I
A
----
F
F
Y
A
P
N
Q
V
L
C
----
T
T
I
T
A
K
-
Y
G
A
L
-
L
K
E
I
L
S
Q
N
K
G
--
M
H
------
L
A
H
S
V
D
-
V
R
I
E
----------
V
A
P
-----------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
35.73
39%
80
- C4 -
1PD3
-
NEP_I34A1
A:
[67-84]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
L
--
G
-
Q
K
-
F
E
--
E
I
R
W
L
I
E
E
V
R
---------------------------------------------------------
9
HHSearch
31.15
4%
-8
- C4 -
3PVV
2
DNAA_MYCTA
A:
[72-100]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
K
I
L
S
E
M
A
E
R
-
R
E
V
--
F
-
D
H
-
V
K
--
E
L
T
T
R
I
R
Q
R
S
K
--------------------------------------------------------
23
Fugue
27.55
36%
78
* C4 *
4MGP
-
A:
[1-22]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
G
K
F
L
H
A
A
----
K
K
F
A
K
A
-
F
V
A
E
-
I
M
N
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
26.67
12%
-7
- C4 -
2MJF
-
B:
[5-38]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
T
-
K
A
F
D
D
I
Y
Q
N
S
A
E
L
Q
E
L
L
K
-
Y
-
N
T
V
K
F
H
L
-----
A
K
V
Y
R
I
L
S
S
T
----
V
N
D
G
S
S
G
K
M
N
----
S
D
L
Q
K
E
-
L
A
V
N
-
Y
L
N
T
L
R
Y
G
G
I
--
H
Y
------
N
E
A
I
E
E
-
F
C
Q
I
----------
L
L
D
K
L
N
--
A
--
V
K
K
------------------------------------------------------------------------------------------------------------------------