@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_1283: (2015-12-22 )
MQKKIFLLEDDYLLSESIKEFLEHLGYEVFCAFNGKEAHERLSVERFNLLLLDVQVPEMNSLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFFNDDPIEIMPNIFYHQHALNVKGKKEILAPKTAQLLEYFLEHKGQIISSQALENNLWEQAIDDSTLRTYIKVLRKLLGKNCIETHKGVGYRFNPL
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70...--.....80........90........100.....-..110....---...120.---.---..-----.-----.------.130-------..--......--------140...-....150.......160.......170...--...--.-180.-......190----......-----.-----200----........210.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
Q
K
K
I
F
L
LED
D
Y
L
L
S
E
S
I
K
E
F
L
E
HLG
Y
E
V
F
C
A
FNG
K
E
A
H
E
R
L
S
V
E
R
F
N
L
L
L
L
D
VQVPEM
N
S
L
E
L
F
K
R
I
K
NDFLI--ST
P
V
I
F
I
T
ALQDNAT
L
K
N
A
FNLG
A
S
D
YLKKPF
D
-
L
D
E
L
E
A
R
I
K
---
R
F
FNDD
P
---
I
---
E
I
-----
M
-----
P
------
N
I
F
--------
Y
H
--QHALNV--------KGKKEI-LAP
K
T
A
Q
L
L
E
Y
F
L
E
HKGQ
I
I
S
S
Q
A
L
E
N
N
L
W
--
E
QA--I-
D
D
S
T
-
L
R
T
Y
I
K
V
L
R
----
K
L
LG
K
N
-----
C
-----
I
E
-----THKGVGYRFNPL
1
PsiBlast_PDB
87.83
30%
-128
- C4 -
1KGS
6
?
A:
[4-220]
---
R
V
L
V
V
E
D
E
R
D
L
A
D
L
I
T
E
A
L
K
K
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M
F
T
V
D
V
C
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ATK
K
A
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K
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Q
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K
K
-----
I
-----
I
H
-----
T
V
R
G
I
G
Y
V
A
R
D
E
107
HHSearch
87.42
29%
-128
- C4 -
1KGS
6
?
A:
[2-225]
-
N
V
R
V
L
V
V
E
D
E
R
D
L
A
D
L
I
T
E
A
L
K
K
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M
F
T
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K
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H
L
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-------
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F
S
D
V
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R
S
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----
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K
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K
G
FKKK-
I
-----
I
H
-----
T
V
R
G
I
G
Y
V
A
R
D
E
102
HHSearch
84.59
25%
-115
- C3 -
2GWR
3
MTRA_MYCTU
A:
[5-227]
-
R
Q
R
I
L
V
V
D
D
D
A
S
L
A
E
M
L
T
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V
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---
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L
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I
A
------
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V
E
--------
I
D
VP
A
H
K
V
T
R
--------
N
G
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Q
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L
T
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L
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L
L
V
A
L
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P
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Q
V
F
T
R
D
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L
L
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--
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Y
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---A
D
T
R
L
-
V
N
V
H
V
Q
R
L
R
----
A
K
V
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K
D
PENPT
V
-----
V
L
-----
T
V
R
G
V
G
Y
K
A
G
P
P
13
PsiBlast_PDB
83.24
25%
-125
- C4 -
4KFC
-
KDPE_ECOLI
A:
[6-225]
----
V
L
I
V
E
D
E
Q
A
I
R
R
F
L
R
T
A
L
E
G
D
G
M
R
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D
L
R
Q
--
W
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A
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S
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G
A
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Y
L
S
K
P
F
G
-
I
G
E
L
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A
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---
V
A
L
R
R
H
S
--------------
A
-----
P
------
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P
L
--------
V
K
--
F
S
D
V
T
V
D
LAAR
V
I
H
R
G
E
E
E
V
H
L
T
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F
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L
L
A
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L
L
N
N
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L
L
N
Q
V
W
G-
P
N
A
--
V
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-----
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-----
A
R
PRHFI
T
A
T
G
I
G
Y
R
F
M
L
-
12
PsiBlast_PDB
81.25
25%
-134
- C4 -
4KNY
2
KDPE_ECOLI
A:
[6-225]
----
V
L
I
V
E
D
E
Q
A
I
R
R
F
L
R
T
A
L
E
G
D
G
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A
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L
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--
W
S
--
A
V
P
V
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V
L
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A
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R
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P
N
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R
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L
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----
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-----
P
-----
A
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PRHFI
T
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G
I
G
Y
R
F
M
L
-
101
HHSearch
78.27
24%
-120
- C4 -
2HQR
-
?
A:
[2-216]
---
R
V
L
L
I
E
K
N
S
V
L
G
G
E
I
E
K
G
L
N
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G
F
M
A
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T
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G
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Y
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----
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--------
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----
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-----
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104
HHSearch
76.28
25%
-104
- C3 -
1YS7
4
PRRA_MYCTU
A:
[8-232]
--
P
R
V
L
V
V
D
D
D
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D
V
L
A
S
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S
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-----
S
-----
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T
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P
L
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G
R
R
A
R
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--------
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L
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L
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V
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M
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106
HHSearch
71.92
26%
-97
- C3 -
2OQR
8
REGX3_MYCTU
A:
[4-229]
-
A
T
S
V
L
I
V
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D
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A
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M
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S
V
P
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A
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V
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A
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L
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E
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-----
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-----
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G
V
L
E
S
G
P
V
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--------
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D
VE
R
H
V
V
S
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--------
N
G
D
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T
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L
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L
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A
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PANPV
H
-----
L
V
-----
T
V
R
G
L
G
Y
K
L
E
--
2
PsiBlast_PDB
70.95
25%
-97
- C3 -
2OQR
8
REGX3_MYCTU
A:
[4-228]
-
A
T
S
V
L
I
V
E
D
E
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S
L
A
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A
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L
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M
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G
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L
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R
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-----
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------
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V
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GPVRMD
V
E
--
R
H
V
V
S
V
--------
N
G
D
T
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T
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L
P
L
K
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L
L
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L
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R
N
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G
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L
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W
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D
Y
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--
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T
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L
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V
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----
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A
D
-----
P
ANPVH
L
V
-----
T
V
R
G
L
G
Y
K
L
E
--
23
PsiBlast_CBE
70.88
31%
-129
- C4 -
3LTE
1
?
S:
[7-124]
--
K
R
I
L
V
V
D
D
D
Q
A
M
A
A
A
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R
V
L
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P
A
I
M
T
L
D
L
S
M
P
K
L
D
G
L
D
V
I
R
S
L
R
Q
N
K
V
A
--
N
Q
P
K
I
L
V
V
S
G
L
D
K
A
K
L
Q
Q
A
V
T
E
G
A
D
D
Y
L
E
K
P
F
D
-
N
D
A
L
L
D
R
I
H
---
D
L
V
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------
40
PsiBlast_CBE
70.64
31%
-141
- C4 -
3W9S
2
?
A:
[2-116]
---
K
I
L
V
I
E
D
D
A
L
L
L
Q
G
L
I
L
A
M
Q
S
E
G
Y
V
C
D
G
V
S
T
A
H
E
A
A
L
S
L
A
S
N
H
Y
S
L
I
V
L
D
L
G
L
P
D
E
D
G
L
H
F
L
S
R
M
R
R
E
K
M
---
T
Q
P
V
L
I
L
T
A
R
D
T
L
E
D
R
I
S
G
L
D
T
G
A
D
D
Y
L
V
K
P
F
A
-
L
E
E
L
N
A
R
I
R
---
A
L
L
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------
39
PsiBlast_CBE
70.62
31%
-139
- C4 -
3W9S
2
?
B:
[2-116]
---
K
I
L
V
I
E
D
D
A
L
L
L
Q
G
L
I
L
A
M
Q
S
E
G
Y
V
C
D
G
V
S
T
A
H
E
A
A
L
S
L
A
S
N
H
Y
S
L
I
V
L
D
L
G
L
P
D
E
D
G
L
H
F
L
S
R
M
R
R
E
K
M
---
T
Q
P
V
L
I
L
T
A
R
D
T
L
E
D
R
I
S
G
L
D
T
G
A
D
D
Y
L
V
K
P
F
A
-
L
E
E
L
N
A
R
I
R
---
A
L
L
R
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_CBE
70.24
31%
-126
- C4 -
3LTE
1
?
F:
[7-124]
--
K
R
I
L
V
V
D
D
D
Q
A
M
A
A
A
I
E
R
V
L
K
R
D
H
W
Q
V
E
I
A
H
N
G
F
D
A
G
I
K
L
S
T
F
E
P
A
I
M
T
L
D
L
S
M
P
K
L
D
G
L
D
V
I
R
S
L
R
Q
N
K
V
A
--
N
Q
P
K
I
L
V
V
S
G
L
D
K
A
K
L
Q
Q
A
V
T
E
G
A
D
D
Y
L
E
K
P
F
D
-
N
D
A
L
L
D
R
I
H
---
D
L
V
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------
24
PsiBlast_CBE
70.22
31%
-126
- C4 -
3LTE
1
?
R:
[7-123]
--
K
R
I
L
V
V
D
D
D
Q
A
M
A
A
A
I
E
R
V
L
K
R
D
H
W
Q
V
E
I
A
H
N
G
F
D
A
G
I
K
L
S
T
F
E
P
A
I
M
T
L
D
L
S
M
P
K
L
D
G
L
D
V
I
R
S
L
R
Q
N
K
V
A
--
N
Q
P
K
I
L
V
V
S
G
L
D
K
A
K
L
Q
Q
A
V
T
E
G
A
D
D
Y
L
E
K
P
F
D
-
N
D
A
L
L
D
R
I
H
---
D
L
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
70.11
37%
-142
- C4 -
1NXX
-
?
A:
[2-113]
--
K
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
Q
P
D
I
I
I
L
D
L
----
I
D
G
L
E
V
A
K
T
I
R
K
T
S
----
S
V
P
I
L
M
L
S
A
K
D
S
E
F
D
K
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
S
-
N
R
E
L
Q
A
R
V
K
---
A
L
L
R
R
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
69.93
37%
-132
- C4 -
1NXV
-
?
A:
[2-113]
--
K
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
Q
P
D
I
I
I
L
D
L
M
L
P
E
I
D
G
L
E
V
A
K
T
I
R
K
T
S
----
S
V
P
I
L
M
L
S
A
K
D
S
E
F
D
K
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
S
-
N
R
E
L
Q
A
R
V
K
---
A
L
L
R
R
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
69.87
31%
-123
- C4 -
3LTE
1
?
T:
[7-124]
--
K
R
I
L
V
V
D
D
D
Q
A
M
A
A
A
I
E
R
V
L
K
R
D
H
W
Q
V
E
I
A
H
N
G
F
D
A
G
I
K
L
S
T
F
E
P
A
I
M
T
L
D
L
S
M
P
K
L
D
G
L
D
V
I
R
S
L
R
Q
N
K
V
A
--
N
Q
P
K
I
L
V
V
S
G
L
D
K
A
K
L
Q
Q
A
V
T
E
G
A
D
D
Y
L
E
K
P
F
D
-
N
D
A
L
L
D
R
I
H
---
D
L
V
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------
31
PsiBlast_CBE
69.84
32%
-135
- C4 -
1SRR
1
SP0F_BACSU
C:
[2-119]
M
N
E
K
I
L
I
V
D
D
Q
S
G
I
R
I
L
L
N
E
V
F
N
K
E
G
Y
Q
T
F
Q
A
A
N
G
L
Q
A
L
D
I
V
T
K
E
R
P
D
L
V
L
L
D
M
K
I
P
G
M
D
G
I
E
I
L
K
R
M
K
---
V
I
DE
N
I
R
V
I
I
M
T
A
Y
G
E
L
D
M
I
Q
E
S
K
E
L
G
A
L
T
H
F
A
K
P
F
D
-
I
D
E
I
R
D
A
V
K
---
K
Y
L
P
L
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
69.82
37%
-131
- C4 -
1NXW
1
?
A:
[2-113]
--
K
K
I
L
I
V
D
D
E
K
P
I
S
D
I
I
K
F
N
M
T
K
E
G
Y
E
V
V
T
A
F
N
G
R
E
A
L
E
Q
F
E
A
E
Q
P
D
I
I
I
L
D
L
M
L
P
E
I
D
G
L
E
V
A
K
T
I
R
K
T
S
----
S
V
P
I
L
M
L
S
A
K
D
S
E
F
D
K
V
I
G
L
E
L
G
A
D
D
Y
V
T
K
P
F
S
-
N
R
E
L
Q
A
R
V
K
---
A
L
L
R
R
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------
33
PsiBlast_CBE
69.75
32%
-136
- C4 -
1PEY
1
SP0F_BACSU
C:
[2-119]
M
N
E
K
I
L
I
V
D
D
Q
S
G
I
R
I
L
L
N
E
V
F
N
K
E
G
Y
Q
T
F
Q
A
A
N
G
L
Q
A
L
D
I
V
T
K
E
R
P
D
L
V
L
L
D
M
K
I
P
G
M
D
G
I
E
I
L
K
R
M
K
---
V
I
DE
N
I
R
V
I
I
M
T
A
Y
G
E
L
D
M
I
Q
E
S
K
E
L
G
A
L
T
H
F
A
K
P
F
D
-
I
D
E
I
R
D
A
V
K
---
K
Y
L
P
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------