@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0144: (2016-03-12 )
MEEQEIIEKVEILPNNFSENDSIYISQENIKNLVLFSKENQTVLELLITPFLICVNSGLKYELHYYEISTEISKNDTEIIGFPFGNKLPKEITDNISPKLFVRREDYSAFENFLSQYFNAMKSMGFADDKQAIGMIEHGATLFYEVL
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------......------...10.......-.20....----....30......----------.---------.------40........--50-----------...--......---60-.....-....70........80-.-..---------.--....90.-..-----.....100.--......110----------------.......120.......130.-....----.-.140.....----------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------M
E
E
Q
E
I
------
I
E
K
V
E
ILPNNFS-END
S
I
Y
I
----SQENI
K
N
L
V
L
F
S----------K---------E------N
Q
T
V
L
E
L
L
I
T
--
P
------------
F
L
I
--
C
VNSG
L
---
K
--
Y
E
L
H
Y
-
Y
E
I
S
T
EISKND
T
E
I
I
G
-F-PF---------G--NKL
P
K
E
I
-TD-----NISP
K
L
F
V
R--RE
D
Y
S
A
F
E
N
----------------
F
L
S
Q
Y
F
N
A
M
K
SMGFAD
D
K
Q
A
I
-
G
M
I
E----H-G
A
T
L
F
Y
EVL----------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
81.67
22%
-33
- C3 -
4ACL
6
?
A:
[39-172]
---------------------------------------------------------------------------------------------------------------------
E
I
I
E
D
N
D
N
-
D
N
E
K
I
S
Y
----
H
R
N
N
I
R
K
S
I
F
F
L
----------
Q
---------
E
E
L
L
E
K
Y
S
E
T
V
C
K
Y
I
V
F
--
P
------------
L
L
A
--
Y
V
D
E
K
L
---
M
--
L
L
R
E
K
-
S
A
S
N
I
S
W
S
L
L
Q
L
E
Y
Y
D
-
R
-
K
D
---------
G
--
G
E
Y
V
F
E
I
-
T
D
N
I
L
SE
N
I
Y
P
Q
I
C
Y
Q
--
T
I
S
L
I
L
H
N
D
----------------
F
Y
G
K
Y
Y
D
N
I
Y
N
H
S
F
L
A
Y
K
K
E
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
80.99
21%
-63
- C3 -
4R33
5
?
A:
[35-418]
G
D
F
V
L
P
E
L
E
D
V
R
A
E
A
A
T
VD
T
R
A
V
L
A
LAEGEEPAES
R
A
A
V
A
L
A
L
W
E
DRSIG
T
A
E
L
Q
A
A
A
E
A
R
C
GARRPR
L
H
T
F
V
P
L
YTTNYCDSECKMCSMRKGNHRLD
R
K
F
S
G
R
K
E
I
------
T
E
Q
L
E
I
L
Y
H
H
----------------
E
G
V
R
G
V
G
F
L
T
----------
G
---------
E
------
Y
E
D
K
H
T
R
L
A
S
--
A
------------
F
R
I
G
W
A
I
R
T
A
L
---
D
L
G
F
E
R
V
Y
-
F
N
I
G
S
-
M
E
Q
D
E
I
D
V
L
G
-
E
-
W
I
---------
G
--
R
E
-------
D
-----
P
V
T
M
C
V
F
Q
E
--
S
Y
D
R
E
T
Y
R
R
----------------
F
M
G
K
-----
T
S
V
G
V
P
K
A
D
------
F
D
----
R
-
R
V
V
S
F
D
R
W
L
D
A
GY
R
Y
V
N
P
G
V
LVGLHDD
L
S
A
E
L
V
S
L
V
A
H
G
D
H
L
R
S
R
G
A
T
A
D
L
S
VPRMRPAMKS
R
D
T
T
R
V
G
D
D
D
Y
L
R
L
M
S
V
V
A
F
T
C
PE
Q
R
L
V
L
T
TREP
Q
E
F
Q
D
V
A
LGLAG
V
I
S
P
G
S
PDVAPYRAGCEARNDEKSSQFLVADLRR
P
R
H
I
L
G
R
I
E
A
S
G
T
P
V
D
HFVNPAGEASR
10
PsiBlast_CBE
66.49
33%
-51
- C3 -
2B4G
3
PYRD_TRYB2
C:
[107-171]
---------------------------------------------------------------------------------------------------------------------------------
S
V
E
E
----
S
V
E
M
V
K
K
L
V
P
I
T
----------
K
---------
E
------
K
G
T
I
L
E
L
N
L
S
--------------------
C
P
N
V
P
G
---
K
--
P
Q
V
G
Y
D
F
D
T
T
R
T
Y
L
Q
K
V
S
E
A
Y
G
-
L
-
P
F
---------
G
--
V
K
M
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_CBE
65.96
33%
-54
- C3 -
2B4G
4
PYRD_TRYB2
D:
[107-171]
---------------------------------------------------------------------------------------------------------------------------------
S
V
E
E
----
S
V
E
M
V
K
K
L
V
P
I
T
----------
K
---------
E
------
K
G
T
I
L
E
L
N
L
S
--------------------
C
P
N
V
P
G
---
K
--
P
Q
V
G
Y
D
F
D
T
T
R
T
Y
L
Q
K
V
S
E
A
Y
G
-
L
-
P
F
---------
G
--
V
K
M
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
65.72
33%
-50
- C3 -
2B4G
5
PYRD_TRYB2
A:
[107-171]
---------------------------------------------------------------------------------------------------------------------------------
S
V
E
E
----
S
V
E
M
V
K
K
L
V
P
I
T
----------
K
---------
E
------
K
G
T
I
L
E
L
N
L
S
--------------------
C
P
N
V
P
G
---
K
--
P
Q
V
G
Y
D
F
D
T
T
R
T
Y
L
Q
K
V
S
E
A
Y
G
-
L
-
P
F
---------
G
--
V
K
M
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_CBE
65.45
33%
-46
- C3 -
2B4G
3
PYRD_TRYB2
B:
[107-171]
---------------------------------------------------------------------------------------------------------------------------------
S
V
E
E
----
S
V
E
M
V
K
K
L
V
P
I
T
----------
K
---------
E
------
K
G
T
I
L
E
L
N
L
S
--------------------
C
P
N
V
P
G
---
K
--
P
Q
V
G
Y
D
F
D
T
T
R
T
Y
L
Q
K
V
S
E
A
Y
G
-
L
-
P
F
---------
G
--
V
K
M
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
61.96
18%
-38
- C3 -
4TYZ
1
?
A:
[1-109]
-----------------------------------------------------------------------------------------------------
N
I
E
G
V
F
------
R
K
S
F
P
D
L
A
G
E
--------------
T
L
L
D
S
F
N
C
A
W
V
E
----------
G
---------
S
------
A
L
K
Q
G
Y
L
F
I
T
--
P
------------
H
W
L
--
C
F
Q
S
T
L
AA
A
H
--
F
S
I
E
Y
-
D
E
I
K
D
I
I
K
S
K
S
V
K
M
-------------------
F
E
N
A
I
E
V
-
K
T
-----
H
L
N
D
T
I
F
L
T
NF
L
Q
R
D
Q
A
Y
S
A
----------------
L
M
S
Q
W
L
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
58.65
12%
-34
- C3 -
3TL4
-
SYQ_YEAST
X:
[2-187]
-----------------------------------------------------------------------------------------------------
S
S
V
E
E
L
------
T
Q
L
F
S
Q
V
G
F
E
D
K
-
K
V
K
E
I
V
K
----
N
K
K
V
S
D
S
L
Y
K
L
I
KETPSDYQWN
K
---------
S
------
T
R
A
L
V
H
N
L
A
S
--
F
VKGTDLPKSELI
V
N
G
--
I
I
N
G
D
L
---
K
--
T
S
L
Q
V
-
D
A
A
F
K
Y
V
K
A
N
G
E
A
S
T
K
M
G
M
N
E
NSGVGIEIT
E
--
D
Q
V
R
N
Y
V
M
Q
Y
-----
I
Q
E
N
K
E
R
I
L
--
T
E
R
Y
K
L
V
P
G
----------------
I
F
A
D
V
K
N
L
-
K
E
L
K
W
A
D
P
R
S
F
K
-
P
I
I
D
----
Q
-
E
V
L
K
L
L
G
P
K
DERDLI----------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
57.82
13%
-48
- C2 -
3HHC
9
IFNL3_HUMAN
A:
[34-196]
------------------------------------------------------------------------------------------------------
A
R
G
C
H
------
I
A
Q
F
K
S
L
--
S
P
Q
-
E
L
Q
A
F
K
R
----
A
K
D
A
L
E
E
S
L
L
L
K
----------
D
C
K
C
RSRLFP
R
------
T
W
D
L
R
Q
L
Q
V
R
--
E
------------
R
P
V
--
A
L
E
A
E
L
---
A
--
L
T
L
K
V
-
L
E
A
T
A
D
T
D
P
A
L
G
D
V
L
D
-
Q
-
P
L
---------
H
T
L
H
H
I
L
S
Q
L
-
R
A
-----
C
I
Q
----------------
G
----------------
R
L
H
H
W
L
H
R
L
Q
E
---
A
P
K
K
E
S
P
-
G
C
L
E
----
A
-
S
V
T
F
N
L
F
R
L
LT
R
D
L
N
C
V
A
S
GDLCV-------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
57.33
25%
-33
- C3 -
1F8R
1
OXLA_CALRH
A:
[99-176]
--------------------------------------------------------------------------------------------------------
R
E
Y
------
I
R
K
F
D
L
R
L
N
E
F
S
Q
E
N
D
N
A
W
Y
----
F
I
K
N
I
R
K
K
V
G
E
V
----------
K
---------
K
------
D
P
G
L
L
K
Y
P
V
K
--
P
------------
S
E
A
--
G
K
S
A
G
Q
---
L
--
Y
E
E
S
L
-
G
K
V
V
E
E
L
K
R
T
N
C
S
Y
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
56.22
25%
-36
- C3 -
1F8S
2
OXLA_CALRH
A:
[99-176]
--------------------------------------------------------------------------------------------------------
R
E
Y
------
I
R
K
F
D
L
R
L
N
E
F
S
Q
E
N
D
N
A
W
Y
----
F
I
K
N
I
R
K
K
V
G
E
V
----------
K
---------
K
------
D
P
G
L
L
K
Y
P
V
K
--
P
------------
S
E
A
--
G
K
S
A
G
Q
---
L
--
Y
E
E
S
L
-
G
K
V
V
E
E
L
K
R
T
N
C
S
Y
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
56.13
25%
-31
- C3 -
2IID
2
OXLA_CALRH
A:
[99-176]
--------------------------------------------------------------------------------------------------------
R
E
Y
------
I
R
K
F
D
L
R
L
N
E
F
S
Q
E
N
D
N
A
W
Y
----
F
I
K
N
I
R
K
K
V
G
E
V
----------
K
---------
K
------
D
P
G
L
L
K
Y
P
V
K
--
P
------------
S
E
A
--
G
K
S
A
G
Q
---
L
--
Y
E
E
S
L
-
G
K
V
V
E
E
L
K
R
T
N
C
S
Y
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
51.97
14%
-40
- C1 -
1IEZ
-
RIBB_ECOLI
A:
[1-217]
-----------------------------------------------------------------------------------------------------
M
N
Q
T
L
L
SSFGTP
F
E
R
V
E
N
A
L
A
A
L
R
-
E
G
R
G
V
M
V
L
D
D
E
D
R
E
N
E
G
D
M
I
F
P
A
----------
E
T--------
M
------
T
V
E
Q
M
A
L
T
I
R
HG
S
------------
G
I
V
--
C
L
C
I
T
E
---
D
--
R
R
K
Q
L
-
D
L
P
M
M
V
E
N
N
T
S
A
Y
G
T
G
-
F
-
T
V
---------
T
--
I
E
A
A
E
G
V
-
T
T
-----
G
V
S
A
A
--
D
R
--
I
T
T
V
R
A
A
I
A
DGAKPSD
L
N
R
PGH
V
F
P
L
R
A
Q
A
G
G
V
L
T
R
G
G
H
--
T
E
A
T
I
-
D
L
M
T
L
A
GF
K
-
P
A
G
V
L
C
E
L
T
NDDGTMARA
P
E
C
I
E
F
A
N
K
H
N
M
A
L
V
T
IE
D
L
V
A
Y
R
Q
A
H
E
RKAS-----------------------------------------------------------------------------------------------------------------------
27
HHSearch
47.21
17%
-42
- C3 -
2CWB
-
A:
[66-89]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
Q
P
Q
L
Q
Q
L
R
D
M
G
I
Q
D
D
E
L
S
L
-
R
A
L
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
45.79
17%
-44
- C3 -
1WR1
-
DSK2_YEAST
B:
[332-355]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
H
Q
L
R
Q
L
N
D
M
G
F
F
D
F
D
R
N
V
-
A
A
L
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
45.17
22%
-71
- C3 -
1Q02
-
A:
[6-39]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
P
----------------
R
L
I
E
S
L
S
Q
M
L
S
M
G
F
S
D
E
G
G
W
L
T
R
L
L
Q
----
T
K
N
Y
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
42.66
17%
-27
- C3 -
2DNA
-
A:
[20-43]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
E
M
E
C
L
Q
A
M
G
F
V
N
Y
N
A
N
L
-
Q
A
L
I
----
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
41.96
23%
-19
- C3 -
2KNZ
-
A:
[12-33]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
Q
L
E
Q
L
N
S
M
G
F
I
N
R
E
A
N
L
-
Q
A
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
41.20
25%
-33
- C3 -
2PXG
-
?
A:
[17-52]
-----------------------------------------------------------------------------------------------------------------------------------
L
I
----
K
Q
N
A
V
E
Q
L
Q
V
-
G
----------
Q
---------
S
------
K
Q
Q
V
S
A
L
L
G
T
--
P
------------
S
I
P
--
D
P
F
H
A
Q
---
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
40.72
21%
-13
- C3 -
1VEJ
-
?
A:
[30-53]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
E
L
E
E
L
K
A
L
G
F
A
N
R
D
A
N
L
-
Q
A
L
V
----
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------