@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0217: (2016-03-13 )
MKKAKSKVARIENRYIKDTATMKKTRSRRRIALFRRLAFMAIIFAVVGGLLTITYTKQVLTLKEKKEKQVQVDKKMVAMKDEQDSLNEQIKKLHNDDYIAKLARSEYYLSKDGEIIFNIPEENSKQKE
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........-10....-....20..--......--30........--------40----.---------...--....50-----.-.-.......60..-..-----....70.-.----......80........90........----.-----100.......110-----------------------..---....--.120......-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MK
K
A
K
S
K
V
A
-
R
I
E
N
R
Y-IK
D
T
A
T
M
K
--
K
T
RS
R
R
--
R
I
A
L
F
R
R
L
A
F
--------
M
A
----
I
---------
I
F
A
--
V
V
GG
L
------
L
-
T
-
I
T
Y
T
K
Q
V
L
T
L
K
-
E
K
-----
K
E
K
Q
V
Q
V
-
D
----
K
K
M
V
AMKD
E
Q
D
S
L
N
E
Q
I
-
K
K
LHN
D
D
Y
----
I
-----
A
K
L
A
RS
E
Y
Y
LSKD-----------------------
G
E
---
I
I
F
N--IPEENSKQKE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
75.80
17%
-3
* C3 *
2IAF
1
?
A:
[7-151]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
H
T
V
G
P
M
L
A
A
N
A
F
-
L
Q
L
L
E
Q
K
N
LF
D
K
T
Q
R
V
--
K
V
E
L
Y
G
S
L
A
L
T
GKGHG
T
D
K
A
----
I
---------
L
N
G
--
L
E
N
K
A
PES
M
I
P
R
M
H
-
E
I
L
D
S
N
L
L
N
L
A
-
G
K
-----
K
E
I
P
F
H
E
-
A
----
T
D
F
L
F
L
Q
K
E
L
L
P
K
H
S
N
G
M
R
F
S
A
F
D
G
N
----
A
-----
N
L
L
I
E
Q
V
Y
Y
S
I
G
G
-----------------------
G
------
F
I
--
T
T
E
E
D
F
D
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
72.65
18%
-68
- C3 -
3RC3
4
SUV3_HUMAN
A:
[13-644]
IPNTSLFV
P
L
T
V
K
P
QPLD
K
N
E
V
K
K
V
L
D
K
F
Y
K
R
K
E
I
Q
K
L
G
A
D
Y
GLD
A
R
L
F
H
Q
A
F
I
S
F
R
N
Y
I
M
Q
SHSLD
V
D
I
H
I
V
L
N
D
I
C
F
GAAHADDL
F
P
F
F
L
R
H
A
K
Q
I
F
PVLDC
K
D
D
L
R
K
I
S
DLRI
P
P
N
W
Y
P
D
A
R
A
M
Q
R
K
I
I
F
HSGPTNSG
K
T
Y
H
A
I
Q
K
Y
F
S
AK
S
G
V
Y
C
G
PL
K
L
L
A
H
E
I
F
E
K
S
N
A
A
G
V
P
C
D
L
V
T
GEERVTVQPNGKQAS
H
V
S
C
TVEMC
S
V
T
T
P
Y
E
V
A
-
V
I
D
E
I
Q
M
I
R
D
P
A
------------------
R
G
W
A
W
--------
T
R
----
A
---------
L
L
G
--
L
C
A
E
E
------
V
-
H
-
L
C
G
E
P
A
A
I
D
L
V
M
E
L
M
Y
T
T
G
E
E
V
E
V
R
D
-
Y
----
K
R
L
T
P
I
S
V
L
D
H
A
L
E
-
S
L
-
D
N
L
R
P
G
D
C
----
I
V
C
FS
K
N
D
I
Y
S
V
S
R
Q
I
E
I
R
-----------------------
G
L
E
S
A
V
I
Y
G
SL
P
P
G
T
K
L
A
Q
A
K
K
F
N
DPNDPCK
I
L
V
A
T
DAIGMGLNLSIR
R
I
I
FYSLIKEPIT
T
S
Q
A
L
Q
I
A
G
RAGRFSSRFK
E
G
E
V
T
T
MNHED
L
S
L
L
K
E
I
L
K
RPVDPIR
A
A
G
L
H
P
T
A
E
Q
I
E
M
F
A
Y
H
L
PDAT
L
S
N
L
I
D
I
F
V
D
F
S
Q
V
D
GQ
Y
F
V
C
N
M
D
D
F
K
F
S
A
E
L
I
QH
I
P
L
S
L
R
V
R
Y
V
F
C
T
APINKKQ
P
F
V
C
S
S
L
L
Q
F
A
R
Q
Y
S
R
NEPLT
F
A
W
L
R
R
Y
I
KWPLLPPKN
I
K
D
L
M
D
L
E
A
V
H
D
V
L
D
L
Y
L
W
L
S
Y
R
F
MDMFPD
A
S
L
I
R
D
L
Q
K
E
L
D
G
I
I
Q
D
G
V
H
N
I
T
K
L
I
K
M
S
E
THKLLNLE
10
PsiBlast_PDB
70.11
28%
-38
- C4 -
2ZQM
6
?
A:
[37-103]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
A
K
K
--
A
L
D
E
I
E
S
L
P
D
--------
D
A
----
V
---------
V
Y
K
--
T
V
G
T
L
------
I
-
V
K
T
T
K
D
K
A
V
A
E
L
K
-
E
K
-----
I
E
T
---
L
-
E
----
V
R
L
N
A
L
E
R
Q
E
K
K
L
N
E
K
L
-
K
E
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
65.86
30%
41
- C4 -
2O8B
1
B:
[141-253]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
A
-
R
V
E
Q
----
T
E
T
P
E
M
M
--
E
A
R
C
R
K
MA
H
I
S
K
Y
D
R
V
V
R
--------
R
E
----
I
C
R
I
I
T
KGTQ
T
Y
S
--
V
L
E
G
D
------
P
-
S
-
E
N
Y
S
K
Y
L
L
S
L
K
-
E
K
-----
E
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
65.44
30%
48
- C4 -
2O8E
1
B:
[141-248]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
A
-
R
V
E
Q
----
T
E
T
P
E
M
M
--
E
A
R
C
R
K
MA
H
I
S
K
Y
D
R
V
V
R
--------
R
E
----
I
C
R
I
I
T
KGTQ
T
Y
S
--
V
L
E
G
D
------
P
-
S
-
E
N
Y
S
K
Y
L
L
S
L
K
-
E
K
-----
E
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
65.05
30%
39
- C4 -
2O8C
1
B:
[141-251]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
A
-
R
V
E
Q
----
T
E
T
P
E
M
M
--
E
A
R
C
R
K
MA
H
I
S
K
Y
D
R
V
V
R
--------
R
E
----
I
C
R
I
I
T
KGTQ
T
Y
S
--
V
L
E
G
D
------
P
-
S
-
E
N
Y
S
K
Y
L
L
S
L
K
-
E
K
-----
E
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
64.67
30%
46
- C4 -
2O8D
1
B:
[141-251]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
A
-
R
V
E
Q
----
T
E
T
P
E
M
M
--
E
A
R
C
R
K
MA
H
I
S
K
Y
D
R
V
V
R
--------
R
E
----
I
C
R
I
I
T
KGTQ
T
Y
S
--
V
L
E
G
D
------
P
-
S
-
E
N
Y
S
K
Y
L
L
S
L
K
-
E
K
-----
E
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
64.49
41%
-13
- C4 -
1EU8
1
MALE_THELN
A:
[6-51]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
---------
V
F
A
--
V
G
G
A
P
------
N
-
E
-
I
E
Y
W
K
G
V
I
A
E
F
-
E
K
-----
K
Y
P
G
V
T
V
-
E
----
L
K
R
Q
A
T
D
T
E
Q
R
R
L
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
64.02
30%
33
- C4 -
2O8F
1
B:
[141-250]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
A
-
R
V
E
Q
----
T
E
T
P
E
M
M
--
E
A
R
C
R
K
MA
H
I
S
K
Y
D
R
V
V
R
--------
R
E
----
I
C
R
I
I
T
KGTQ
T
Y
S
--
V
L
E
G
D
------
P
-
S
-
E
N
Y
S
K
Y
L
L
S
L
K
-
E
K
-----
E
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
61.26
24%
-74
- C2 -
1GH9
-
PA84_METTH
A:
[1-71]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
----
I
---------
I
F
R
--
C
D
C
G
R
------
A
-
L
-
Y
S
R
E
G
A
K
-
T
R
K
-
C
V
-----
C
G
R
T
V
N
V
K
D
----
R
R
I
F
G
R
A
D
D
F
E
E
A
S
E
L
V
-
R
K
L
Q
E
E
K
Y
GSCH
F
-----
T
N
P
S
K
R
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
60.69
18%
15
- C4 -
1GK6
-
GCN4_YEAST (first)
A:
[355-409]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
-
Q
L
-----
E
D
K
V
E
E
L
-
L
----
S
K
N
Y
H
L
E
N
E
V
A
R
L
K
K
L
V
-
G
D
L
L
N
V
K
M
----
A
-----
L
D
I
E
I
A
T
Y
R
K
L
L
E
-----------------------
G
E
---
E
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
60.51
16%
-26
- C3 -
2AXP
-
YORR_BACSU
A:
[2-173]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
L
I
I
L
E
G
P
D
CC
F
K
S
T
V
A
A
K
L
-
S
K
E
L
K
Y
-
P
I
I
K
G
S
S
F
--
E
L
A
K
S
G
--
N
E
K
L
F
E
H
F
N
K
--------
L
A
D
EDN
V
---------
I
I
D
RF
V
Y
S
N
L
------
V
-
Y
-
A
K
K
F
K
D
Y
S
I
L
T
-
E
R
-----
Q
L
R
F
I
E
D
-
K
I
K
AK
A
K
V
V
Y
L
H
A
D
P
S
V
I
K
K
R
L
-
R
V
R
G
D
E
Y
I
----
E
-----
G
K
D
I
D
S
I
L
E
L
Y
R
E
V
M
S
N
AG
L
H
T
Y
S
W
DTGQWS
S
D
E
I
A
K
D
---
I
I
F
L
--
V
E
L
E
H
H
H
H
H
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
56.99
26%
7
- C4 -
3B73
1
?
A:
[43-87]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
S
V
S
R
R
L
-
K
K
L
A
D
H
D
L
----
L
-----
Q
P
L
A
N
G
V
Y
V
I
T
E
E
-----------------------
G
E
---
A
Y
L
N
--
G
E
Y
D
A
G
K
E
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
56.56
22%
57
- C4 -
1KD8
1
?
B:
[1-27]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
K
Q
L
-
K
----
A
K
V
E
E
L
K
S
K
L
W
H
L
K
N
K
V
-
A
R
L
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
56.28
17%
87
- C4 -
1NLW
-
MAD1_HUMAN
A:
[50-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
K
L
-----
E
D
S
D
R
K
A
-
V
----
H
Q
I
D
Q
L
Q
R
E
Q
R
H
L
K
R
Q
L
-
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
54.26
12%
72
- C4 -
2WPQ
-
?
A:
[2-26]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Q
I
-
E
----
D
K
I
E
E
I
L
S
K
I
Y
H
I
E
N
E
I
-
A
R
I
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
53.50
16%
60
- C4 -
3HE5
-
?
B:
[4-35]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
Y
L
-----
R
K
K
I
A
R
L
-
K
----
K
D
N
L
Q
L
E
R
D
E
Q
N
L
E
K
I
I
-
A
N
L
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
52.97
17%
88
- C4 -
3TQ2
1
?
A:
[4-36]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
S
-
A
L
-----
K
E
K
V
S
A
L
-
K
----
E
Q
F
L
M
L
M
F
K
V
S
A
L
K
E
K
V
-
S
A
L
K
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
51.20
25%
65
- C4 -
1TXP
-
HNRPC_HUMAN
B:
[180-207]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Q
A
I
-
K
----
K
E
L
T
Q
I
K
Q
K
V
D
S
L
L
E
N
L
-
E
K
I
E
K
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
50.58
19%
108
- C4 -
1T6F
-
GEMI_HUMAN
A:
[9-34]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
-
K
L
-----
H
K
E
I
E
Q
K
-
D
----
N
E
I
A
R
L
K
K
E
N
K
E
L
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------