@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo1748: (2016-03-28 )
MIENELEHAKKTEKIEFGVNRRLIFSSCLLWMAVGLLLYVVFSHIKGVNGIEEMILLVFIGLCVLRPLFRLINIAPTVELTERGVAYRGDFKSWNEIKKTELKKPAMMLFSQGRLIIMTSINGREEVAWDIVAADVSISLEELEKLIQSMRSTYTDDETIGMEIFVEKK
Atome Classification :
(20 SA)
-------------------------------------.........10........20........30-.........40........50....-----....60..--------......70.--.......80...------..--------.------.---.-90...----.....100....-------....110..-----......120...-....130......--.140-.......150.......160.......------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------MI
E
N
E
L
E
H
A
KKT
E
K
I
EFGVN
R
R
L
I
F
S
S
C
L
L
--
W
M
A
V
G
L
L
L
Y
V
V
F
S
H
IKGVN
G
I
E
E
M
I
-----
L
L
V
F
I
G
L
C
--------
V
L
R
P
L
F
R
L
I--NIAPT
V
E
LTERG------
V
A
--------Y------R---G-DF
K
S
W
----
N
E
I
K
K
T
E
-LK
K
P
-------
A
M
M
L
FS-QG-----
R
L
I
I
M
TSINGRE-
E
V
A
W
D
I
V
AADVSI--
S
L
E
E
-
L
E
K
L
I
Q
S
M
R
S
TYTDDE
T
I
G
M
E
I
F
V
EKK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
82.78
22%
-138
* C3 *
4Q7O
8
?
A:
[4-136]
-------------------------------------
M
K
N
N
I
F
----------
L
N
L
N
K
K
S
I
N
N
N
---------
H
F
V
I
S
I
F
F
E
T
I
Y
Q
F
E
T
-
K
D
T
L
-----
L
E
C
F
K
N
----------------------
I
T
T
T
G
H
F
G
V
I
G
------
A
Q
--------
Y
------
E
---
K
I
D
A
T
R
W
IGDY
E
E
V
N
G
F
E
Y
I
D
K
A
-------
P
S
I
Y
F
S
-
V
G
DDFNP
E
E
L
I
I
P
I
N
L
A
Y
H
---
Y
F
N
I
A
I
S
D
F
L
I
--
A
H
P
E
-
Y
Q
K
K
C
K
E
I
Q
K
T
Y
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
73.43
16%
-72
- C1 -
1XIP
-
NU159_YEAST
A:
[1-381]
A
S
S
L
K
D
E
V
P
T
E
TSED
F
G
F
K
FLGQKQILPSFNEKLPFA
S
L
Q
N
-
L
D
I
S
N
S
K
S
L
F
V
A
A
S
G
S
K
A
V
V
G
E
-
L
Q
--
L
L
R
D
H
I
T
S
D
S
T
P
L
T
F
K
W
E
K
E
I
P
D
V
I
-----
F
V
C
F
H
G
------------------------
D
Q
V
L
V
S
T
R
N
------
A
L
--------
Y
------
S
---
L
-
D
L
E
E
L
----
S
E
F
R
T
V
T
S
F
E
K
P
-------
V
F
Q
L
K
N
V
N
N
-----
T
L
V
I
L
N
S
V
N
D
L
S
-
A
L
D
L
R
------
T
K
--
S
T
K
Q
-
L
A
Q
N
V
T
S
F
D
V
T
N
S
-----
Q
L
A
V
L
L
K
D
R
S
F
Q
S
F
AWRNGEMEKQ
F
E
F
S
L
P
SELEELPVEEYSPL
S
V
T
I
LSPQ
D
F
L
A
V
F
G
N
V
I
S
ETDD
E
V
S
Y
D
Q
K
M
Y
I
I
K
H
I
DG
S
A
S
F
Q
E
T
FDITPPFGQIVRF
P
Y
M
Y
K
V
T
L
S
GLIEPD
A
N
V
N
V
L
A
S
SCSS
E
V
S
I
W
DSK
Q
V
I
E
P
SQDSE
R
A
V
L
P
I
S
EETD
K
D
T
N
P
I
G
V
A
V
D
VVTSGL
P
L
V
Y
I
L
N
NEG
S
L
Q
I
V
G
L
F
H
7
PsiBlast_PDB
68.18
26%
-20
- C4 -
4DYE
2
?
A:
[249-354]
-------------------------------------------------------------------------------------
G
I
E
G
M
A
Q
V
K
-----
A
K
V
R
I
P
L
C
--------
T
N
M
C
V
V
R
F
E
--
D
F
A
P
A
M
R
L
N
A
V
D
------
V
I
--------
H
----------
G
-
D
V
Y
K
W
----
G
G
I
A
A
T
K
-
A
L
A
A
H
C
E
T
F
G
L
G
M
N
L
H
S
-
G
G
-----
E
L
G
I
A
T
--------------
A
A
H
L
A
V
V
S
S
T
P
V
-
L
S
R
A
I
D
S
M
Y
Y
L
H
A
D
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
67.89
26%
0
- C- -
4MRR
-
ATM1_NOVAD
A:
[490--43]
------------------------------------------------------------------------------------------------------------------------------------
E
V
G
E
R
G
------
L
K
--------
L
------
S
---
G
-
G
E
K
Q
R
----
V
A
I
A
R
T
L
-
V
K
N
P
-------
P
I
L
L
F
D
-
E
A
---------
T
S
A
L
D
T
R
T
-
E
--
Q
D
I
L
S
T
M
R
A
V
--
A
S
H
R
-
T
T
I
S
I
A
H
R
L
S
T
I
A
D
S
D
T
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
62.35
26%
14
- C4 -
4MRS
-
ATM1_NOVAD
A:
[490-565]
------------------------------------------------------------------------------------------------------------------------------------
E
V
G
E
R
G
------
L
K
--------
L
------
S
---
G
-
G
E
K
Q
R
----
V
A
I
A
R
T
L
-
V
K
N
P
-------
P
I
L
L
F
D
-
E
A
---------
T
S
A
L
D
T
R
T
-
E
--
Q
D
I
L
S
T
M
R
A
V
--
A
S
H
R
-
T
T
I
S
I
A
H
R
L
S
T
I
A
D
S
D
T
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
61.96
26%
11
- C4 -
4MRV
-
ATM1_NOVAD
A:
[490-565]
------------------------------------------------------------------------------------------------------------------------------------
E
V
G
E
R
G
------
L
K
--------
L
------
S
---
G
-
G
E
K
Q
R
----
V
A
I
A
R
T
L
-
V
K
N
P
-------
P
I
L
L
F
D
-
E
A
---------
T
S
A
L
D
T
R
T
-
E
--
Q
D
I
L
S
T
M
R
A
V
--
A
S
H
R
-
T
T
I
S
I
A
H
R
L
S
T
I
A
D
S
D
T
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
61.72
26%
20
- C4 -
4MRN
-
ATM1_NOVAD
A:
[490-565]
------------------------------------------------------------------------------------------------------------------------------------
E
V
G
E
R
G
------
L
K
--------
L
------
S
---
G
-
G
E
K
Q
R
----
V
A
I
A
R
T
L
-
V
K
N
P
-------
P
I
L
L
F
D
-
E
A
---------
T
S
A
L
D
T
R
T
-
E
--
Q
D
I
L
S
T
M
R
A
V
--
A
S
H
R
-
T
T
I
S
I
A
H
R
L
S
T
I
A
D
S
D
T
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
61.59
26%
12
- C4 -
4MRP
-
ATM1_NOVAD
A:
[490-565]
------------------------------------------------------------------------------------------------------------------------------------
E
V
G
E
R
G
------
L
K
--------
L
------
S
---
G
-
G
E
K
Q
R
----
V
A
I
A
R
T
L
-
V
K
N
P
-------
P
I
L
L
F
D
-
E
A
---------
T
S
A
L
D
T
R
T
-
E
--
Q
D
I
L
S
T
M
R
A
V
--
A
S
H
R
-
T
T
I
S
I
A
H
R
L
S
T
I
A
D
S
D
T
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
57.74
14%
-54
- C3 -
3ZUA
-
HLYB3_ECOLX
A:
[-4-137]
--------------------------------------------
N
S
D
S
C
H
K
I
D
Y
G
L
Y
A
L
E
I
L
A
Q
Y
---------------
H
N
V
S
V
N
P
E
E
I
K
H
R
F
-----
D
T
D
G
T
G
L
------------
G
L
T
S
W
L
--
L
A
A
K
S
L
E
L
K
V
K
Q
------
V
K
--------
K
---------------------
T
I
D
R
L
N
F
-
I
S
L
P
-------
A
L
V
W
R
E
-
D
G
-----
R
H
F
I
L
T
K
V
S
K
E
A
-
N
R
Y
L
I
F
D
L
E
Q
R
N
P
--
R
V
L
E
-
Q
S
E
F
E
A
L
Y
Q
G
H
I
I
L
I
A
S
R
S
S
V
A
G
K
L
A
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
55.09
10%
-74
- C3 -
1YVE
4
ILV5_SPIOL
I:
[12-236]
---------------------------ATTFDFDSSV
F
K
K
E
K
V
T
L
S
G
H
D
E
Y
I
V
R
G
G
R
N
L
F
P
L
L
P
D
A
F
KG
I
K
Q
I
G
V
I
G
W
G
S
Q
A
P
A
Q
A
Q
N
L
K
D
S
L
T
EAKSD
V
V
V
K
I
G
L
R
KGSNSFAE
A
R
A
A
G
F
S
E
E
NG
T
L
G
D
M
W
E
T
I
S
G
S
DLVLLL
I
S
--------
D
------
S
---
A
-
Q
A
D
N
Y
----
E
K
V
F
S
H
--
M
K
P
N
-------
S
I
L
G
L
S
-
H
G
-----
F
L
L
G
H
L
Q
S
L
G
Q
D
F
P
K
N
I
S
V
I
A
V
C
P
K
G
--
M
G
P
S
-
V
R
R
L
Y
V
Q
G
K
E
V
N
G
A
G
I
N
S
S
F
A
V
H
Q
D
V
D
GRATDVALGWSIALGSPFTFATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
52.38
30%
-31
- C4 -
3NOW
-
?
A:
[845-904]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
W
----
L
D
I
L
H
T
L
-
I
A
N
P
-------
S
P
A
V
Q
H
-
R
G
-----
I
V
I
I
L
N
M
I
N
A
G
E
-
E
I
A
K
K
L
F
E
T
D
I
M
E
--
L
L
S
G
-
L
G
Q
L
P
D
D
T
R
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
51.53
18%
40
- C2 -
2K3M
3
?
A:
[25-151]
---------------------------------------
M
S
D
F
D
T
E
R
V
S
R
A
V
A
A
A
L
V
G
-----------------------------
P
G
G
V
A
L
V
-----
V
K
V
C
A
G
L
-----------------------
P
G
V
I
H
T
P
---------
A
--------
R
------
R
---
G
-
F
F
R
C
N
----
P
E
--
R
I
Q
-
I
G
D
W
-------
R
Y
E
V
A
H
-
D
G
-----
R
L
L
A
A
H
M
V
N
G
I
V
-
I
A
E
D
A
L
I
A
E
A
V
G
P
--
H
L
A
R
A
L
G
Q
I
V
C
R
Y
G
A
T
V
I
P
N
I
N
A
A
I
E
V
L
G
T
G
T
DYRF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
50.53
50%
-28
- C4 -
1LVA
-
A:
[15-40]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
E
-
G
L
D
W
Q
E
A
A
T
R
A
S
L
--
S
L
E
E
-
T
R
K
L
L
Q
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
48.89
9%
-63
- C4 -
1H4R
1
MERL_HUMAN
A:
[231-313]
-------------------------------------------------------------------------------------------------------------------------------
T
E
L
L
L
G
V
D
A
L
G
------
L
H
I
Y
DPE---
N
------
R
LTP
K
-
I
S
F
P
W
----
N
E
I
R
N
I
S
-
Y
S
D
K
-------
E
F
T
------------
I
K
P
L
D
-
K
-
K
---
I
D
V
F
K
F
N
S
S
K
-
L
R
--
V
N
K
L
-
I
L
Q
L
C
I
G
N
H
D
L
F
M
R
R
R
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
43.96
15%
-41
- C4 -
1HYW
-
W_LAMBD
A:
[1-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
----
T
R
Q
E
E
L
A
-
A
A
R
A
-------
A
L
H
D
L
M
-
T
G
-----
K
R
V
A
T
V
Q
K
D
G
R
--
R
V
E
F
T
------
A
T
--
S
V
S
D
-
L
K
K
Y
I
A
E
L
E
V
Q
T
G
M
T
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
37.28
31%
52
- C4 -
1CXV
-
MMP13_MOUSE
A:
[17-49]
------------------------------------------------------------------------------------------------------------------------
Y
R
I
V
--
N
Y
T
P
D
M
S
H
S
E
V
E
------
K
A
--------
F
------
R
---
K
-
A
F
K
V
W
----
S
D
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
34.78
21%
127
* C4 *
2GL7
-
BCL9_HUMAN
C:
[6-28]
--------------------------------------
S
Q
E
Q
L
E
H
R
E
R
S
L
Q
T
L
R
D
I
Q
R
M
L
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
33.17
11%
84
- C5 -
1OU8
1
SSPB_HAEIN
A:
[60-94]
---------------------------------------------------------------------------------------------------------------------------------
G
N
L
Q
L
T
N
D
F
------
I
Q
F
N
A
R
F
KG
V
S
------
R
---
E
-
L
Y
I
P
M
----
G
A
A
L
A
I
Y
-
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
32.62
40%
63
- C4 -
3JVM
1
A:
[60-86]
--------------------------------------
I
K
S
K
L
E
S
R
E
Y
R
D
A
Q
E
F
G
A
D
V
R
L
M
F
S
N
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
32.58
18%
56
* C5 *
1MIX
-
TLN1_CHICK
A:
[327-361]
--------------------------------------------------------------------------------------------------------------------------------
P
R
L
L
G
I
T
K
E
C
------
V
M
R
-------
V
D
EKTKE
V
---
I
-
Q
E
W
S
L
----
T
N
I
K
R
W
A
-
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------