@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1670: (2015-12-09 )
MRCPKCGYNKSSVVDSRQAEEGTTIRRRRECEKCGNRFTTFERLEELPLLVIKKDGTREQFSRDKILNGIIQSAQKRPVSSEDIENCILRIERKIRSEYEDEVSSITIGNLVMDELAELDEITYVRFASVYKSFKDVDEIEELLQQITKRVRSKKSGSV
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10....--....20----.........30........40......------..50........60........70--........80......---..90........100.......110.......-120....-----------...130......---.--140.......150.......---------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRCPKCGYNKSSVVD--SRQAE-----EG
T
T
I
R
R
R
R
E
C
E
K
CGNRF
T
T
F
E
R
L
E
EL------
P
L
L
V
I
KKDG
T
R
E
Q
F
S
R
D
K
I
L
N
G
I
I
--
Q
S
A
QKRPV
S
S
E
D
I
E
N
C
---
I
L
R
I
E
R
K
I
R
S
E
Y
E
D
E
V
S
SI
T
I
G
N
L
V
M
D
E
L
A
E
L
-
D
E
I
T
Y
V
R
-----------
F
A
S
V
Y
K
S
FK
D
V
D
---
E
--
I
E
E
L
L
Q
Q
I
T
K
R
V
RSKKSGSV---------------------------
42
Fugue
81.33
23%
-38
- C6 -
4KYI
5
?
A:
[4-544]
G
S
E
I
S
K
T
EAG
Q
Y
S
V
S
A
P
E
H
K
G
L
V
L
S
G
G
GAKGISY
L
G
M
I
Q
A
L
Q
E
R
GKIKNLT
H
V
S
G
A
S
A
G
A
M
T
A
S
I
L
A
V
GMD
I
K
D
I
K
K
L
I
E
G
LDITKLLDNSGVGFRARG
D
R
F
R
N
I
L
D
V
I
Y
M
M
Q
M
K
K
H
L
E
S
VQQPIPPEQ
Q
M
N
Y
G
I
L
K
Q
K
I
A
L
Y
E
D
K
L
S
R
A
GIVINN
V
D
D
I
I
N
L
T
K
S
V
K
D
L
E
K
L
D
K
A
LNSIPT
E
L
K
G
A
KGEQLENPRLT
L
G
D
L
G
R
L
R
E
L
LPEENKHLIKN
L
S
V
V
V
T
NQTKH
E
L
E
R
Y
S
EDTTPQQS
I
A
Q
V
V
Q
W
S
G
AHPVLFV
P
G
R
N
AKG
E
Y
I
A
D
GGI
L
D
N
M
P
E
I
E
GLDREE
V
L
C
V
K
A
E
A
G
T
A
F
E
D
R
V
N
K
A
K
Q
S
A
M
E
A
I
S
W
F
K
A
R
M
D
S
L
VTSSV
L
N
R
E
K
V
Y
Y
N
I
D
N
M
I
Y
--
I
N
T
G
E
VTTTN
T
S
P
T
P
E
Q
R
A
R
A
V
K
N
G
Y
D
-
Q
T
M
Q
L
L
D
S
H
KQTFDH
P
L
M
A
I
L
Y
I
G
------
H
D
K
L
K
D
A
L
I
D-
E
K
S
E
K
E
I
F
E
A
S
A
H
A
Q
A
---
I
L
H
L
Q
E
Q
I
V
K
E
M
N
D
G
D
Y
S
-----
S
V
Q
N
Y
L
D
Q
I
-
E
D
I
L
T
V
D
AKMD
D
I
Q
K
E
K
A
F
A
L
C
I
K
Q
V
N
F
L
S
---
E
G
K
L
E
T
Y
L
N
K
V
E
A
E
A
K
A
A
A
E
P
S
W
A
T
K
I
L
N
L
L
W
AP
I
E
W
V
V
SLFKGPAQDFK
47
Fugue
72.38
17%
-22
- C4 -
4D5T
1
A49R_VACCW
A:
[2-152]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
G
Y
----
V
S
D
--
M
H
T
E
L
-----
A
S
I
S
Q
L
V
I
A
K
I
E
T
I
D
N
D
I
L
N
K
D
I
V
N
---------
F
I
M
C
R
S
N
L
D
N
P
F
I
S
F
L
D
T
V
Y
T
I
I
DQ
E
N
Y
Q
T
E
L
I
N
S
L
D
D
N
E
I
---
I
D
C
I
V
N
K
F
M
S
F
Y
K
D
N
L
E
N
I
V
D
A
I
I
T
L
K
Y
I
M
N
N
-
P
D
F
K
T
T
Y
-----------
A
E
V
L
G
S
R
I
A
D
I
D
I
K
Q
V
--
I
R
E
N
I
L
Q
L
S
N
D
I
R
E
R
Y
L
G
-----------------------------
8
PsiBlast_PDB
62.88
25%
-28
- C2 -
2HEK
5
?
A:
[97-202]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
L
P
R
E
R
S
H
E
D
F
T
E
R
V
I
K
E
T
E
I
--
Y
E
I
L
K
Q
D
Y
S
H
E
D
I
E
R
L
---
V
R
I
T
L
G
K
P
E
D
E
E
E
K
L
L
S
E
I
I
T
G
E
F
G
S
D
R
M
D
Y
L
-
R
R
D
A
Y
-------------
F
C
G
V
S
Y
G
F
F
D
Y
D
---
R
--
L
I
S
T
L
R
V
Y
E
N
K
V
V
V
D
E
S
G
L
R
---------------------------
13
HHSearch
62.40
25%
-98
- C5 -
2XAP
-
RIR1_ECOLI
A:
[4-66]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
L
V
T
K
R
D
G
S
T
E
R
I
N
L
D
K
I
H
R
V
L
D
--
W
A
A
E
G
L
H
N
--
V
S
I
S
Q
V
---
E
L
R
S
H
I
Q
F
Y
D
----
G
I
K
T
S
D
I
H
E
T
I
I
K
A
A
A
D
L
-
I
S
R
D
A
P
D
-----------
Y
Q
Y
L
A
A
R
L
A
I
F
H
---
L
--
R
K
K
A
Y
G
Q
F
E
P
P
A
L
Y
D
H
V
V
K
M
---------------------------
50
Fugue
57.40
15%
-16
* C4 *
1EO6
-
GBRL2_BOVIN
A:
[1-116]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
--
W
M
F
K
E
-----
D
H
S
L
E
H
R
C
V
E
S
A
K
I
R
A
K
Y
P
-----
D
R
V
------
P
V
I
V
E
K
V
S
G
S
Q
---------
I
V
D
I
--
D
K
R
K
Y
L
V
P
S
D
I
T
V
A
Q
F
---
M
W
I
I
R
K
R
I
Q
L
P
S
E
K
A
I
-
F
L
F
V
D
K
T
V
P
Q
---------
S
S
L
T
-----------
M
G
Q
L
Y
E
K
E
K
D
E
D
---
G
--
F
L
Y
V
A
Y
S
G
E
N
T
F
G
----------------------------------
11
HHSearch
57.37
23%
-105
* C5 *
3HNC
-
RIR1_HUMAN
A:
[14-66]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
F
D
K
I
T
S
R
I
Q
--
K
L
C
Y
G
L
N
M
D
F
V
D
P
A
Q
I
---
T
M
K
V
I
Q
G
L
Y
S
----
G
V
T
T
V
E
L
D
T
L
A
A
E
T
A
A
T
L
-
T
T
K
H
P
D
Y
-----------
A
I
L
A
A
R
I
A
V
S
N
L
---
H
--
K
E
T
K
K
V
F
S
D
V
M
E
D
L
Y
N
Y
I
N
P
---------------------------
45
Fugue
56.86
15%
-10
- C4 -
1EO6
-
GBRL2_BOVIN
A:
[1-116]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
--
W
M
F
K
E
-----
D
H
S
L
E
H
R
C
V
E
S
A
K
I
R
A
K
Y
P
-----
D
R
V
------
P
V
I
V
E
K
V
S
G
S
Q
I
V
---------
D
I
--
D
K
R
K
Y
L
V
P
S
D
I
T
V
A
Q
F
---
M
W
I
I
R
K
R
I
Q
L
P
S
E
K
A
I
F
L
F
V
D
K
T
V
P
Q
S
S
L
----------
T
-----------
M
G
Q
L
Y
E
K
E
K
D
E
D
---
G
--
F
------
L
Y
V
A
Y
S
G
E
N
T
F
G
----------------------------
2
PsiBlast_PDB
55.22
26%
13
- C5 -
1Z1W
-
TRF3_THEAC
A:
[314-385]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
R
T
S
G
A
L
R
S
D
S
L
K
N
T
H
P
I
E
V
D
V
R
D
P
D
E
I
S
Q
I
F
D
E
I
S
Y
G
K
-----------
G
A
S
I
L
R
M
I
E
D
Y
A
---
G
--
Y
E
E
F
R
K
G
I
S
K
Y
L
N
D
H
K
F
G
N
A
---------------------------
3
PsiBlast_PDB
53.53
26%
19
- C5 -
1Z5H
-
TRF3_THEAC
A:
[314-385]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
R
T
S
G
A
L
R
S
D
S
L
K
N
T
H
P
I
E
V
D
V
R
D
P
D
E
I
S
Q
I
F
D
E
I
S
Y
G
K
-----------
G
A
S
I
L
R
M
I
E
D
Y
A
---
G
--
Y
E
E
F
R
K
G
I
S
K
Y
L
N
D
H
K
F
G
N
A
---------------------------
1
PsiBlast_PDB
50.02
29%
-44
- C5 -
4O2I
-
?
A:
[35-85]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
--
D
I
G
K
R
I
P
L
S
A
E
D
L
G
N
L
Y
E
N
V
I
R
A
V
R
D
S
R
S
K
L
I
D
Q
H
T
V
D
M
I
G
N
T
I
L
D
A
L
S
R
S
-
Q
T
F
R
D
A
V
-----------
S
Y
G
I
H
N
K
E
V
H
I
G
---
C
--
I
K
Y
R
N
E
Y
E
L
N
G
E
S
P
V
K
V
D
D
I
---------------------------
4
PsiBlast_PDB
49.36
26%
23
- C5 -
3Q7J
1
TRF3_THEAC
A:
[314-385]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
R
T
S
G
A
L
R
S
D
S
L
K
N
T
H
P
I
E
V
D
V
R
D
P
D
E
I
S
Q
I
F
D
E
I
S
Y
G
K
-----------
G
A
S
I
L
R
M
I
E
D
Y
A
---
G
--
Y
E
E
F
R
K
G
I
S
K
Y
L
N
D
H
K
F
G
N
A
---------------------------
44
Fugue
46.84
10%
-7
* C6 *
1D9C
-
IFNG_BOVIN
A:
[1-121]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
Q
F
F
R
--
E
I
E
N
L
-----
K
E
Y
F
N
A
S
S
P
D
V
A
K
G
G
P
L
F
--
S
E
I
L
K
N
W
------------
K
D
E
S
D
K
K
I
I
Q
S
Q
I
V
S
F
Y
F
--
K
L
F
E
N
L
K
-
D
N
Q
V
I
Q
R
S
---
M
D
I
I
K
Q
D
M
F
Q
K
F
L
N
G
S
---------
S
E
K
L
E
D
F
-
K
K
L
I
Q
I
P
-----------
V
D
D
L
Q
I
Q
R
K
A
I
N
---
E
--
L
I
K
V
M
N
D
L
S
--------------------------------------
10
PsiBlast_PDB
44.97
27%
56
- C3 -
1MEY
4
?
C:
[34-76]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
C
P
E
C
G
K
S
F
S
Q
S
S
D
--
L
Q
K
H
Q
-----
R
T
H
T
G
E
K
P
Y
K
C
P
E
C
G
K
S
F
S
R
S
D
H
L
S
R
H
------
Q
R
T
H
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
42.63
24%
63
- C3 -
1TWF
1
RPB9_YEAST
I:
[74-113]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
C
P
K
C
H
S
R
E
N
V
F
F
Q
SQ
Q
R
R
K
D
-----
T
--
S
M
V
L
F
F
V
C
L
S
C
S
H
I
F
T
S
D
Q
K
N
K
R
T
------
Q
F
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
42.59
27%
34
- C3 -
2I13
6
ZSCA2_MOUSE
A:
[79-121]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
C
P
E
C
G
K
S
F
S
Q
R
A
N
--
L
R
A
H
Q
-----
R
T
H
T
G
E
K
P
Y
A
C
P
E
C
G
K
S
F
S
Q
L
A
H
L
R
A
H
------
Q
R
T
H
T
G
E
K
P
Y
K
C
P
E
C
G
K
S
F
S
R
E
D
N
--
L
H
T
H
Q
R
T
H
T
G
E
K
P
Y
K
C
---
P
E
C
G
K
S
F
S
R
R
D
A
L
N
V
H
Q
R
T
H
------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
40.19
48%
-56
* C7 *
3MTN
3
UBP21_HUMAN
A:
[194-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
C
Q
A
C
G
Y
R
S
T
T
F
E
V
F
C
D
L
------
S
L
P
I
P
K
K
G
F
A
G
G
K
V
S
L
R
D
C
F
N
L
F
T
--
K
E
E
E
L
E
S
E
N
A
P
V
C
D
R
C
---
R
Q
K
T
R
S
T
K
K
L
T
V
Q
R
F
P
R
I
L
V
L
H
L
N
R
F
S
A
R
G
S
I
-
K
K
S
S
V
G
V
-----------
D
F
P
L
Q
R
L
S
L
G
D
F
---
A
--
S
S
P
V
Y
Q
L
Y
A
L
C
N
H
S
G
S
V
H
Y
G
---------------------------
33
HHSearch
39.33
28%
56
- C3 -
1TWF
1
RPAB4_YEAST
L:
[30-54]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
C
A
E
C
S
S
K
-
L
S
L
S
R
-----------------
T
D
A
V
R
C
K
D
C
G
H
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
38.66
48%
-31
- C7 -
2Y5B
1
UBP21_HUMAN
A:
[188-212]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
C
Q
A
C
G
Y
R
S
T
T
F
E
V
F
C
D
L
------
S
L
P
I
P
K
K
K
V
S
L
R
D
C
F
N
L
F
T
K
E
E
E
L
--
E
S
E
N
A
P
V
C
D
R
C
R
Q
K
T
R
---
S
T
K
K
L
T
V
Q
R
F
P
R
I
L
V
L
H
L
N
R
F
S
A
S
R
G
S
I
K
K
S
S
-
V
G
V
D
F
P
L
-----------
Q
R
L
S
L
G
D
F
A
S
D
S
---
P
--
V
Y
Q
L
Y
A
L
C
N
H
S
G
S
V
H
Y
G
H
Y
T
---------------------------
31
HHSearch
38.02
38%
58
- C3 -
3CC2
-
RL37A_HALMA
Z:
[62-90]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
P
N
C
G
E
D
R
--
V
D
R
--
Q
----------
G
T
---
G
I
W
Q
C
S
Y
C
D
Y
K
F
T
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
37.96
45%
-22
- C1 -
4KIS
1
?
A:
[172-195]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Y
K
H
T
H
E
L
E
K
C
G
N
K
I
W
R
A
D
K
L
E
E
L
------
I
I
D
R
V
N
N
Y
S
F
A
S
R
N
I
D
K
E
D
E
S
L
N
E
--
K
L
K
I
E
H
A
K
K
K
R
L
F
D
L
Y
---
I
N
G
S
Y
E
V
S
E
L
D
S
M
M
N
D
I
D
A
Q
I
N
Y
Y
E
A
Q
I
E
A
N
E
-
E
L
K
K
N
K
T
-----------
V
D
F
N
S
L
E
F
R
E
K
Q
---
L
--
Y
L
K
S
L
I
N
K
I
Y
I
D
G
E
Q
V
T
I
E
W
---------------------------