@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu01810: (2016-06-03 )
MPDSINNGHKESHDHRISNDAEMITDEKWQAIINNDAAYNNQFFYAVKSTGIFCKPSCKSRVPKKENVCIFPNTEQALRANFRPCKRCKPTNEKMPDSEWVDLITEYIDKNFTEKLTLESLADICHGSPYHMHRTFKKIKGITLVEYIQQVRVHAAKKYLIQTNKAIGDIAICVGIANAPYFITLFKKKTGQTPARFRQMSKMEETYNGNK
Atome Classification :
(21 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40........50........60........70........80........90........100.......110-..-.-....120.......130.......140.......150.......160--.......170.......180.......190.......200.......210---
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPDSINNGHKESHDHRISN
D
A
E
M
I
T
D
E
K
W
Q
A
I
INNDAAYNN
Q
F
F
Y
A
V
KST
G
I
F
CKPSCKSRVPKKE
N
V
C
IFPN
T
E
Q
A
L
R
ANFRPCKRCKPTNEKMP
D
S
E
W
V
D
L
I
T
E
Y
I
DKNF-
T
E
-
K
-
L
T
L
E
S
L
A
D
I
CHGS
P
Y
H
M
H
R
T
F
K
K
IKG
I
T
L
V
E
Y
I
Q
Q
V
R
V
H
A
A
K
K
Y
L
I
Q--TNKAIG
D
I
A
I
C
V
GIANA
P
Y
F
I
T
L
F
KKKTGQT
P
A
R
F
R
Q
M
S
K
M
E
E
TYNGNK----
7
PsiBlast_PDB
85.26
34%
-119
- C1 -
3LSG
1
?
A:
[5-103]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
I
Q
N
I
I
E
E
S
Y
-
T
D
S
Q
-
F
T
L
S
V
L
S
E
K
L
D
L
S
S
G
Y
L
S
I
M
F
K
K
N
F
G
I
P
F
Q
D
Y
L
L
Q
K
R
M
E
K
A
K
L
L
L
L
T
--
T
E
L
K
N
Y
E
I
A
E
Q
V
G
F
E
D
V
N
Y
F
I
T
K
F
K
K
Y
Y
Q
I
T
P
K
Q
Y
R
E
----------------
26
Fugue
85.23
19%
-80
- C1 -
4FE7
1
XYLR_ECOLI
A:
[21-409]
MFT
K
R
H
R
I
T
L
L
F
N
ANK
A
Y
D
R
Q
V
V
E
G
V
G
E
Y
L
Q
A
S
QSEWDIFIEEFRWLGD
G
V
I
A
DFDD
K
Q
I
E
Q
A
L
ADVD
V
P
I
V
G
V
G
G
S
Y
HLAESYPP
V
H
Y
I
A
T
D
N
Y
A
L
V
E
S
A
F
L
H
L
K
E
K
GVN
R
F
A
F
Y
G
L
P
ESSGK
R
W
A
T
E
R
E
Y
A
F
R
Q
L
V
AEEK
Y
R
G
V
V
Y
Q
G
LETAPEN
W
Q
H
A
Q
N
R
L
A
D
W
L
Q
T
LPPQ
T
G
I
I
A
VT
D
A
R
A
R
H
I
L
Q
V
C
E
H
L
HIPVPEK
L
C
V
I
G
I
DNEELTRYLSRV
A
L
S
S
V
A
Q
G
A
R
Q
M
G
Y
Q
A
A
K
L
L
H
R
L
L
D
K
E
E
------------------
M
P
L
Q
R
I
L
V
P
P
V
R
V
I
E
R
--------------------------
R
S
T
D
Y
R
S
L
T
D
P
A
V
I
Q
A
M
H
Y
I
R
N
H
A
-
C
K
-
G
-
I
K
V
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
H
A
M
I
H
A
E
K
L
E
K
A
R
S
L
L
I
S
--
T
T
L
S
I
N
E
I
S
Q
M
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
D
V
N
S
E
------------
38
HHSearch
84.54
33%
-119
- C1 -
3LSG
1
?
A:
[3-102]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
E
L
I
Q
N
I
I
E
E
S
Y
T
D
S
-
Q
-
F
T
L
S
V
L
S
E
K
L
D
L
S
S
G
Y
L
S
I
M
F
K
K
N
F
G
I
P
F
Q
D
Y
L
L
Q
K
R
M
E
K
A
K
L
L
L
L
T
--
T
E
L
K
N
Y
E
I
A
E
Q
V
G
F
E
D
V
N
Y
F
I
T
K
F
K
K
Y
Y
Q
I
T
P
K
Q
Y
R
-----------------
30
HHSearch
82.45
24%
-114
- C1 -
4FE7
-
XYLR_ECOLI
A:
[303-408]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
P
A
V
I
Q
A
M
H
Y
I
R
N
H
A
-
C
K
-
G
-
I
K
V
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
H
A
M
I
H
A
E
K
L
E
K
A
R
S
L
L
I
S
--
T
T
L
S
I
N
E
I
S
Q
M
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
D
V
N
S
-------------
31
HHSearch
80.83
32%
-111
- C1 -
3OOU
1
?
A:
[4-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
I
I
Q
N
V
L
S
Y
I
T
E
H
F
-
S
E
-
G
-
M
S
L
K
T
L
G
N
D
F
H
I
N
A
V
Y
L
G
Q
L
F
Q
K
E
M
G
E
H
F
T
D
Y
L
N
R
Y
R
V
N
Y
A
K
E
E
L
L
Q
--
T
K
D
N
L
T
I
I
A
G
K
S
G
Y
T
D
M
A
Y
F
Y
R
Q
F
K
K
H
T
G
E
T
P
N
R
Y
R
K
I
H
--------------
37
HHSearch
78.89
27%
-113
- C1 -
2K9S
-
A:
[3-106]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
V
R
E
A
C
Q
Y
I
S
D
H
L
-
A
D
S
N
-
F
D
I
A
S
V
A
Q
H
V
C
L
S
P
S
R
L
S
H
L
F
R
Q
Q
L
G
I
S
V
L
S
W
R
E
D
Q
R
I
S
Q
A
K
L
L
L
S
T
--
T
R
M
P
I
A
T
V
G
R
N
V
G
F
D
D
Q
L
Y
F
S
R
V
F
K
K
C
T
G
A
S
P
S
E
F
R
A
G
C
--------------
36
HHSearch
78.78
23%
-124
- C1 -
3MN2
2
?
A:
[3-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
R
Q
V
E
E
Y
I
E
A
N
W
-
M
R
-
P
-
I
T
I
E
K
L
T
A
L
T
G
I
S
S
R
G
I
F
K
A
F
Q
R
S
R
G
Y
S
P
M
A
F
A
K
R
V
R
L
Q
H
A
H
N
L
L
S
D
GA
T
P
T
T
V
T
A
A
A
L
S
C
G
F
S
N
L
G
H
F
A
R
D
Y
R
D
M
F
G
E
K
P
S
E
T
L
Q
R
A
--------------
3
PsiBlast_PDB
77.39
32%
-103
- C1 -
3OOU
1
?
A:
[10-108]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
S
Y
I
T
E
H
F
-
S
E
-
G
-
M
S
L
K
T
L
G
N
D
F
H
I
N
A
V
Y
L
G
Q
L
F
Q
K
E
M
G
E
H
F
T
D
Y
L
N
R
Y
R
V
N
Y
A
K
E
E
L
L
Q
--
T
K
D
N
L
T
I
I
A
G
K
S
G
Y
T
D
M
A
Y
F
Y
R
Q
F
K
K
H
T
G
E
T
P
N
R
Y
R
K
I
H
Q
-------------
12
PsiBlast_PDB
77.37
22%
-118
- C1 -
3MN2
2
?
A:
[1-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
A
V
R
Q
V
E
E
Y
I
E
A
N
W
-
M
R
-
P
-
I
T
I
E
K
L
T
A
L
T
G
I
S
S
R
G
I
F
K
A
F
Q
R
S
R
G
Y
S
P
M
A
F
A
K
R
V
R
L
Q
H
A
H
N
L
L
S
D
GA
T
P
T
T
V
T
A
A
A
L
S
C
G
F
S
N
L
G
H
F
A
R
D
Y
R
D
M
F
G
E
K
P
S
E
T
L
Q
R
A
R
-------------
33
HHSearch
77.20
23%
-111
- C1 -
3OIO
2
?
A:
[5-110]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Q
P
K
L
T
E
A
V
S
L
M
E
A
N
I
-
E
E
-
P
-
L
S
T
D
D
I
A
Y
Y
V
G
V
S
R
R
Q
L
E
R
L
F
K
Q
Y
L
G
T
V
P
S
K
Y
Y
L
E
L
R
L
N
R
A
R
Q
L
L
Q
Q
--
T
S
K
S
I
V
Q
I
G
L
A
C
G
F
S
S
G
P
H
F
S
S
T
Y
R
N
H
F
N
I
T
P
R
E
E
R
A
Q
R
A
-------------
5
PsiBlast_PDB
75.93
28%
-106
- C1 -
2K9S
-
A:
[10-103]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Y
I
S
D
H
L
-
A
D
-
S
N
F
D
I
A
S
V
A
Q
H
V
C
L
S
P
S
R
L
S
H
L
F
R
Q
Q
L
G
I
S
V
L
S
W
R
E
D
Q
R
I
S
Q
A
K
L
L
L
S
T
--
T
R
M
P
I
A
T
V
G
R
N
V
G
F
D
D
Q
L
Y
F
S
R
V
F
K
K
C
T
G
A
S
P
S
E
F
R
-----------------
4
PsiBlast_PDB
73.37
29%
-101
- C1 -
1D5Y
2
ROB_ECOLI
A:
[7-107]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
L
I
-
W
L
E
G
H
L
-
D
Q
-
P
-
L
S
L
D
N
V
A
A
K
A
G
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
G
H
A
I
G
A
Y
I
R
A
R
R
L
S
K
S
A
V
A
L
R
L
--
T
A
R
P
I
L
D
I
A
L
Q
Y
R
F
D
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
R
----------------
39
HHSearch
72.82
26%
-106
- C1 -
1D5Y
2
ROB_ECOLI
A:
[4-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
R
D
L
L
I
W
L
E
G
H
L
-
D
Q
-
P
-
L
S
L
D
N
V
A
A
K
A
G
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
G
H
A
I
G
A
Y
I
R
A
R
R
L
S
K
S
A
V
A
L
R
L
--
T
A
R
P
I
L
D
I
A
L
Q
Y
R
F
D
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
R
S
P
--------------
11
PsiBlast_PDB
72.75
25%
-118
- C1 -
4FE7
-
XYLR_ECOLI
A:
[313-406]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
R
N
H
A
-
C
K
-
G
-
I
K
V
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
H
A
M
I
H
A
E
K
L
E
K
A
R
S
L
L
I
S
--
T
T
L
S
I
N
E
I
S
Q
M
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
D
V
---------------
32
HHSearch
72.60
24%
-80
- C1 -
1BL0
2
MARA_ECOLI
A:
[9-118]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
I
T
I
H
S
I
L
D
W
I
E
D
N
L
-
E
S
-
P
-
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
G
H
S
L
G
Q
Y
I
R
S
R
K
M
T
E
I
A
Q
K
L
K
E
--
S
N
E
P
I
L
Y
L
A
E
R
Y
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
M
T
N
M
Q
G
E
S
---------
29
HHSearch
72.17
18%
-110
- C1 -
3GBG
1
TCPN_VIBC3
A:
[167-272]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
D
A
M
E
K
I
S
C
L
V
K
S
D
I
-
T
R
-
N
-
W
R
W
A
D
I
C
G
E
L
R
T
N
R
M
I
L
K
K
E
L
E
-
S
R
G
V
K
F
R
E
L
I
N
S
I
R
I
S
Y
S
I
S
L
M
K
T
--
G
E
F
K
I
K
Q
I
A
Y
Q
S
G
F
A
S
V
S
Y
F
S
T
V
F
K
S
T
M
N
V
A
P
S
E
Y
L
F
M
L
T
G
------------
21
Fugue
71.82
23%
-84
- C1 -
1D5Y
2
ROB_ECOLI
A:
[1-123]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
G
I
I
R
D
L
L
I
W
L
E
G
H
L
-
D
Q
-
P
-
L
S
L
D
N
V
A
A
K
A
G
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
G
H
A
I
G
A
Y
I
R
A
R
R
L
S
K
S
A
V
A
L
R
L
--
T
A
R
P
I
L
D
I
A
L
Q
Y
R
F
D
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
R
S
P
E
W
S
A
F
G
I
R
P
P
LRL
G
35
HHSearch
71.45
19%
-105
- C1 -
3W6V
2
?
A:
[37-142]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
P
L
A
E
V
V
A
W
A
L
E
H
L
-
H
E
-
Q
-
F
D
V
E
T
L
A
A
R
A
Y
M
S
R
R
T
F
D
R
R
F
R
S
L
T
G
S
A
P
L
Q
W
L
I
T
Q
R
V
L
Q
A
Q
R
L
L
E
T
--
S
D
Y
S
V
D
E
V
A
G
R
C
G
F
R
S
P
V
A
L
R
G
H
F
R
R
Q
L
G
S
S
P
A
A
Y
R
A
A
Y
R
A
------------
6
PsiBlast_PDB
69.75
26%
-92
- C1 -
3OIO
2
?
A:
[17-102]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
N
I
-
E
E
-
P
-
L
S
T
D
D
I
A
Y
Y
V
G
V
S
R
R
Q
L
E
R
L
F
K
Q
Y
L
G
T
V
P
S
K
Y
Y
L
E
L
R
L
N
R
A
R
Q
L
L
Q
Q
--
T
S
K
S
I
V
Q
I
G
L
A
C
G
F
S
S
G
P
H
F
S
S
T
Y
R
N
H
F
N
I
T
P
---------------------
8
PsiBlast_PDB
68.25
26%
-84
- C1 -
1BL0
2
MARA_ECOLI
A:
[16-115]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
D
W
I
E
D
N
L
-
E
S
-
P
-
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
G
H
S
L
G
Q
Y
I
R
S
R
K
M
T
E
I
A
Q
K
L
K
E
--
S
N
E
P
I
L
Y
L
A
E
R
Y
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
-
M
T
N
M
Q
-----------
25
Fugue
48.66
31%
-48
- C1 -
1BL0
2
MARA_ECOLI
A:
[9-62]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
I
T
I
H
S
I
L
D
W
I
E
D
N
L
-
E
S
-
P
-
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
G
H
S
L
G
Q
Y
I
R
S
-------------------------------------------------------------------