@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu08130: (2016-06-12 )
MSEALTFESKYALLYLGGGLLAMIYGLITFFMAFPAFTSRGNVIFTIKTGPSGEIFLRKRSVLFSEVKRLYMGRHQYSLKGIFFEDIIIEKTDGKIVRIPTWNIITNPLFFEAVERYILPHLNEEAQNNWISQFTEVQRKAYLKEFENHPKL
Atome Classification :
(20 SA)
--------------------------------------------------------.........10........20........30.....----.---..40........50........------60--.........70..---......80...--......90.-..----.....100.--......110--........120........130.......140.......150----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------MSE
A
L
T
FES
K
Y
A
L
L
Y
LG
G
G
L
L
A
M
I
Y
G
L
I
T
F
F
M
A
F
PA----F---TSRG
N
V
I
F
T
I
KTGPSG
E
I
F
L
R
K
------
R
---
S
V
L
F
S
E
V
K
R
L
YMG---RHQYSLK-
G
I
F
--
F
E
D
I
I
I
EKT-DG----
K
I
V
R
IPTWN--IIT
N
P
L
F
F
---
E
A
V
E
R
Y
I
LPH-LN
E
E
A
Q
N
N
W
I
S
Q
F
T
E
V
Q
R
K
A
Y
L
K
E
F
ENHPKL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
61.12
18%
-145
- C3 -
4Z2N
-
?
A:
[813-905]
-------------------------------------------------------------------------------------------------------
S
T
C
L
L
Q
P
T
--
S
S
A
L
V
N
A
T
E
------
W
P
P
F
V
V
T
L
D
E
V
E
L
I
H
F
E
---
R
V
Q
F
H
-
L
-
K
N
F
----
D
M
V
I
V
Y
K
-
D
Y
----
S
K
-
K
V
T
M
I
N
--
A
I
P
V
A
S
L
D
P
I
K
E
W
L
N
S
C
D
L
K
Y
-
T
E
G
V
Q
S
L
N
W
T
K
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
60.29
17%
-57
- C2 -
1R5E
-
?
A:
[29-133]
-------------------------------------------------------------------------
D
N
V
T
S
S
Q
L
L
S
V
R
H
Q
L
A
E
S
A
----
G
---
L
P
R
D
Q
H
E
F
V
S
S
Q
A
P
--
Q
S
L
R
N
R
------
Y
---
N
N
L
Y
S
H
T
Q
R
T
L
D
M
A
D
M
Q
H
R
Y
M
T
G
-
A
------------------------------------------
S
G
I
N
P
G
M
L
P
H
-
E
N
V
D
D
M
R
S
A
I
T
D
W
S
D
M
-
R
E
A
L
Q
H
A
M
G
I
H
A
D
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
59.82
18%
-152
- C3 -
4IFS
1
SSRP1_HUMAN
A:
[164-230]
---------------------------------------------------------------------------------------------------------
L
L
Y
P
L
---
E
R
G
F
I
Y
V
H
K
------
P
P
V
-
H
I
R
F
D
E
I
S
F
V
N
F
A
---
R
G
T
T
T
-
T
-
R
S
----
F
D
F
E
I
E
T
K
-
Q
G
----
T
---
Q
Y
T
F
S
--
S
I
E
R
E
E
Y
----
G
K
L
F
D
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
57.18
12%
-148
- C3 -
3PVL
5
A:
[471-572]
-----------------------------------------------------------------------------
K
W
P
L
L
F
S
R
F
Y
E
A
Y
K
F
----
S
GPP
L
P
K
S
D
V
I
V
A
V
N
--
W
T
G
V
Y
F
V
D
E
QEQVL-
L
---
E
L
S
F
P
E
I
M
A
V
S
S
S
---
R
G
T
K
-----
M
M
--
A
P
S
F
T
L
A
T
I
-
K
G
----
D
E
Y
T
F
T
S
S
-----
N
A
E
D
I
R
---
D
L
V
V
T
F
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
50.82
9%
-196
- C3 -
4CHJ
-
?
A:
[79-153]
----------------------------------------------------------------------------------------------------------------------
N
Q
K
V
------
R
---
P
I
Q
L
D
D
I
A
A
V
L
Y
G
----------S
K
M
L
RN
P
-
V
V
G
F
R
L
A
S
S
G
----
R
A
I
A
F
S
F
K
D
--
I
T
D
A
Q
C
F
V
---
S
F
L
D
D
E
I
K
K
N
-
Q
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
50.61
50%
-140
- C- -
1RH9
-
MAN4_SOLLC
A:
[284-303]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
G
-
L
T
Q
E
A
Q
D
K
W
A
S
Q
W
I
Q
V
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
48.42
14%
-122
- C3 -
4TYZ
-
?
A:
[53-109]
------------------------------------------------------------------------------------------------------------------------
A
H
------
F
---
S
I
E
Y
D
E
I
K
D
I
I
K
S
---
K
S
V
-----
K
M
F
--
E
N
A
I
E
V
K
T
H
-
L
N
----
D
T
I
F
L
T
N
F
L
-------
Q
R
D
---
Q
A
Y
S
A
----------
L
M
S
Q
W
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
42.94
18%
-31
* C1 *
1ZRO
11
?
A:
[8-601]
NEVLSNCRE
K
R
K
G
MKWDCKKKNDRS
N
Y
V
C
I
P
D
R
R
I
Q
LCIVNLAIIKTYT
K
E
T
M
K
D
H
F
I
E
A
S
K
K
E
S
Q
L
L
L
K
K
N
D
N
K
Y
N
S
K
F
C
N
D
L
K
N
S
F
L
D
Y
G
----
H
---
L
A
M
G
N
----------
D
M
D
F
G
G
Y
------
S
---
T
K
A
E
N
K
I
Q
E
V
F
K
G
---
A
H
G
E
--------------
I
S
E
H
-
K
I
----
K
N
F
R
K
K
W
W
N
--
E
F
R
E
K
L
W
E
---
A
M
L
S
E
H
K
N
N
I
C
K
N
I
P
Q
E
E
L
Q
I
T
Q
W
I
K
E
W
H
G
E
F
L
L
E
R
D
N
R
A
K
L
P
K
S
K
C
KNNALYEACE
K
E
C
I
D
P
C
M
K
Y
R
D
W
I
I
R
S
K
F
E
W
H
T
L
S
K
E
Y
E
T
Q
KVPKEN
A
E
N
Y
L
I
K
I
SENKNDAK
V
S
L
L
L
N
N
C
D
A
E
Y
S
K
Y
CDCKHT
T
T
L
V
K
S
V
L
N
GNDNTI
K
E
K
R
E
HID
L
D
D
F
S
K
F
GCDKNSVDTNTK
V
W
E
C
K
K
PYKLSTKDVCVP
P
R
R
Q
E
LCLGNIDRIYDKN
L
L
M
I
K
E
H
I
L
A
I
A
I
Y
E
S
R
I
L
K
R
K
Y
KNKD
D
K
E
V
C
K
I
I
N
K
T
F
A
D
I
R
D
I
I
G
GTDYWND
L
S
N
R
K
L
V
G
K
I
N
T
N
SNYVHRN
K
Q
N
D
K
L
F
R
D
E
W
W
K
V
I
K
K
D
V
W
N
V
I
S
WVFKDKTVCKEDDIENIP
Q
F
F
R
W
F
S
E
W
G
D
D
Y
C
Q
D
K
T
K
M
I
E
T
L
K
V
E
CCED
D
N
C
K
R
K
C
N
S
Y
K
E
W
I
S
K
K
K
E
E
Y
N
K
Q
A
K
Q
Y
Q
E
Y
Q
K
G
NNYKMYSEFKSIK
P
E
V
Y
L
K
K
YSEKCSNLNFEDEFKEELH
S
D
Y
K
N
KCTMCPEV
25
Fugue
42.55
25%
-136
- C2 -
2K6L
-
?
A:
[1-51]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
T
V
R
W
N
--
I
A
V
S
P
D
V
D
---
Q
S
V
R
M
F
I
A
A
Q
---
G
G
G
R
K
G
D
L
S
R
F
I
E
D
A
V
R
A
Y
L
F
E
R
A
V
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
42.00
15%
-120
- C3 -
2CAY
1
VPS36_YEAST
A:
[73-138]
------------------------------------------------------------------------------------------------------------------------
N
S
------
L
---
G
L
E
L
D
D
L
A
Y
V
N
Y
S
---
S
G
F
L
T
---
R
----
S
P
R
L
I
L
F
F
K
-
D
P
SSST
E
F
V
Q
L
S
F
R
K
---
S
D
G
V
L
F
S
---
Q
A
T
E
R
----------
A
L
E
N
I
L
T
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
41.52
12%
-88
- C1 -
2L6O
-
?
A:
[1-114]
--------------------------------------------------------
M
G
A
G
Q
T
P
H
P
Q
---------------------
L
I
W
P
A
----
L
---
L
K
Q
--------
Q
G
C
N
E
L
L
P
L
R
T
------
N
---
D
D
W
Q
R
F
C
A
D
S
K
H
L
---
L
Q
Y
-----------
G
D
K
L
V
D
-
S
-
N
F
----
H
C
F
V
L
E
E
D
A
HW
H
P
A
A
P
L
P
P
---
E
G
L
N
D
L
I
R
A
H
-
C
A
T
L
G
H
C
C
-
T
S
K
M
H
L
H
S
V
M
D
A
I
D
F
L
N
A
L
E
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
37.87
27%
-84
- C2 -
3UVA
-
RHAA_BACHD
A:
[334-388]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
----
S
I
N
R
I
A
A
W
T
--
I
G
T
R
N
V
I
K
---
A
L
L
F
A
M
L
I
P
H
----
K
Q
L
K
E
W
Q
E
T
G
D
Y
T
R
R
L
A
V
L
E
E
F
K
T
Y
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
34.34
19%
-51
- C2 -
2BBM
-
B:
[1-26]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
R
W
K
K
N
F
I
A
V
S
A
A
N
R
F
K
K
I
S
S
S
G
A
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
33.94
19%
-51
- C2 -
2LV6
-
B:
[1-26]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
R
W
K
K
N
F
I
A
V
S
A
A
N
R
F
K
K
I
S
S
S
G
A
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
33.67
27%
-56
- C2 -
3UU0
-
RHAA_BACHD
A:
[334-388]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
----
S
I
N
R
I
A
A
W
T
--
I
G
T
R
N
V
I
K
---
A
L
L
F
A
M
L
I
P
H
----
K
Q
L
K
E
W
Q
E
T
G
D
Y
T
R
R
L
A
V
L
E
E
F
K
T
Y
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
33.56
11%
-81
- C3 -
3F5R
1
POB3_YEAST
A:
[64-109]
------------------------------------------------------------------------------------------------------------------------
K
P
------
F
---
L
L
P
A
T
E
L
S
T
V
Q
W
S
---
R
G
C
R
----
G
-----
Y
D
L
K
I
N
T
K
-
N
Q
----
G
V
I
Q
L
D
G
F
-----
S
Q
D
D
Y
N
---
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
33.25
27%
-57
* C2 *
3P14
-
RHAA_BACHD
A:
[328-382]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
----
S
I
N
R
I
A
A
W
T
--
I
G
T
R
N
V
I
K
---
A
L
L
F
A
M
L
I
P
H
----
K
Q
L
K
E
W
Q
E
T
G
D
Y
T
R
R
L
A
V
L
E
E
F
K
T
Y
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
32.75
27%
-48
- C2 -
3UXI
-
RHAA_BACHD
A:
[334-388]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
----
S
I
N
R
I
A
A
W
T
--
I
G
T
R
N
V
I
K
---
A
L
L
F
A
M
L
I
P
H
----
K
Q
L
K
E
W
Q
E
T
G
D
Y
T
R
R
L
A
V
L
E
E
F
K
T
Y
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
32.34
14%
-127
- C3 -
1NR4
4
CCL17_HUMAN
A:
[15-50]
------------------------------------------------------------------------------------------------------------------------
F
K
------
G
---
A
I
P
L
R
K
L
K
T
W
Y
Q
T
---
S
E
D
C
------
S
--
R
D
A
I
V
F
V
T
V
-
Q
G
----
R
A
I
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
32.30
10%
-139
- C3 -
1MIX
-
TLN1_CHICK
A:
[305-365]
------------------------------------------------------------------------------
L
K
T
Y
G
V
S
F
F
L
V
K
E
K
M
KGK
N
---
K
L
-
V
P
R
L
L
G
I
T
--
K
E
C
V
M
R
V
D
E
KTKEVI
Q
---
E
W
S
L
T
N
I
K
R
W
A
A
S
---
P
K
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------