@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu14750: (2016-06-23 )
MKKTFVKKAMLTTAAMTSAALLTFGPDAASAKTPVDNTAVQLQHQASTNEDLNTFIDILNQCIYEQDGVYYFDSEKAVELGMTKEEAQVIATLWESTSEFFSIVSQCVYLEDGNYKFDTEKAVELGFTEKEALALEQFFSAVSLKIHILQAAIVLQDDVYSYDKDAALQAGATPLQADVYEKLFSALSQEQLAAIYDMIHPQA
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------.........10....-----.....20........30........40..----------..----.-----...50..-...----...60---------------..---......70........80..-----.......90.--...--.---.-----..100------...-....110----....---------.....120....-..--.130---.......140......------------.------150...---....160.-------.-.....170--------....--...180---.-.....---.-.190.......200.-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------MK
K
T
F
V
K
K
A
M
-
L
T
T
A
-----
A
M
T
S
A
A
L
L
T
FGPDAASAKTPVDN
T
A
V
Q
L
Q
----------HQ----A-----STNE
D
L
N
-
T
F
I
----
D
I
L
N
Q
---------------
C
I
---YEQD
G
V
Y
Y
FDSE
K
A
VEL-GM-----
T
K
E
E
A
Q
V
I
A
T
--
L
W
E
--
S
---
T
-----
S
E
F
F
S
------
I
V
S
-
Q
C
V
Y
L------EDG
N
---------
Y
KFDTE
K
A
V
ELG-F
T
--
E
K
E
A
---
L
A
L
E
Q
F
F
S
A
V
S
L
K
I
H
I
------------
L
------
Q
A
A
I
V
L
---QDDVYSYD-------
K
-
D
A
A
LQAGA--------TP
L
Q
--
A
D
V
Y
E
----
K
-
L
F
S
A
L
---
S
-
Q
E
Q
L
A
A
I
Y
D
M
IHPQA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
59.02
17%
-39
- C3 -
1J1T
2
?
A:
[6-233]
----------------------------------------------------------------------------------------------------------------------------------------------------------ST
I
P
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S
I
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S
G
S
I
-
F
D
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E
GDNPN
P
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D
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V
F
V
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A
Q
H
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---
W
R
----------
H
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----
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V
K
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----
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Q
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Y
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V
F
---
E
A
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-
Q
H
-----
H
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T
G
T
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--
V
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V
--
S
DTD
E
-----
S
G
F
N
D
SVANNG
I
F
D
-
V
Y
V
R
L
------
R
N
T
S
---------
G
N
E
E
K
F
A
L
G
T
M
T
-
S
G
--
E
T
F
N
---
L
R
V
V
N
N
Y
G
D
V
E
V
T
A
F
G
------------
N
------
S
F
G
I
P
V
---
E
D
D
S
Q
S
Y
F
-------
K
F
G
N
Y
L
Q
S
Q
D
PYTLDKCG
E
A
G
N
--
S
N
S
F
K
----
N
-
C
F
E
D
L
---
G
I
T
E
S
K
V
T
M
T
N
V
T
Y
T
R
E
T
N-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
58.48
17%
-68
- C2 -
4WBD
3
BSHC_BACSU
A:
[2-541]
H
M
Q
L
T
E
L
S
I
K
N
QN
V
F
V
Q
H
Y
I
D
GKEEMSSFFDYSIHHKD
M
W
R
E
R
L
E
D
L
S
S
RFFA
R
E
E
L
A
A
Y
L
T
S
Y
H
NKFGS
S
A
M
Q
S
A
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DPS
S
A
A
V
V
G
GQQAGLLTGP
L
Y
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AGEDHDLDEIN
F
V
H
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S
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EN
G
P
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K
K
K
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W
K
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A
A
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A
A
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A
A
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L
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----------
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C
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----
D
F
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---------------
L
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A
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L
N
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---
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---
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K
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---
A
N
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Y
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K
------------
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------
N
G
R
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V
I
---
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W
T
-------
R
-
D
E
L
H
T
H
M
E
--------
E
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P
E
--
R
F
S
N
N
----
V
-
V
T
R
P
L
---
M
-
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T
L
A
F
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A
G
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G
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I
N
Y
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K
Q
A
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A
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M
GFKM
P
P
V
M
P
R
L
N
I
T
I
L
E
R
H
I
E
K
K
L
A
E
R
NIS
L
Q
D
A
I
E
RGT
E
N
Q
R
E
T
Y
F
E
R
Q
IP
E
E
F
T
A
V
M
D
Q
A
K
S
Q
I
E
A
I
H
K
T
V
R
Q
E
A
L
K
V
DQSL
E
P
L
L
L
K
N
A
A
F
I
Q
D
Q
L
Q
F
L
E
R
T
V
M
K
R
I
E
E
K
E
G
Y
V
L
K
D
Y
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N
S
IKPLLAPQERIWNI
M
Y
Y
L
N
R
YG
P
K
F
F
T
T
F
K
N
LPFSFQN
Q
H
Q
V
V
K
L
21
Fugue
55.48
10%
-118
- C7 -
1MPG
1
3MG2_ECOLI
A:
[100-282]
-----------------------------------------------------------------------------------------------------------------------------------------------------------A
A
R
P
G
L
R
L
P
G
C
-
V
D
A
F
-----
E
Q
G
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A
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Q
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V
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V
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M
A
A
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A
Q
L
Y
G
----------
E
R
----
L
-----
D
D
F
P
E
Y
I
-
C
F
P
----
T
--------------------------
P
Q
R
L
A
A
A
D
P
Q
A
L
K
A
L
-
G
M
-----
P
L
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R
A
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A
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I
H
--
L
A
N
--
A
---
A
-----
L
E
-------------------------------------------
G
T
L
P
M
T
-
I
P
--
G
D
V
E
---
Q
A
M
K
T
L
Q
T
F
P
G
I
G
R
W
T
------------
A
------
N
Y
F
A
L
R
G
WQ
A
K
D
V
F
L
P
D
---------
D
Y
L
I
K
Q
R
F
--------
P
G
M
T
--
P
A
Q
I
R
----
R
-
Y
A
E
R
W
---
K
-
P
W
R
S
Y
A
L
L
H
I
W
Y
T
E
G
W
Q
P
D
E
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
50.39
15%
-85
- C6 -
2W69
6
PA_I75A3
A:
[7-203]
------------------------------------------------------------------------------------------------------------------------------------------------------------
A
M
E
D
F
V
R
Q
C
F
N
P
M
I
V
-----
E
L
A
E
K
A
M
K
E
Y
G
E
D
----------
L
K
I
E
T
N
----------
K
F
----
A
-----
A
I
C
T
H
L
E
-
V
C
F
----
M
Y
S
D
F
---------------
H
F
---
I
N
E
Q
G
-----
E
S
I
V
V
E
L
-
D
D
-----
P
N
A
L
K
H
R
F
E
I
--
I
E
G
--
R
---
D
-----
R
T
M
A
W
------
T
V
V
-
N
S
I
C
N
------
T
T
G
A
EKPKFLPDL
Y
D
Y
K
E
N
R
F
I
E
I
G
-
V
T
RR
E
V
H
I
---
Y
Y
L
E
K
A
N
K
I
K
S
T
H
I
H
I
------------
F
S
FT
G
--
E
E
M
A
T
K
---
A
D
Y
T
L
D
E
E
-------
S
-
R
A
R
I
K
T
R
L
--------
F
T
I
R
--
Q
E
M
A
N
----
R
G
L
W
D
S
F
---
R
-
Q
S
E
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
49.91
18%
-47
- C1 -
4Q0W
4
RAD2_YEAST
A:
[1-362]
--------------------------------------------------------------GVHS
F
W
D
I
A
GPT
A
R
P
V
R
LESLED
K
R
M
A
V
DASI
W
I
Y
Q
F
L
K
A
V
RDQNAVKN
S
H
I
T
G
F
F
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R
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K
L
L
Y
F
GIR
P
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V
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M
D
M
-
I
K
E
V
-----
Q
---
E
L
L
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R
F
G
I
P
Y
I
T
A
P
M
E
A
E
A
Q
C
A
E
L
L
----------
Q
L
NLVD
G
-----
I
I
T
D
D
S
D
-
V
F
L
FGGT
K
I
Y
K
N
---------------
M
F
---
H
E
K
N
Y
V
E
F
Y
D
A
E
S
I
L
K
L
L
G
L
-----
D
R
K
N
M
I
E
L
A
Q
--
L
L
G
--
S
---
D
YTNGL
K
G
M
G
P
------
V
S
S
-
I
E
V
I
A
------
E
F
G
N
---------
L
K
N
F
K
D
W
Y
N
N
G
Q
-
F
D
--
K
R
K
Q
---
E
T
E
N
K
F
--
E
K
D
L
R
K
K
L
------------
V
------
N
N
E
I
I
L
---
D
D
D
F
P
S
V
M
-------
V
-
Y
D
A
Y
M
R
----------
P
E
V
D
--
H
D
T
T
P
----
F
-
V
W
G
V
P
---
D
-
L
D
M
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S
F
M
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T
Q
L
G
W
P
H
E
K
S
D
E
I
L
I
PLI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
49.69
17%
-100
- C5 -
2DVY
-
?
A:
[1-223]
------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
H
L
T
S
V
E
A
S
-
V
S
F
E
-----
N
G
K
I
V
V
R
L
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T
R
P
T
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K
I
R
V
K
K
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N
G
V
G
I
P
----------
V
S
----
T
RKKSF
P
S
D
E
N
L
R
D
Y
Y
I
----
E
W
--
Q
---------------
I
S
---
Y
A
R
D
G
K
Y
D
Y
E
L
S
R
M
V
R
L
-
A
H
E
H
GIL
T
Y
N
D
I
Y
E
L
L
K
--
F
A
D
--
D
---
V
-----
K
S
----------------
Y
L
------
E
D
K
G
---------
I
R
R
E
S
T
N
E
E
L
Y
G
-
F
N
--
I
Y
E
D
V
Y
P
V
A
K
K
E
L
P
S
G
E
F
I
G
I
V
L
K
HKQRA
V
G
Y
Q
S
M
V
------
Y
V
C
I
P
L
---
T
N
V
E
P
S
L
A
-------
G
-
R
V
A
R
R
N
E
V
--------
V
K
Y
E
V
P
V
D
L
M
K
----
E
-
L
L
K
A
F
I
I
A
S
-
E
T
H
K
N
D
I
V
K
F
L
R
S
I
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
40.43
13%
-102
- C4 -
1B0A
-
FOLD_ECOLI
A:
[2-288]
-------------------------------------------------------------------------------------------------------------------------------------------AAKIID
G
K
T
I
A
Q
Q
V
R
S
E
V
A
Q
K
V
Q
A
R
I
A
-
A
G
-
L
-----
R
A
P
G
L
A
V
V
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V
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N
P
A
S
Q
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A
S
K
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K
A
C
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GFVSR
S
Y
D
L
P
E
----
T
-----
T
S
E
A
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L
L
-
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L
I
----
D
T
L
N
A
DNTID
G
I
L
V
Q
L
PLPA
G
I
---
D
N
V
K
V
L
E
R
I
H
P
D
K
D
V
D
G
-
F
H
-----
P
Y
N
V
G
R
L
C
Q
R
--
A
P
-------
R
-----
L
R
P
C
T
------
P
R
G
-
I
V
T
L
L
------
E
R
Y
N
---------
I
D
T
F
G
L
N
A
V
V
I
G
-
A
S
--
N
I
V
G
---
R
P
M
S
M
E
L
L
L
A
G
C
T
T
T
V
------------
T
H
RFTKN
L
R
H
H
V
E
---
N
A
D
L
L
I
V
A
VGKPGFI
P
-
G
D
W
I
K
E
G
A
--------
I
V
I
D
--
V
G
I
N
R
L
ENG
K
-
V
V
G
D
V
---
V
-
F
E
D
A
A
K
R
A
S
Y
I
T
P
V
P
GG
V
G
P
M
T
V
A
T
L
I
E
N
T
L
Q
A
C
V
EYHDPQDE---------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
39.81
14%
-265
* C8 *
2JNS
-
A:
[18-46]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
--------
S
Y
E
E
--
K
R
Q
L
S
----
L
-
D
I
N
K
L
---
P
-
G
E
K
L
G
R
V
V
H
I
I
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
39.30
18%
-93
* C7 *
1Y9L
2
MXIM_SHIFL
A:
[6-115]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
E
W
H
I
-
V
P
-----
V
S
K
D
Y
F
S
I
P
N
D
L
L
W
S
F
N
T
---
T
-----
N
K
S
I
N
------
V
Y
S
-
K
C
I
S
G
K
A
V
Y
S
F
N
A
G
K
---------
F
M
G
N
F
N
V
K
E
V
D
G
C
F
M
--
D
A
Q
K
---
I
A
I
D
K
L
F
S
M
L
K
D
G
V
V
L
------------
K
------
G
N
K
I
------
N
D
T
I
L
I
E
-------
K
-
D
G
E
V
K
L
K
L
--------
I
R
G
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
37.95
28%
-369
- C8 -
3LN6
-
GSHAB_STRA5
A:
[549-580]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
A
I
D
I
A
-
F
T
--
E
D
S
A
---
I
L
V
E
E
Y
I
E
G
T
E
Y
R
F
F
V
------------
L
------
E
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
37.20
30%
-175
- C8 -
1LGH
5
LHB1_PHAMO
B:
[6-25]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-
G
L
-----
T
E
E
E
A
I
A
V
H
D
--
Q
F
K
--
T
---
T
-----
F
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
26.62
11%
-85
- C8 -
1NKZ
4
LHB5_RHOAC
B:
[2-20]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
-----
T
A
E
Q
S
E
E
L
H
K
--
Y
V
I
--
D
---
G
-----
T
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
26.10
33%
-34
- C8 -
5E4V
-
NCAP_MEASF
A:
[356-382]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
S
S
T
L
A
S
E
L
-
G
I
-----
T
A
E
D
A
R
L
V
S
E
--
I
A
M
--
H
---
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
25.62
24%
-22
- C8 -
1WRG
-
LHB_RHORT (first)
A:
[9-29]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-
G
I
-----
T
E
G
E
A
K
E
F
H
K
--
I
F
T
--
S
---
S
-----
I
L
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
24.63
23%
-57
- C8 -
3JB7
-
?
A:
[558-618]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
T
K
D
I
Y
N
-
T
F
V
L
---
D
V
A
S
K
---------------
C
T
---
V
P
R
F
G
P
Y
Y
A
K
N
M
E
V
F
E
A
-
G
N
-----
R
Q
S
Q
V
R
Y
V
N
A
--
A
W
Q
--
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
23.30
23%
-49
- C8 -
3JB6
-
?
A:
[558-608]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
T
K
D
I
Y
N
-
T
F
V
L
---
D
V
A
S
K
---------------
C
T
---
V
P
R
F
G
P
Y
Y
A
K
N
M
E
V
F
E
A
-
G
N
-----
R
Q
S
Q
V
R
Y
V
N
A
--
A
W
Q
--
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
16.86
19%
-116
- C8 -
2PQ4
-
NAPA_ECOLI
B:
[5-31]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
S
F
M
K
A
N
A
-
V
A
A
A
-----
A
A
A
A
G
L
S
V
P
G
V
A
R
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
16.15
33%
51
- C8 -
2H2M
-
COMD1_HUMAN
A:
[79-102]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
K
K
Q
-
G
-
G
I
-----
T
S
D
Q
A
A
V
I
S
K
--
F
W
K
--
S
---
H
-----
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
15.97
30%
60
- C8 -
1DX7
-
LHB1_RHOSH
A:
[9-28]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
G
L
-----
T
D
E
Q
A
Q
E
L
H
S
--
V
Y
M
--
S
---
G
-----
L
W
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
2.77
20%
0
- C- -
3WMM
-
?
B:
[8-27]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
G
L
-----
T
D
D
E
A
K
E
F
H
A
--
I
F
M
--
Q
---
S
-----
M
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------