@TOME V2.3
(Nov 2016)

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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : Rv0105c: (2016-04-19 )
MSARCQITGRTVGFGKAVSHSHRRTRRRWPPNIQLKAYYLPSEDRRIKVRVSAQGIKVIDRDGHRGRRRAARAGSAPAHFARQAGSSLRTAAIL

Atome Classification :

(20 SA) ------------------------------.....----....10........--20------------.-....-------....30.---.......40...---....-.50....------....--60..-......70.-.......80..--....-..90...----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) ------------------------------MSARC----QITGRTVGFGKAVS--H-------------S-HRRT-------RRRWPPN---IQLKAYYLPSED---RRIK-VRVSAQG------IKVI--DRDG-HRGRRRAAR-AGSAPAHFARQ--AGSS-LRTAAIL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6 PsiBlast_PDB 90.9941% -47 - C8 -5GAH - RL28_ECOLI Y:[2-63] -------------------------------SRVC----QVTGKRPVTGNNRS--H-------------A-LNAT-------KRRFLPN---LHSHRFWVESEK---RFVT-LRVSAKG------MRVI--DKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3 PsiBlast_PDB 90.5241% -47 - C8 -5GAD - RL28_ECOLI Y:[2-63] -------------------------------SRVC----QVTGKRPVTGNNRS--H-------------A-LNAT-------KRRFLPN---LHSHRFWVESEK---RFVT-LRVSAKG------MRVI--DKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14 HHSearch 89.6038% -41 - C8 -5GAE - RL28_ECOLI Y:[2-72] -------------------------------SRVC----QVTGKRPVTGNNRS--H-------------A-LNAT-------KRRFLPN---LHSHRFWVESEK---RFVT-LRVSAKG------MRVI--DKKG-IDTVLAELR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5 PsiBlast_PDB 89.0841% -49 - C8 -5GAG - RL28_ECOLI Y:[2-63] -------------------------------SRVC----QVTGKRPVTGNNRS--H-------------A-LNAT-------KRRFLPN---LHSHRFWVESEK---RFVT-LRVSAKG------MRVI--DKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9 PsiBlast_PDB 88.7740% -54 - C8 -5GAF - RL28_ECOLI Y:[5-63] ----------------------------------C----QVTGKRPVTGNNRS--H-------------A-LNAT-------KRRFLPN---LHSHRFWVESEK---RFVT-LRVSAKG------MRVI--DKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4 PsiBlast_PDB 86.2441% -46 - C8 -5GAE - RL28_ECOLI Y:[2-63] -------------------------------SRVC----QVTGKRPVTGNNRS--H-------------A-LNAT-------KRRFLPN---LHSHRFWVESEK---RFVT-LRVSAKG------MRVI--DKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10 PsiBlast_PDB 62.0536% -57 - C8 -2JZ6 - RL28_THEMA A:[6-61] ------------------------------MAKRC----EVCGKAPRSGNTVS--H-------------S-DKKS-------ERWFRPN---LQKVRVVLP--D---GTIKRMRVCTSC------LK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25 Fugue 61.4926% -21 * C8 *2JZ6 - RL28_THEMA A:[1-77] -------------------------QGHMIMAKRC----EVCGKAPRSGNTVS--H-------------S-DKKS-------ERWFRPN---LQKVRVVLP-DG---TIKR-MRVCTSC------LKSG--KVKK-YVGQVSEVG-S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15 HHSearch 60.2927% -29 - C8 -2JZ6 - RL28_THEMA A:[6-73] ------------------------------MAKRC----EVCGKAPRSGNTVS--H-------------S-DKKS-------ERWFRPN---LQKVRVVLP-DG---TIKR-MRVCTSC------LKSG--KVKKYVGQVS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32 Fugue 60.0917% -2 - C4 -4AKA - ? A:[19-124] ------------------------------GADSCKYCLQLYDETYERGSYIEVYK-------------S-VGSL-------SPPWTPG---SVCVPFVNDTKR---ERPY-WYLFDNV---------------N-YTGRITGLG-HGTCIDDFTKSGFKGIS-SIKRCIQTKDGKVECINQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29 Fugue 60.0010% -34 - C6 -4GEU SAS6_CAEEL A:[2-168] -------------------------------TSKI----ALFDQTLIASLLQP--L-------------SLNQPD-------FKAYKTK---VKLKISEQRNETSGEKELK-FEISRSDDFEFLFSETL--NNEK-YQILARDHD-LTVDFDAFPKV--IIQH-LLCPTEINIILDAEKNFCSFELFSKTPWSKGKIFSIKLHAVR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17 HHSearch 56.4723% -7 - C8 -2ZJR - RL28_DEIRA U:[8-79] -----------------------------------------TGKKNLVVNSVI--RRGKARADGGVGRKT-TGIT-------KRVQRAN---LHKKAIRE--NG---QVKT-VWLSANA------LRTL--SKGP-YKGIE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11 PsiBlast_PDB 56.3635% -18 - C8 -4WCE - RL28_STAA8 U:[10-55] -------------------------------------------RKASTGNRRS--H-------------A-LNST-------KRRWNAN---LQKVRILVDGKP---K--K-VWVSARA------LK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30 Fugue 55.9417% -32 - C6 -4PW2 ? A:[72-585] RYEEIDCLINDDATIKGRREGSEVYMPFSWMEKYF----EVYGKVVQYDGYDR--F-------------E-FSHSYSKVYAQREQYHPNGVFMSFEGYNVEVRD---R-VK-CISGVEG------VPLS--TQWG-PQGYFYAIQIAQYGLSHYSKN--LTER-PPHVEVYDTAEERSAWTVPKGCSLTRVYDKTRATSVREFSAPENSEGVSLPLGNTKDFIISFDLKFTSNGSVSVILETTEKGPPFVIHYVTTTQLILLKDRDITYGIGPRTTWTTVTRDLLTDLRKGIGLSNTKAVKATKTMPRRVVKLVVHGTGTIDNITISTTSHMAAFYAASDWLVRNQDERGGWPIMVTRKLGEGFRALEPGWYSAMAQGQAMSTLVRAYLMTKDDRYLKAALRATGPFKLPSEQHGVKAVFMNKYDWYEEYPTIPSSFVLNGFIYSLIGLFDLAQTAGEKLGRDAGQLYSKGMESLKVMLPLYDTGSGTIYDLRHFILGTAPNLARWDYHTTHINQLQLLGTIDNSPIFRDSVKRWKSYLKGGRAKHN
8 PsiBlast_PDB 54.5640% 4 - C7 -4UY8 - RL28_ECOLI X:[4-62] ----------------------------------C----QVTGKRPVTGNNRS--H-------------A-LNAT-------KRRFLPN---LHSHRFWVESEK---RFVT-LRVSAKG------MRVI--DKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12 PsiBlast_PDB 53.7435% 0 - C8 -4WFA - RL28_STAA8 U:[12-55] ---------------------------------------------ASTGNRRS--H-------------A-LNST-------KRRWNAN---LQKVRILVDGKP---K--K-VWVSARA------LK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16 HHSearch 53.7233% -11 - C8 -4WFA - RL28_STAA8 U:[12-55] ---------------------------------------------ASTGNRRS--H-------------A-LNST-------KRRWNAN---LQKVRILV--DG---KPKK-VWVSARA------LK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7 PsiBlast_PDB 53.3340% 3 - C7 -3J5L - RL28_ECOLI X:[4-62] ----------------------------------C----QVTGKRPVTGNNRS--H-------------A-LNAT-------KRRFLPN---LHSHRFWVESEK---RFVT-LRVSAKG------MRVI--DKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2 PsiBlast_PDB 53.1441% 32 - C- -5ADY - RL27_ECOLI (first) X:[1-62] -------------------------------SRVC----QVTGKRPVTGNNRS--H-------------A-LNAT-------KRRFLPN---LHSHRFWVESEK---RFVT-LRVSAKG------MRVI--DKKG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31 Fugue 50.3317% -24 - C5 -4KV2 - ? A:[20-109] -----------------------------MATTRV----TILT--------------------------G-RRMT-------DLVLPAA---VPMETY-IDDTV---AVLS-EVLEDTP------ADVLGGFDFT-AQGVWAFAR-PGSPPLKLDQS--LDDAGVVDGSLLTLVS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------