@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv0105c: (2016-04-19 )
MSARCQITGRTVGFGKAVSHSHRRTRRRWPPNIQLKAYYLPSEDRRIKVRVSAQGIKVIDRDGHRGRRRAARAGSAPAHFARQAGSSLRTAAIL
Atome Classification :
(20 SA)
------------------------------.....----....10........--20------------.-....-------....30.---.......40...---....-.50....------....--60..-......70.-.......80..--....-..90...----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------MS
A
R
C
----
Q
I
TGRTVGF
G
K
A
V
S
--
H
-------------
S
-
H
R
R
T
-------RRRWPPN---
I
Q
L
K
A
Y
YLPSED---
R
R
I
K
-
V
R
V
SAQ
G
------
I
K
V
I
--DRDG-HRG
R
R
R
AAR-AGSA
P
A
H
F
A
R
Q
--AGSS-LR
T
A
AIL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
90.99
41%
-47
- C8 -
5GAH
-
RL28_ECOLI
Y:
[2-63]
-------------------------------
S
R
V
C
----
Q
V
T
G
K
R
P
V
T
G
N
N
R
S
--
H
-------------
A
-
L
N
A
T
-------
K
R
R
F
L
P
N
---
L
H
S
H
R
F
W
V
E
S
E
K
---
R
F
V
T
-
L
R
V
S
A
K
G
------
M
R
V
I
--
D
K
K
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
90.52
41%
-47
- C8 -
5GAD
-
RL28_ECOLI
Y:
[2-63]
-------------------------------
S
R
V
C
----
Q
V
T
G
K
R
P
V
T
G
N
N
R
S
--
H
-------------
A
-
L
N
A
T
-------
K
R
R
F
L
P
N
---
L
H
S
H
R
F
W
V
E
S
E
K
---
R
F
V
T
-
L
R
V
S
A
K
G
------
M
R
V
I
--
D
K
K
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
89.60
38%
-41
- C8 -
5GAE
-
RL28_ECOLI
Y:
[2-72]
-------------------------------
S
R
V
C
----
Q
V
T
G
K
R
P
V
T
G
N
N
R
S
--
H
-------------
A
-
L
N
A
T
-------
K
R
R
F
L
P
N
---
L
H
S
H
R
F
W
V
E
S
E
K
---
R
F
V
T
-
L
R
V
S
A
K
G
------
M
R
V
I
--
D
K
K
G
-
I
D
T
V
L
A
E
L
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
89.08
41%
-49
- C8 -
5GAG
-
RL28_ECOLI
Y:
[2-63]
-------------------------------
S
R
V
C
----
Q
V
T
G
K
R
P
V
T
G
N
N
R
S
--
H
-------------
A
-
L
N
A
T
-------
K
R
R
F
L
P
N
---
L
H
S
H
R
F
W
V
E
S
E
K
---
R
F
V
T
-
L
R
V
S
A
K
G
------
M
R
V
I
--
D
K
K
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
88.77
40%
-54
- C8 -
5GAF
-
RL28_ECOLI
Y:
[5-63]
----------------------------------
C
----
Q
V
T
G
K
R
P
V
T
G
N
N
R
S
--
H
-------------
A
-
L
N
A
T
-------
K
R
R
F
L
P
N
---
L
H
S
H
R
F
W
V
E
S
E
K
---
R
F
V
T
-
L
R
V
S
A
K
G
------
M
R
V
I
--
D
K
K
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
86.24
41%
-46
- C8 -
5GAE
-
RL28_ECOLI
Y:
[2-63]
-------------------------------
S
R
V
C
----
Q
V
T
G
K
R
P
V
T
G
N
N
R
S
--
H
-------------
A
-
L
N
A
T
-------
K
R
R
F
L
P
N
---
L
H
S
H
R
F
W
V
E
S
E
K
---
R
F
V
T
-
L
R
V
S
A
K
G
------
M
R
V
I
--
D
K
K
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
62.05
36%
-57
- C8 -
2JZ6
-
RL28_THEMA
A:
[6-61]
------------------------------
M
A
K
R
C
----
E
V
C
G
K
A
P
R
S
G
N
T
V
S
--
H
-------------
S
-
D
K
K
S
-------
E
R
W
F
R
P
N
---
L
Q
K
V
R
V
V
L
P
--
D
---
G
T
I
K
R
M
R
V
C
T
S
C
------
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
61.49
26%
-21
* C8 *
2JZ6
-
RL28_THEMA
A:
[1-77]
-------------------------QGHMI
M
A
K
R
C
----
E
V
C
G
K
A
P
R
S
G
N
T
V
S
--
H
-------------
S
-
D
K
K
S
-------
E
R
W
F
R
P
N
---
L
Q
K
V
R
V
V
L
P
-
D
G
---
T
I
K
R
-
M
R
V
C
T
S
C
------
L
K
S
G
--
K
V
K
K
-
Y
V
G
Q
V
S
E
V
G
-
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
60.29
27%
-29
- C8 -
2JZ6
-
RL28_THEMA
A:
[6-73]
------------------------------
M
A
K
R
C
----
E
V
C
G
K
A
P
R
S
G
N
T
V
S
--
H
-------------
S
-
D
K
K
S
-------
E
R
W
F
R
P
N
---
L
Q
K
V
R
V
V
L
P
-
D
G
---
T
I
K
R
-
M
R
V
C
T
S
C
------
L
K
S
G
--
K
V
K
K
Y
V
G
Q
V
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
60.09
17%
-2
- C4 -
4AKA
-
?
A:
[19-124]
------------------------------
G
A
D
S
C
KY
C
L
Q
L
Y
D
E
T
Y
E
R
G
S
Y
I
E
V
Y
K
-------------
S
-
V
G
S
L
-------
S
P
P
W
T
P
G
---
S
V
C
V
P
F
V
N
D
T
K
R
---
E
R
P
Y
-
W
Y
L
F
D
N
V
---------------
N
-
Y
T
G
R
I
T
G
L
G
-
H
G
T
C
I
D
D
F
T
K
S
GF
K
G
I
S
-
S
I
K
R
C
I
Q
T
KDG
K
V
E
C
I
NQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
60.00
10%
-34
- C6 -
4GEU
2
SAS6_CAEEL
A:
[2-168]
-------------------------------
T
S
K
I
----
A
L
F
D
Q
T
L
I
A
S
L
L
Q
P
--
L
-------------
S
L
N
Q
P
D
-------
F
K
A
Y
K
T
K
---
V
K
L
K
I
S
E
Q
R
N
E
T
SG
E
K
E
L
K
-
F
E
I
S
R
S
D
DFE
F
L
F
S
E
T
L
--
N
N
E
K
-
Y
Q
I
L
A
R
D
H
D
-
L
T
V
D
F
D
A
F
P
K
V
--
I
I
Q
H
-
L
L
C
P
T
E
I
N
I
I
L
D
AEKN
F
C
S
F
E
L
F
S
K
T
PWSKGKI
F
S
I
K
L
H
A
VR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
56.47
23%
-7
- C8 -
2ZJR
-
RL28_DEIRA
U:
[8-79]
-----------------------------------------
T
G
K
K
N
L
V
V
N
S
V
I
--
R
R
G
K
A
RADGGVGRK
T
-
T
G
I
T
-------
K
R
V
Q
R
A
N
---
L
H
K
K
A
I
R
E
--
N
G
---
Q
V
K
T
-
V
W
L
S
A
N
A
------
L
R
T
L
--
S
K
G
P
-
Y
K
G
I
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
56.36
35%
-18
- C8 -
4WCE
-
RL28_STAA8
U:
[10-55]
-------------------------------------------
R
K
A
S
T
G
N
R
R
S
--
H
-------------
A
-
L
N
S
T
-------
K
R
R
W
N
A
N
---
L
Q
K
V
R
I
L
V
D
G
K
P
---
K
--
K
-
V
W
V
S
A
R
A
------
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
55.94
17%
-32
- C6 -
4PW2
1
?
A:
[72-585]
RY
E
E
I
D
C
L
I
ND
D
A
T
I
K
G
R
R
E
GS
E
V
Y
M
P
F
S
W
M
E
K
Y
F
----
E
V
Y
G
K
V
V
Q
Y
D
G
Y
D
R
--
F
-------------
E
-
F
S
H
S
Y
S
K
V
Y
A
Q
R
E
Q
Y
H
P
N
GVF
M
S
F
E
G
Y
N
V
E
V
R
D
---
R
-
V
K
-
C
I
S
G
V
E
G
------
V
P
L
S
--
T
Q
W
G
-
P
Q
G
Y
F
Y
A
I
Q
I
A
Q
Y
G
L
S
H
Y
S
K
N
--
L
T
E
R
-
P
P
H
V
E
V
Y
DTAEERSA
W
T
V
P
KG
C
S
L
T
R
V
Y
D
KTRA
T
S
V
R
E
F
S
A
P
ENSE
G
V
S
L
P
L
GNTKDF
I
I
S
F
D
L
K
F
T
S
N
G
S
V
S
V
I
L
E
T
TEK
G
P
P
F
V
I
H
YVTTTQL
I
L
L
K
DR
D
I
T
Y
G
IGPRT
T
W
T
T
V
T
R
D
L
L
T
D
L
R
K
G
I
G
LSNTKAVKATKTMPRRVV
K
L
V
V
H
G
T
G
T
I
D
N
I
T
I
S
TTS
H
M
A
A
F
Y
A
A
S
D
W
L
V
R
N
QDERGGWPIM
V
T
R
K
LGEGFRALEPGWYS
A
M
A
Q
G
Q
A
M
S
T
L
V
R
A
Y
L
M
TKDD
R
Y
L
K
A
A
L
R
A
T
GPFKLPSEQHGV
K
A
V
F
MNK
Y
D
W
Y
E
EYPTIPSSFV
L
N
G
F
I
Y
S
L
I
G
L
F
D
L
A
Q
T
A
GEKLG
R
D
A
G
Q
L
Y
S
K
G
M
E
S
L
K
V
M
LPLYDTGSGTIYDL
R
H
F
I
L
GTAPNLAR
W
D
Y
H
T
T
H
I
N
Q
L
Q
L
L
G
T
I
D
NS
P
I
F
R
D
S
V
K
R
W
K
S
Y
L
K
GGRAKHN
8
PsiBlast_PDB
54.56
40%
4
- C7 -
4UY8
-
RL28_ECOLI
X:
[4-62]
----------------------------------
C
----
Q
V
T
G
K
R
P
V
T
G
N
N
R
S
--
H
-------------
A
-
L
N
A
T
-------
K
R
R
F
L
P
N
---
L
H
S
H
R
F
W
V
E
S
E
K
---
R
F
V
T
-
L
R
V
S
A
K
G
------
M
R
V
I
--
D
K
K
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
53.74
35%
0
- C8 -
4WFA
-
RL28_STAA8
U:
[12-55]
---------------------------------------------
A
S
T
G
N
R
R
S
--
H
-------------
A
-
L
N
S
T
-------
K
R
R
W
N
A
N
---
L
Q
K
V
R
I
L
V
D
G
K
P
---
K
--
K
-
V
W
V
S
A
R
A
------
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
53.72
33%
-11
- C8 -
4WFA
-
RL28_STAA8
U:
[12-55]
---------------------------------------------
A
S
T
G
N
R
R
S
--
H
-------------
A
-
L
N
S
T
-------
K
R
R
W
N
A
N
---
L
Q
K
V
R
I
L
V
--
D
G
---
K
P
K
K
-
V
W
V
S
A
R
A
------
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
53.33
40%
3
- C7 -
3J5L
-
RL28_ECOLI
X:
[4-62]
----------------------------------
C
----
Q
V
T
G
K
R
P
V
T
G
N
N
R
S
--
H
-------------
A
-
L
N
A
T
-------
K
R
R
F
L
P
N
---
L
H
S
H
R
F
W
V
E
S
E
K
---
R
F
V
T
-
L
R
V
S
A
K
G
------
M
R
V
I
--
D
K
K
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
53.14
41%
32
- C- -
5ADY
-
RL27_ECOLI (first)
X:
[1-62]
-------------------------------
S
R
V
C
----
Q
V
T
G
K
R
P
V
T
G
N
N
R
S
--
H
-------------
A
-
L
N
A
T
-------
K
R
R
F
L
P
N
---
L
H
S
H
R
F
W
V
E
S
E
K
---
R
F
V
T
-
L
R
V
S
A
K
G
------
M
R
V
I
--
D
K
K
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
50.33
17%
-24
- C5 -
4KV2
-
?
A:
[20-109]
-----------------------------M
A
T
T
R
V
----
T
I
L
T
--------------------------
G
-
R
R
M
T
-------
D
L
V
L
P
A
A
---
V
P
M
E
T
Y
-
I
D
D
T
V
---
A
V
L
S
-
E
V
L
E
D
T
P
------
A
D
V
L
GG
F
D
F
T
-
A
Q
G
V
W
A
F
A
R
-
P
G
S
P
P
L
K
L
D
Q
S
--
L
D
D
A
G
V
V
D
G
S
L
L
T
L
V
S------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------