@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0126: (2015-12-22 )
MPTRVLRGLVAALPLFLAACSDSAPSSEEIARLLAERGFDKPACASSTLFKTFPVTLSDSFSGPGPAKGNAAVYDALVGVGLLRRDGDSYDLTPAGREDYKPESKAFCYSSGFDVSVRSVDPAKPDDYGPAVEKGWLVTVEVKPREVKDWAKNPEVLKQASLTTLQQITQPQVGQVSLVKPRGEEGYKLVNTRFSPRQGFHFNQAW
Atome Classification :
(20 SA)
----------------------------------.........10........-20.---...---.-----...30.----....--...40-.----......-.50-----........60--.........70----.....-...---80......---------.-------.---------------90........100........110........120.------------........130--.....-----------------....140--........150---.-.......160......----.170.......180.---..---....190-----....-...200....--------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------M
P
T
R
V
L
R
G
L
V
A
A
L
P
L
F
L
A
A-CSD---SAP---
S
-----
S
E
E
I
A
R
----
L
L
A
E--RGFDK-P----ACASST-L
F
K
-----TF
P
V
T
LSDS---FSGPGPAKG
N
A
----
A
V
Y
D
A
-
L
V
G
---
V
G
L
LRRDG---------D-------S---------------YDLTPAGREDY-KPESK
A
F
C
YS-SGF
D
V
S
V
R
SV--D------------PAKPDDYGP----AVEKG-----------------
W
L
V
T
V
E
---VK
P
R
E
V
K
D
WA----K-
N
P
E
V
L
K
Q
A
S
L
T
T
L
Q
Q
I----TQPQVG
Q
V
S
L
VKPRG---EE---G
Y
K
L
VNT-----RFSP-RQGFHFNQAW--------------------------
25
Fugue
82.05
23%
-44
- C2 -
1ZEL
11
?
A:
[2-297]
------------------------------A
M
V
V
S
P
A
G
A
D
R
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I
P
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W
A
S
R
V
V
S
G
-
L
A
R
---
D
R
P
VVV
T
-----
K
E
D
L
T
Q
----
R
L
T
E
--
A
G
C
G
R
D
P
----
D
S
A
I
R
E
-
L
R
R
I
GW
L
V
Q
L
P
V
K
G
T
W
A
---
F
I
P
P
G
E
A
--------
A
I
S
D
P
Y
L
P
L
---
R
S
W
L
A
R
D
Q
---------
N
-------
A
GFMLAG
A
S
A
A
W
H
L
GY
L
D
R
Q
P
D
G
R
I
P
I
W
L
P
P
A
K
R
L
P
D
G
-
L
A
S
Y
V
S
V
V
R
I
PW
N
------------
A
A
D
T
A
L
L
A
P
R
P
A
L
L
V
R
R
R
LDLVAWATG
L
P
A
L
G
P
E
A
L
L
V
Q
I
A
---
T
R
P
A
S
F
G
P
W
A
DLVP
H
-
L
D
D
L
V
A
D
C
S
D
E
R
L
E
R
L
L
SGR
P
T
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A
W
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A
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Y
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D
S
G
GE
P
A
R
---
G
Q
A
L
L
A
K
-----
R
H
T
E
V
M
P
V
T
R
F
T
T
A
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SG
E
S
V
W
A
PEYQLVDEL
V
V
P
L
L
R
V
I
G
K
32
Fugue
62.89
16%
-67
- C3 -
2LSE
-
?
A:
[1-101]
-----------------------------------
M
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R
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E
-
V
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---
G
A
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DE-
A
-----
R
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----
L
A
K
D
--
V
K
D
E
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-
E
----
E
G
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N
-
M
I
E
-----
K
F
R
D
E
M
E
Q
M
---
Y
K
D
A
P
----
N
A
----
V
M
E
Q
L
-
L
E
E
---
I
E
K
L
L
K
K
A
---------
G
-------
S
---------------
L
V
P
R
G
S
Y
L
E
H
H
-
H
H
H
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
55.87
21%
-65
- C1 -
1AN7
-
RS8_THETH
A:
[3-138]
------------------------------------
T
D
P
I
A
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M
L
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I
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N
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-
Y
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---
S
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---
V
PAS
R
F
K
E
E
I
L
R
----
I
L
A
R
--
E
G
F
I
K
-
G
----
Y
E
R
V
D
V
D
G
K
P
-----
Y
L
R
V
Y
L
K
Y
G
---
P
R
R
Q
G
P
D
P
R
P
E
----
Q
V
----------
I
H
H
I
R
R
-------------------------------------
I
S
K
P
G
R
R
V
Y
-
V
G
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K
E
I
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R
V
R
-
R
G
L
G
I
A
I
L
S
T
--
S
------------
K
-------------------------------------------------------------------
G
V
L
T
D
R
E
A
----
R
K
L
G
V
G
------------------------------------
G
E
L
I
C
E
V
W
--------------------------
26
Fugue
50.92
17%
-35
- C2 -
2KKU
-
?
A:
[1-139]
----------------------------------
M
S
K
--
I
V
G
V
T
Y
P
I
P
------------------------
K
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F
M
D
R
----
F
F
K
K
G
K
D
V
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V
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-
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----
A
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K
E
-
L
K
P
-----
G
M
K
F
V
F
Y
Q
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---
H
E
D
T
G
-
F
V
G
E
A
----
R
I
K
R
V
-
V
L
S
EN
P
M
Q
F
F
E
T
F
G
---------
D
-------
R
---------------
V
F
L
T
K
D
E
L
K
E
Y
-
M
K
S
Q
E
R
W
--------------------------------
G
R
R
R
E
S
----
K
K
K
K
L
-----------------
W
M
A
I
E
L
---
E
D
-----------------------
V
K
K
Y
D
K
P
----
I
K
P
K
-------------------------------
R
L
V
P
-
V
G
G
Q
Y
L
R
E
----------------------------
13
HHSearch
47.64
22%
-20
- C4 -
1R7J
-
?
A:
[34-70]
------------------------------------------------------------------------------------------------------------------------------------
Y
A
L
T
G
----
R
Y
I
K
M
-
L
M
D
---
L
E
I
I
R
Q
E
G
---------
K
-------
Q
---------------
Y
M
L
T
K
K
G
E
E
L
L
-
E
D
I
R
K
F
N
E
M
R
-
K
N
M
D
Q
L
K
E
K
I
--
N
------------
S
V
L
S
--------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
46.26
30%
-53
- C4 -
3O2S
1
SSU72_HUMAN
B:
[25-96]
-----------------------------------------------
P
L
R
V
A
V
V
C
S
S
---
N
Q
N
---
R
-----
S
M
E
A
H
N
----
I
L
S
K
--
R
G
F
S
V
-
R
----
S
F
G
T
G
T
-
H
V
K
-----------------
L
P
G
P
A
P
D
K
P
N
V
Y
D
FK
T
T
Y
D
Q
-
M
Y
N
----
D
L
L
R
K
D
K
---------
E
-------
L
---------------
Y
T
Q
N
G
I
L
H
M
L
D
-
R
N
K
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P
R
P
E
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R
F
Q
N
C
K
D
L
F
D
--
L
------------
I
L
T
C
E
E
R
V
Y
----
D
Q
V
V
E
-----------------
D
L
N
S
R
E
---
Q
E
T
C
Q
P
V
H
V
V
----
N
-
V
D
I
Q
D
N
H
E
E
A
T
L
G
A
F
L
----
I
C
E
L
C
Q
C
I
Q
H
T
E
D
M
E
---
N
E
---
I
D
E
L
L
Q
E
-----
F
E
E
K
-
S
G
R
T
F
L
H
T
V
C
--------------------------
8
HHSearch
45.84
19%
-42
- C4 -
1YG2
-
?
A:
[38-82]
-------------------------------------------------------------------------------------------------------------------------------------
Q
Q
V
Y
----
R
E
L
N
K
-
M
G
E
---
Q
G
L
V
T
C
V
L
E----------------
V
---------------
Y
S
I
T
Q
A
G
R
S
A
L
-
G
E
W
F
D
Q
P
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A
H
-
P
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R
D
E
F
S
A
K
--
L
------------
M
A
C
S
V
Q
S
A
E
----
P
Y
R
L
Q
-----------------
L
A
E
L
V
E
---
E
S
R
K
L
V
A
H
Y
Q
----
E
-
I
E
A
A
Y
Y
A
N
P
A
V
L
D
K
Q
Q
----
R
L
E
R
L
T
L
R
R
N
L
L
V
R
Q
---
A
W
---
I
Q
W
A
D
E
V
-----
L
A
E
L
-
N
A
M
A
--------------------------------
29
Fugue
44.16
12%
-14
- C2 -
1B63
4
MUTL_ECOLI
A:
[3-218]
----------------------------------
M
P
I
Q
V
L
P
----
P
Q
L
A
N
Q
I
A
-
A
G
E
---
V
V
E
---
R
-----
P
A
S
V
V
K
----
E
L
V
E
--
N
S
L
D
A
-
G
----
A
T
R
I
D
I
-
D
I
E
RGG--
A
K
L
I
R
I
R
D
N
---
G
C
G
I
K
K
D
E
L
A
L
----
A
L
A
R
---------
H
A
T
S
K
I
A
---------
S
-------
L
---------------
D
D
L
E
A
I
I
S
L
G
F
-
R
G
E
A
L
A
S
I
S
S
V
S
R
L
T
L
T
S
R
T
A
--
E
QQ
E
A
W
Q
A
Y
A
E
G
R
D
M
N
V
T
V
K
P
A
----
A
H
P
V
G
-----------------
T
T
L
E
V
L
DLF
Y
N
T
P
A
R
R
K
F
L
----
R
-
T
E
K
T
E
F
N
H
I
D
E
I
I
R
R
I
----
A
L
A
R
F
D
V
T
I
N
L
S
H
N
G
---
K
I
---
V
R
Q
Y
R
A
V
-----
P
E
G
G
-
Q
K
E
R
R
L
G
A
I
C
--------------------------
4
HHSearch
42.93
19%
-6
- C4 -
2CO5
-
?
A:
[44-84]
------------------------------------------------------------------------------------------------------------------------------------
D
G
V
L
Y
----
P
L
I
D
S
-
L
I
D
---
D
K
I
L
R
E
E
E
A
PD
G
-----
K
-------
V
---------------
L
F
L
T
E
K
G
M
K
E
F
-
E
E
L
H
E
F
F
K
K
I
-
V
C
H
H
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
41.18
22%
12
- C4 -
3DF8
-
?
A:
[57-96]
------------------------------------------------------------------------------------------------------------------------------------
S
T
I
L
S
----
R
R
I
K
D
-
L
I
D
---
S
G
L
V
E
R
R
S
G
Q
I
------
T
-------
T
---------------
Y
A
L
T
E
K
G
M
N
V
R
-
N
S
L
M
P
L
L
Q
Y
I
-
S
V
L
D
R
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
40.89
22%
-10
- C4 -
2ESH
1
?
A:
[49-93]
------------------------------------------------------------------------------------------------------------------------------------
M
G
N
I
Y
----
R
V
L
A
D
-
L
E
E
---
S
G
F
L
S
T
E
W
DTTVSP
P
R
-
K
-------
I
---------------
Y
R
I
T
P
Q
G
K
L
Y
L
-
R
E
I
L
R
S
L
E
D
M
-
K
R
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I
E
T
L
E
E
R
--
I
------------
K
R
V
L
Q
E
------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
40.28
22%
15
- C4 -
1XMA
1
?
A:
[76-121]
------------------------------------------------------------------------------------------------------------------------------------
E
T
T
L
Y
----
S
A
F
A
R
-
L
E
K
---
N
G
Y
I
K
S
Y
Y
G
E
ETK
R
R
--
T
-------
Y
---------------
Y
R
I
T
P
E
G
I
K
Y
Y
-
K
Q
K
C
E
E
W
E
L
T
-
K
K
V
I
N
K
F
V
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
40.24
22%
-1
* C4 *
3BJ6
-
?
A:
[68-111]
------------------------------------------------------------------------------------------------------------------------------------
R
Q
Y
I
S
----
R
I
L
Q
E
-
V
Q
R
---
A
G
L
I
E
R
R
T
NPEHARS--
H
-------
R
---------------
Y
W
L
T
P
R
G
E
A
I
I
-
T
A
I
R
A
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E
M
A
K
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L
A
L
F
S
E
G
F
S
S
--
V
------------
E
L
T
A
Y
H
K
V
Q
----
L
A
L
T
R
-----------------
F
F
A
D
L
A
---
K
E
A
-------------------------------------------------------------------------------------------------------------
28
Fugue
40.17
17%
-4
- C2 -
4LXU
13
?
A:
[1-273]
GHMIK
I
C
I
A
G
K
N
N
I
A
V
N
S
L
Q
F
I
L
K
NYFEADQ
I
V
V
I
P
N
K
N
D
K
G
I
D
S
W
Q
K
S
L
L
K
F
-
A
L
D
N
N
I
K
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---
T
-----
L
D
E
I
Y
N
IEQ
I
I
F
F
S
--
L
E
F
D
Q
-
I
I
K
IE
N
F
K
S
D
R
-
L
F
N
-----
I
H
F
S
A
L
P
K
Y
KGV
F
T
S
I
T
P
I
L
N
N
--------
E
L
-
E
S
G
---
V
T
L
H
R
I
D
N
---------
G
IDTGNII
D
---------------
Q
H
C
F
P
I
D
I
N
D
T
-
A
R
D
L
Y
F
N
Y
L
K
-
Y
G
E
S
I
F
K
K
N
I
--
Q
------------
T
I
I
N
N
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Y
K
D
----
L
K
Q
T
N
IN
S
S
-------------
Y
F
S
R
K
D
---
I
N
L
V
H
K
I
N
F
K
----
K
T
S
F
E
I
H
N
Q
I
R
A
F
I
F
Q
E
Y
----
Q
L
P
I
I
N
N
S
K
I
I
K
S
I
L
---
A
N
EFI
G
Y
N
V
F
E
E
F
EN
Y
F
I
I
S
G
-
I
D
G
F
K
I
I
A
Q
K
LNK-----------------------
16
HHSearch
39.97
24%
-15
- C4 -
2JTV
-
?
A:
[24-62]
------------------------------------------------------------------------------------------------------------------------------------
G
S
R
E
Q
----
K
P
F
E
D
-
L
V
D
---
L
G
W
L
K
R
S
S
VDSR
A
----
T
-------
H
---------------
Y
Q
I
T
E
R
G
T
S
A
A
-
L
R
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
39.08
14%
-9
- C4 -
3L9F
-
?
A:
[71-116]
------------------------------------------------------------------------------------------------------------------------------------
Y
G
M
I
Y
----
P
T
L
R
K
-
L
E
K
---
D
G
K
I
T
K
E
V
V
I
Q
D
GR
P
N
K
N
-------
I
---------------
Y
A
I
T
E
S
G
K
K
E
L
-
A
S
Y
L
Q
S
D
V
N
D
-
E
I
F
K
S
D
F
L
M
R
--
L
------------
F
F
G
N
S
L
N
D
D
----
D
L
E
Q
L
-----------------
I
R
E
E
I
E
---
R
K
E
E
K
I
K
R
L
S
----
E
-
N
L
E
I
W
K
K
K
G
E
L
T
P
T
Q
E
----
I
T
I
K
Y
G
L
A
Q
Y
K
S
T
K
K
---
V
L
---
E
E
E
L
A
K
-----------------------------------------------
14
HHSearch
35.62
14%
4
- C4 -
1TBX
-
F93_SSV1
A:
[41-80]
-------------------------------------------------------------------------------------------------------------------------------------
A
T
F
Y
----
D
A
K
K
F
-
L
I
Q
---
E
G
F
V
K
E
R
Q
ERG
E
-----
K
-------
R
---------------
L
Y
L
T
E
K
G
K
L
F
A
-
I
S
L
K
T
A
I
E
T
Y
-
K
Q
I
K
K
R
H
H
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
35.44
16%
15
- C4 -
3BDD
2
?
A:
[59-102]
------------------------------------------------------------------------------------------------------------------------------------
R
A
A
V
T
----
R
H
L
K
L
-
L
E
E
---
S
G
Y
I
I
R
K
R
NPDNQR
E
--
V
-------
L
---------------
V
W
P
T
E
Q
A
R
E
A
L
-
I
T
N
P
S
A
H
H
Q
A
-
I
K
T
S
M
N
Q
I
L
T
--
V
------------
E
E
S
E
Q
F
L
A
T
----
L
D
K
L
L
-----------------
I
G
L
Q
N
L
---
P
I
--------------------------------------------------------------------------------------------------------------
30
Fugue
35.38
26%
-14
* C2 *
2PL9
-
CHEZ_SALTY
D:
[1-19]
-------------------------------------------------------
A
G
---
V
V
A
---
S
-----
Q
D
Q
V
D
D
----
L
L
D
S
--
L
G
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
34.96
17%
-18
- C4 -
1BJA
1
MOTA_BPT4
A:
[45-80]
------------------------------------------------------------------------------------------------------------------------------------
N
A
V
V
N
----
S
N
I
G
V
-
L
I
K
---
K
G
L
V
E
K
S
G
---------
D
-------
G
---------------
L
I
I
T
G
E
A
Q
D
I
I
-
S
N
A
A
T
L
Y
A
Q
E
-
N
A
P
E
L
L
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------