@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0805: (2016-01-20 )
MSIQHRTQDAIRTLTAAFAPFDCLIQATRKGNFSFTIVDQHGVACHSERLYPEQYDDSGKMEEVINRVRKKTLAA
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.-......-.30........40..-.-..----...50..-...-----.--...60........70....--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSI
Q
H
R
T
Q
D
A
I
R
T
L
T
A
A
F
A
P
F
D
-
C
L
I
Q
A
T-RKG
N
F
S
F
T
I
VDQHGV-A-CH----SERL-YP-EQY-----D--DSG
K
M
E
E
V
I
N
R
V
R
K
K
TLAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
74.72
24%
-55
* C4 *
3RFU
3
?
A:
[74-736]
VSP
E
Y
L
D
M
R
R
R
F
W
I
A
L
M
L
T
I
P
V
V
I
L
E
M
G
GHGLKHFISGNG
S
S
W
I
Q
L
L
L
A
T
P
V
V
LWGG
W
P
F
F
K
R
G
W
Q
S
L
K
TGQLN
M
F
T
L
I
A
M
G
I
G
V
A
W
I
Y
S
M
V
A
V
L
WPGVFPHAFRSQEGVVAVY
F
E
A
A
A
V
I
T
T
L
V
L
L
G
Q
V
L
E
L
K
A
R
EQTGS
A
I
R
A
L
L
KLVPE
S
A
H
R
I
K
E
DGS
E
E
E
V
S
LDNVAVG
D
L
L
R
V
R
P
GEKIP
V
D
G
E
V
Q
E
G
R
S
F
V
D
E
SMVTGEP
I
P
V
A
K
E
AS
A
K
V
I
G
ATINQT
G
S
F
V
M
K
A
LHVGSDT
M
L
A
R
I
V
Q
M
V
S
D
A
Q
R
SRA
P
I
Q
R
L
A
D
T
V
S
G
W
F
V
P
A
V
I
L
V
A
V
L
S
F
I
V
W
A
L
LGPQPALS
Y
G
L
I
A
A
V
S
V
L
I
I
A
CPCALGLA
T
P
M
S
I
M
V
G
V
G
K
G
A
Q
S
GVLIKN
A
E
A
L
E
R
M
E
K
VN
T
L
V
V
D
K
T
GTLTEG
H
P
K
L
T
R
I
V
T
D
DFV
E
D
N
A
L
A
L
A
A
A
L
E
H
QSEH
P
L
A
N
A
I
V
H
A
A
K
E
K
G
L
S
L
G
S
V
E
A
F
-------
E
A
-
P
T
G
K
G
V
V
G
Q
V
D
G
H
H
V
-
A
-
I
G
----
N
A
R
L
-
M
Q
-
E
H
G
-----
G
--
D
N
A
P
L
F
E
K
A
D
E
L
R
G
K
G
A
S
V
M
F
M
A
V
DGKTV
A
L
L
V
V
E
DPIKSS
T
P
E
T
I
L
E
L
Q
Q
S
G
I
E
I
V
M
L
T
G
D
S
K
R
T
A
E
A
V
A
G
T
L
GIK
K
V
V
A
EIM
P
E
D
K
S
R
I
V
S
E
L
K
D
K
GLI
V
A
M
A
G
D
G
VND
A
P
A
L
A
K
AD
I
G
I
A
M
GTGTD
V
A
I
E
S
A
GVTLLHGDLRG
I
A
K
A
R
R
L
S
E
S
T
M
S
N
I
R
Q
N
L
F
F
A
F
I
Y
N
V
L
G
V
P
L
A
A
GVLYPLTGLLLS
P
M
I
A
A
A
A
M
A
L
S
S
V
S
V
I
I
N
A
L
R
LKRVTL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
71.75
10%
-97
- C3 -
2ARZ
5
?
A:
[5-242]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
V
E
A
A
K
N
A
R
E
L
L
L
K
E
Y
R
A
V
L
S
T
HSKKWPG
F
P
F
G
S
V
V
P
Y
C
L
D
AEG
R
P
L
I
L
I
S
RIA
Q
H
T
H
N
L
Q
A
DP
R
C
S
M
L
V
G
ERGAEDIQA
V
G
R
L
T
L
L
A
E
A
R
Q
L
AEEE
V
A
A
A
A
E
R
Y
Y
R
Y
F
PESADYHRVHD
F
D
F
W
V
L
Q
P
V
Q
W
R
F
I
G
GFG
A
I
H
W
L
A
AER
V
P
L
A
N
PFAG
E
A
E
R
G
M
V
E
H
M
N
S
D
H
A
A
A
I
A
H
Y
V
E
L
A
G
L
--------
P
-
A
H
A
A
A
Q
L
A
G
I
D
T
E
G
F
-
H
-
L
R
IGQ
G
L
H
W
L
P
F
P
-
A
A
C
-----
G
--
N
P
G
A
V
R
Q
A
L
V
Q
L
A
R
A
E
R
W
P
TV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
70.84
20%
-84
- C3 -
2K8E
-
YEGP_ECOLI
A:
[21-66]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
L
S
K
S
-
S
D
N
Q
F
R
F
V
L
K
A
G
N
G
E
-
T
-
I
L
----
T
-----
S
-
E
L
Y
-----
T
--
S
K
T
S
A
E
K
G
I
A
S
V
R
S
N
S
P
Q
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
70.39
23%
-43
- C3 -
4U5B
3
GRIA2_RAT
A:
[1-804]
-----------------------------------------------------------------------------------------------------------------------------N
S
I
Q
I
G
G
L
F
P
RGAD
Q
E
Y
S
A
F
R
V
G
M
V
Q
F
STSE
F
R
L
T
P
H
I
D
N
L
EVAN
S
F
A
V
T
N
A
F
C
S
Q
F
S
R
GVY
A
I
F
G
F
Y
D
KKS
V
N
T
I
T
S
F
C
G
T
L
H
V
S
F
I
T
PSFPTDGTHPFVIQMRPDL
K
G
A
L
L
S
L
I
E
Y
Y
QWD
K
F
A
Y
L
Y
D
SDRGL
S
T
L
Q
A
V
L
D
S
A
A
E
K
K
W
Q
V
T
A
I
N
VGNINNDKKDE
T
Y
R
S
L
F
Q
D
L
E
L
K
GER
R
V
I
L
DCE
R
D
K
V
N
D
I
V
D
Q
V
I
T
I
GKHVKG
Y
H
Y
I
I
A
N
LGFTDGDLLKIQFGG
A
E
V
S
G
F
Q
IVDYDD
S
L
V
S
K
F
I
E
R
W
S
T
LEEKEYPGAHTATI
K
Y
T
S
A
L
T
Y
D
A
V
Q
V
M
T
E
A
F
R
N
L
R
K
Q
R
I
E
I
S
-
R
R
G
N
A
G
----------
D
-
C
L
----
A
N
P
A
-
V
P
---
W
-----
G
--
Q
G
V
E
I
E
R
A
L
K
Q
V
Q
V
E
G
L
S
G
N
I
K
F
D
QNGKRIN
Y
T
I
N
I
M
E
L
K
TNGPRKI
G
Y
W
S
EVDK
M
V
V
T
L
TEEQ
K
T
V
V
V
T
T
I
L
E
S
PY
V
M
M
K
KNHEMLEGNERYEG
Y
C
V
D
L
A
A
E
I
A
K
H
C
G
F
K
Y
K
L
T
I
V
GDGKY
G
A
R
D
ADTKIWDG
M
V
G
E
L
V
Y
GKAD
I
A
I
A
P
L
T
I
T
L
V
R
E
E
V
I
D
F
S
KPF
M
S
L
G
I
S
I
M
I
K
K
P
Q
KSKPGVFSFLDPLA
Y
E
I
W
M
A
I
V
F
A
Y
I
L
V
S
V
V
L
F
LS
A
R
I
V
A
G
V
W
W
F
F
T
L
I
I
I
S
S
Y
T
A
N
L
A
T
F
L
T
V
E
R
MVSPIES
A
E
D
L
S
K
Q
TE
I
A
Y
G
T
L
DSG
S
T
K
E
F
F
R
R
SKIA
V
F
D
K
M
W
T
Y
M
R
S
AEPSVFVRT
T
A
E
G
V
A
R
V
R
K
S
K
GK
Y
A
Y
L
L
E
S
T
M
N
E
Y
I
E
Q
RKPCD
T
M
K
V
G
GNL
D
S
K
G
Y
G
I
A
T
P
KGSSL
G
T
P
V
N
L
A
V
L
K
L
S
E
Q
G
V
L
D
K
L
K
N
K
W
WYDKGECGASALSLSNV
A
G
V
F
Y
I
L
V
G
G
L
G
L
A
M
L
V
A
L
I
E
F
6
HHSearch
52.11
17%
-33
- C3 -
2K7I
-
Y232_AGRFC
A:
[9-49]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
K
A
G
E
Y
R
F
R
F
K
A
S
N
G
E
-
T
-
M
F
----
S
-----
S
-
E
G
Y
-----
K
--
A
K
A
S
A
I
H
A
I
E
S
I
K
R
N
S
A
G
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
50.58
13%
-58
- C3 -
1YBX
2
Y2143_CLOTH
A:
[55-113]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
D
M
E
R
V
Q
E
E
L
K
E
K
T
---
V
E
A
S
A
G
G
G
A
V
T
V
V
A
-
T
G
R
K
D
---
I
K
----
E
I
T
I
-
K
P
-
E
V
V
-----
D
PD
D
V
E
M
L
Q
D
L
I
L
A
A
V
N
E
A
L
R
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
49.74
17%
-2
- C3 -
2KW6
-
CDKA1_HUMAN
A:
[51-115]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MG
H
H
H
H
H
H
S
H
S
K
Y
A
E
L
L
A
I
I
E
E
L
G
-
K
E
I
R
P
T
-
Y
A
G
S
------------
K
-
S
A
----
M
E
R
L
-
K
R
-
G
I
I
-----
H
--
A
R
G
L
V
R
E
C
L
A
E
T
E
R
N
A
R
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
49.38
10%
-36
- C3 -
2K49
-
Y3888_SHEON
A:
[61-101]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
K
N
D
K
P
Y
F
N
L
K
A
A
N
H
Q
-
I
-
I
G
----
T
-----
S
-
Q
M
Y
-----
S
--
S
T
A
A
R
D
N
G
I
K
S
V
M
E
N
G
K
T
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
48.80
16%
-46
- C3 -
2GPI
-
?
A:
[13-68]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
W
D
V
-
Q
L
S
A
I
H
F
T
A
Q
Q
Q
G
M
V
I
D
-
C
Y
----
I
G
Q
K
-
V
L
-
E
H
L
A
AEKI
N
--
N
S
E
Q
A
L
S
L
F
E
Q
F
R
F
D
I
E
E
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
48.64
15%
-71
- C3 -
2LJK
-
MIEN1_HUMAN
A:
[46-99]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
V
K
E
Q
Y
P
G
I
E
-
I
E
S
R
L
G
-
G
T
G
A
F
E
I
E
I
---
N
G
Q
-
L
-
V
F
----
S
K
L
--
E
N
-
G
G
F
-----
P
--
Y
E
K
D
L
I
E
A
I
R
R
A
S
N
G
E
T
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
47.97
12%
-18
- C3 -
3BID
-
Y1088_NEIMB
A:
[9-49]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
G
E
Y
R
W
R
L
K
A
A
N
H
E
-
I
-
I
A
----
Q
-----
G
-
E
G
Y
-----
T
--
S
K
Q
N
C
Q
H
A
V
D
L
L
K
S
T
T
A
A
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
43.77
17%
-92
* C5 *
2WNV
-
C1QB_HUMAN
B:
[21-55]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
I
R
F
D
H
V
I
T
N
M
N
N
N
Y
E
P
R
S
-
G
K
F
T
C
K
-
V
P
G
L
Y
Y
F
T
Y
H
A
S
S
R
G
-
N
-
L
C
----
V
N
L
M
-
R
G
-
R
E
R
-----
A
--
Q
K
V
V
T
F
C
D
Y
A
Y
N
T
F
Q
V
T
T
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
41.43
18%
-47
- C3 -
1NEI
-
YOAG_ECOLI
A:
[2-40]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
A
T
Y
T
V
T
V
T
N
N
S
N
G
-
V
S
V
D
----
Y
E
T
E
-
T
P
-
M
T
L
-----
L
--
V
P
E
V
A
A
E
V
I
K
D
L
V
N
T
V
R
S
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
39.52
14%
-82
- C5 -
2WNV
1
C1QA_HUMAN
A:
[18-52]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
V
I
F
D
T
V
I
T
N
Q
E
E
P
Y
Q
N
H
S
-
G
R
F
V
C
T
-
V
P
G
Y
Y
Y
F
T
F
Q
V
L
S
Q
W
-
E
-
I
C
----
L
S
I
V
-
S
S
-
S
R
G
-----
Q
--
V
R
R
S
L
G
F
C
D
T
T
N
K
G
L
F
Q
V
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
37.59
36%
2
- C4 -
3RLO
3
A:
[117-152]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
S
F
V
N
G
V
F
E
V
H
K
K
-
N
-
V
R
----
G
E
F
T
-
Y
Y
-
E
I
Q
-----
D
--
N
T
G
K
M
E
V
V
V
H
G
R
L
T
T
I
N
C
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
37.34
9%
-80
- C5 -
2WNV
1
C1QC_HUMAN
C:
[22-55]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
I
R
F
N
A
V
L
T
N
P
Q
G
D
Y
D
T
S
T
-
G
K
F
T
C
K
-
V
P
G
L
Y
Y
F
V
Y
H
A
S
H
T
A
-
N
-
L
C
----
V
L
L
Y
-
R
S
-
G
V
K
-----
V
--
V
T
F
C
G
H
T
S
K
T
N
Q
V
N
S
G
G
V
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
36.94
36%
-14
- C4 -
3B6Y
-
IF16_HUMAN
A:
[117-152]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
S
F
V
N
G
V
F
E
V
H
K
K
-
N
-
V
R
----
G
E
F
T
-
Y
Y
-
E
I
Q
-----
D
--
N
T
G
K
M
E
V
V
V
H
G
R
L
T
T
I
N
C
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
36.85
13%
-33
- C3 -
3F42
2
Y035_HELPY
A:
[36-73]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
G
M
V
S
V
S
F
-
N
G
L
G
E
---
L
V
----
D
L
Q
I
-
D
D
-
S
L
L
-----
E
--
D
K
E
A
M
Q
I
Y
L
M
S
A
L
N
D
G
Y
K
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
36.75
36%
4
- C4 -
3RNU
-
IF16_HUMAN
A:
[117-152]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
S
F
V
N
G
V
F
E
V
H
K
K
-
N
-
V
R
----
G
E
F
T
-
Y
Y
-
E
I
Q
-----
D
--
N
T
G
K
M
E
V
V
V
H
G
R
L
T
T
I
N
C
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
34.01
13%
-4
- C3 -
3HRG
1
?
A:
[18-57]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
D
G
F
S
F
S
I
Y
N
P
I
N
D
-
N
S
Q
S
----
L
F
E
K
-
E
V
D
T
S
L
-----
S
--
L
T
A
N
L
K
N
V
F
H
E
S
D
F
L
S
Y
S
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------