@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA4950: (2016-03-03 )
MTPQPLADNLSPPDPARLAQSIKDWGRELGFQQVGISDVELGEHEAHLQRWLEAGYHGEMDYMAAHGSKRSRPAELVPGTLRVISLRMDYLPGDTRMAQVLATPEKAYVSRYALGRDYHKLIRKRLQQLAERIQAEVGPFGFRAFVDSAPVLEKAIAEQAGLGWIGKNTLVLNRKAGSYFFLGELFVDMPLPVDPAMDSEHCGRCSACLDICPTAAFVGPYRLDARRCISYLTIEYKGAIPLELRPLIGNRVFGCDDCQIVCPWNRFARPTGQGDFQPRHSLDNAELAELFLWSEEEFLGRTEGSPLRRAGYERWLRNLAVGLGNAPSTIPVLEALKARRGFPSELVREHVEWALRRHGET
Atome Classification :
(20 SA)
-------.........10--.........20........30........----------------40........50......-----------------..60........70..------......80........90...-------------.....--------100......--.110.......120....---...130.......140....------...150.......160.....-..170...-----....180.--......190...--...---.200....-----...210....--------..-.----------220-.------.....----...230.......240.......250....------...260........270.......280.......290.......300.......310.......320...-------....330.......340.......350.---......360-----------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------MTPQPLADNL---SPP
D
P
A
R
L
A
Q
S
I
K
D
W
G
R
ELGFQQVGISDV----------------ELG
E
H
E
A
H
L
Q
R
W
L
E
AGYH-----------------GE
M
D
Y
M
AAHGSKRSRP------AELVPG
T
L
R
V
I
S
L
R
M
DYLPGD-------------
T
R
M
A
Q
--------
V
LAT
P
E
K
A
Y
--
V
S
R
Y
ALG
R
D
Y
H
K
L
I
R
K
R
L
---
Q
Q
L
A
E
R
I
Q
A
EVGP
F
G
F
R
A
FV------DS
A
P
V
L
E
K
A
I
A
E
QAGLGWIGK-
N
T
L
V
L
NRK-----AG
S
Y
F
F
L
G
--
E
L
F
VDMPLPVDP--AM
D
---
S
E
HCG
R
C
S
-----
A
C
L
D
ICPTAA--------FV-G----------P---Y------RL
D
A
R
----
R
C
I
S
Y
L
T
I
E
YKGAIP
L
E
L
R
P
LIGNRVFGCD------D
C
Q
I
-
V
CPWNRFARPTGQGDFQPRHSL
D
N
A
E
L
A
E
L
F
LW
S
E
E
E
F
LGRTEGS
P
L
R
R
A
G
Y
E
R
W
L
R
N
L
A
V
GLGN-------AP
S
T
I
P
V
L
E
A
L
K
ARRGF
P
S
E
L
V
R
E
H
V
E
W
---
A
L
R
RHGET------------
44
Fugue
87.07
19%
-68
- C4 -
4LL8
-
A:
[99-536]
ERA
A
A
Q
S
S
L
I
Q
S
H
M
Q
S
L
---
A
A
N
K
P
S
R
L
S
D
E
V
K
S
M
K
Q
E
L
A
F
I
E
N
V
I
A
Q
A
N
K
P
K
L
V
N
V
I
R
R
E
SGN
P
D
L
L
E
L
L
M
D
L
N
S
Y
T
L
E
V
T
E
G
YLKKVNVTEVNGDNVL
G
P
I
H
V
I
T
T
V
V
S
S
L
V
R
N
GL
L
I
Q
S
S
K
F
I
S
K
V
L
L
T
V
E
S
I
V
M
S
L
P
K
D
ET
M
L
G
G
I
F
W
L
S
N
L
S
R
L
P
A
--------
F
A
A
N
Q
K
T
L
Y
--
E
A
N
G
G
D
E
K
D
--
K
L
T
L
I
Y
L
---
N
D
L
E
N
E
T
L
K
V
F
D
K
I
Y
S
T
W
L
V
------
K
---
F
M
K
H
A
S
A
H
I
E
I
F
D
M
V
L
N
-
E
K
L
F
K
N
S
G
-----
D
E
K
F
A
K
L
F
--
T
F
L
N
E
F
D
A
V
L
S
K
F
Q
V
V
D
---
S
M
H
T
K
I
F
N
-----
D
T
L
K
Y
L
N
V
M
L
--------
F
N
-
D
LITKSPALN
W
K
---
Y
------
G
Y
E
V
D
----
R
N
I
E
R
L
V
S
W
F
E
P
R
I
E
-
D
V
R
P
N
L
I
Q
I
I
Q
A
V
K
------
I
L
Q
L
K
I
S
N
L
N
E
F
K
L
L
-----
F
D
F
W
Y
A
L
N
P
A
Q
I
Q
A
I
L
L
K
Y
K
P
A
N
K
G
E
-
A
G
V
P
------
N
E
I
L
N
Y
L
A
N
V
I
K
R
-------
E
N
L
S
L
P
G
K
M
E
I
M
L
S
A
Q
F
D
S
--
A
K
N
H
L
R
Y
D
T
S
A
I
T
Q
N
S
N
T
E
G
L
A
T
V
S
K
I
I
KL
50
Fugue
59.81
13%
-25
- C4 -
2NSY
8
NADE_BACSU
A:
[1-271]
-------
S
M
Q
E
K
I
M
R
E
L
HVK
P
S
I
D
P
K
Q
E
I
E
D
R
V
N
F
L
K
Q
Y
-
V
K
K
T
G
A
K
G
F
----------------
V
L
G
-----
I
S
G
G
Q
D
S
T
L
A
-----------------
G
R
L
A
Q
L
A
V
E
S
I
R
E
E
G
------------
G
D
A
Q
F
I
A
V
R
L
--
P
H
G
T
-------------
Q
Q
D
E
D
--------
D
A
Q
L
A
L
K
F
I
--
K
P
D
K
S
W
K
F
D
I
K
S
T
V
S
A
F
S
---
D
Q
Y
Q
Q
E
T
G
D
Q
------
L
T
D
F
------
N
K
G
N
V
K
A
R
T
R
M
I
A
Q
Y
A
I
G
G
Q
E
-
G
L
L
V
L
G
T
D
-----
H
A
A
E
A
V
T
G
FF
T
K
Y
G
D
G
G
A
D
L
L
P
---------------------------------------
L
T
-
G
----------
L
---
T
------
K
R
Q
G
R
----
T
L
L
K
E
L
------
G
A
P
E
R
L
Y
L
----------------------------
K
E
P
T
A
D
L
L
D
E
K
P
Q
Q
S
D
E
T
E
L
G
I
S
Y
D
E
I
D
D
Y
L
E
G
K
E
V
S
A
K
V
S
E
A
L
E
K
R
Y
S
M
T
-------------------------
E
H
K
R
Q
V
P
A
S
M
F
D
D
W
W
K
------------------------
51
Fugue
56.42
16%
-28
- C4 -
3AYV
3
?
A:
[1-241]
----------
M
D
V
R
L
A
F
---
P
L
S
R
A
E
E
A
L
P
R
L
Q
A
L
G
L
G
A
E
V
Y
L
D
P
A
L
L
E
----------------
E
D
A
L
F
Q
S
L
R
R
R
F
S
G
K
-------------------------
L
S
V
H
L
P
F
W
N
L
--------
D
L
L
S
P
D
P
E
V
R
G
L
T
L
R
R
L
L
F
G
-------------
L
D
R
A
A
--------
E
L
G
A
D
R
A
V
F
--
H
S
G
I
P
H
G
R
T
-
P
E
E
A
L
E
R
A
---
L
P
L
A
E
A
L
---------------------
G
L
V
V
R
R
A
R
T
L
G
V
--------
R
L
L
L
E
N
S
H
-----
E
P
H
P
E
A
L
R
--
P
V
L
E
A
H
A
-----------------
G
E
L
G
-----
F
C
F
D
A
A
H
A
R
V
--------
F
---------------------------------------------------------------------------------------
S
R
T
P
D
P
G
P
W
L
A
L
A
P
E
H
L
H
L
N
D
T
D
G
V
Y
D
R
H
W
N
L
G
R
G
V
L
G
H
G
A
W
L
R
P
Y
L
----
D
-------
R
T
M
V
L
E
V
R
E
D
P
E
A
S
L
A
F
L
Q
A
L
A
G
E
---------------------------
1
PsiBlast_PDB
52.33
26%
-56
- C5 -
4RAS
5
?
A:
[466-572]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
L
G
E
V
S
R
I
G
D
T
L
L
N
P
F
-----
I
G
P
R
S
K
S
I
--
V
F
T
T
D
L
P
M
S
V
D
R
--
P
I
D
FG
L
Q
D
F
C
N
Q
C
R
-----
K
C
A
R
E
C
P
C
N
A
ISF
G
D
K
V
M
F
N
-
G
YE--------
I
---
W
------
K
A
D
V
E
----
K
C
T
K
Y
R
V
T
Q
M
K
G
S
--------------
A
C
G
------
R
C
M
K
-
M
C
P
W
N
R
---------------------------------------------------------------------------------------------------------------------
49
Fugue
50.97
10%
-42
- C2 -
1OFG
2
GFO_ZYMMO
A:
[1-381]
-------
A
T
L
P
A
G
A
S
Q
V
---
P
T
T
P
A
G
R
P
M
P
Y
A
I
R
P
M
P
E
D
R
R
F
G
Y
A
I
V
G
L
----------------
G
K
Y
A
L
N
Q
I
L
P
G
F
A
---
G
C
-----------------
Q
H
S
R
I
E
A
L
V
S
G
N
A
E
K
A
------
K
I
V
A
A
E
--
Y
G
V
D
P
R
K
I
Y
D
Y
S
N
-------------
F
D
K
I
A
KDPKID
A
V
Y
I
I
L
P
N
S
L
H
A
E
F
A
I
R
A
F
K
A
G
K
H
V
M
C
E
K
P
M
ATS
V
A
D
C
Q
R
M
I
D
A
A
K
A
A
N
K
K
L
M
I
GYRCHY
D
P
M
N
R
A
A
V
K
L
I
R
E
N
Q
L
G
K
L
G
M
-
V
T
T
D
N
S
D
V
M
D
QND
P
A
Q
Q
W
R
L
R
--
R
E
L
A
G
G
G
S
L
M
D
I
--
G
I
Y
---
G
L
N
G
T
R
Y
L
-----
L
G
E
E
P
I
E
V
R
A
--------
Y
T
-
Y
----------
S
---
D
------
P
N
D
E
R
FVEV
E
D
R
I
I
W
Q
M
R
F
R
S
G
A
L
S
H
G
A
S
S
Y
S
--
T
T
T
T
S
------
R
F
S
V
-
Q
G
D
-------
K
A
V
L
L
M
D
P
A
T
G
Y
Y
Q
N
L
I
S
V
Q
T
P
G
H
A
N
Q
S
M
M
P
Q
F
I
M
P
A
N
-
N
Q
F
S
A
Q
L
D
H
L
A
E
A
V
I
N
NKPVRSP
G
E
E
G
M
Q
D
V
R
L
I
Q
A
I
Y
E
A
A
R
T
G
R
P
V
N
T
D
W
---
G
Y
V
R
Q
G
G
Y
------------
21
HHSearch
50.74
28%
-62
- C5 -
2ZVS
2
YFHL_ECOLI
A:
[4-59]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
---
T
K
K
C
I
N
C
D
-----
M
C
E
P
E
C
P
N
E
A
--------
I
S
-
M
----------
G
---
D
HIY---
E
I
N
S
D
----
K
C
T
------------------------
E
C
V
GHYETP
T
C
Q
K
-
V
C
P
I
P
N
T
I
-------------------------------------------------------------------------------------------------------------------
10
PsiBlast_CBE
49.27
31%
-39
- C5 -
4UR3
3
?
D:
[279-374]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
A
V
E
A
G
L
G
Q
A
S
R
-
M
G
A
C
I
T
P
E
-----
F
G
P
N
V
R
L
T
--
K
V
F
T
N
M
P
L
V
P
D
K
--
P
I
D
FGV
T
E
F
C
E
T
C
K
-----
K
C
A
R
E
C
P
S
K
A
--------
I
T
E
G
----------
P
---
R
------
T
F
E
G
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_CBE
49.15
31%
-37
- C5 -
4UR3
3
?
F:
[279-377]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
A
V
E
A
G
L
G
Q
A
S
R
-
M
G
A
C
I
T
P
E
-----
F
G
P
N
V
R
L
T
--
K
V
F
T
N
M
P
L
V
P
D
K
--
P
I
D
FGV
T
E
F
C
E
T
C
K
-----
K
C
A
R
E
C
P
S
K
A
--------
I
T
E
G
----------
P
---
R
------
T
F
E
G
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_CBE
48.78
31%
-42
- C5 -
4UR3
3
?
B:
[279-374]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
A
V
E
A
G
L
G
Q
A
S
R
-
M
G
A
C
I
T
P
E
-----
F
G
P
N
V
R
L
T
--
K
V
F
T
N
M
P
L
V
P
D
K
--
P
I
D
FG
V
T
E
F
C
E
T
C
K
-----
K
C
A
R
E
C
P
S
K
A
--------
I
T
E
G
----------
P
---
R
------
T
F
E
G
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
48.31
31%
-46
- C5 -
4UR3
3
?
A:
[279-354]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
A
V
E
A
G
L
G
Q
A
S
R
-
M
G
A
C
I
T
P
E
-----
F
G
P
N
V
R
L
T
--
K
V
F
T
N
M
P
L
V
P
D
K
--
P
I
D
FG
V
T
E
F
C
E
T
C
K
-----
K
C
A
R
E
C
P
S
K
A
--------
I
T
E
G
----------
P
---
R
------
T
F
E
G
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
47.73
30%
-71
- C5 -
1RGV
2
?
A:
[4-59]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
---
N
D
D
C
T
A
C
D
-----
A
C
V
E
E
C
P
N
E
A
--------
I
T
-
P
----------
G
---
D
P
I
Y
---
V
I
D
P
T
----
K
C
S
------------------------
E
C
V
GAFDEP
Q
C
R
L
-
V
C
P
A
D
C
I
P
-------------------------------------------------------------------------------------------------------------------
34
HHSearch
47.69
28%
-64
* C5 *
1JNR
3
?
B:
[6-63]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
---
P
E
K
C
D
G
C
K
ALERT
A
C
E
Y
I
C
P
N
D
L
--------
M
T
-
L
----------
D
---
K
EKM
K
A
Y
N
R
E
P
D
----
M
C
W
------------------------
E
C
Y
------
S
C
V
K
-
M
C
P
Q
G
A
I
D
-------------------------------------------------------------------------------------------------------------------
31
HHSearch
47.69
28%
-70
- C5 -
3GYX
2
?
B:
[5-62]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
---
P
S
K
C
D
G
C
K
GGEKT
A
C
M
Y
I
C
P
N
D
L
--------
M
I
-
L
----------
D
---
P
EEM
K
A
F
N
Q
E
P
E
----
A
C
W
------------------------
E
C
Y
------
S
C
I
K
-
I
C
P
Q
G
A
I
T
-------------------------------------------------------------------------------------------------------------------
30
HHSearch
47.52
32%
-89
- C5 -
2FGO
2
?
A:
[4-59]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
---
T
D
D
C
I
N
C
D
-----
V
C
E
P
E
C
P
N
G
A
--------
I
S
-
Q
----------
G
EE
I
Y
------
V
I
D
P
N
----
L
C
T
------------------------
E
C
V
GHYDEP
Q
C
Q
Q
-
V
C
P
V
D
C
I
P
-------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
47.46
31%
-35
- C5 -
4UQU
6
?
A:
[279-373]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
A
V
E
A
G
L
G
Q
A
S
R
-
M
G
A
C
I
T
P
E
-----
F
G
P
N
V
R
L
T
--
K
V
F
T
N
M
P
L
V
P
D
K
--
P
I
D
FG
V
T
E
F
C
E
T
C
K
-----
K
C
A
R
E
C
P
S
K
A
--------
I
T
E
G
----------
P
---
R
------
T
F
E
G
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_CBE
47.45
31%
-41
- C5 -
4UR1
4
?
B:
[279-373]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
A
V
E
A
G
L
G
Q
A
S
R
-
M
G
A
C
I
T
P
E
-----
F
G
P
N
V
R
L
T
--
K
V
F
T
N
M
P
L
V
P
D
K
--
P
I
D
FG
V
T
E
F
C
E
T
C
K
-----
K
C
A
R
E
C
P
S
K
A
--------
I
T
E
G
----------
P
---
R
------
T
F
E
G
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_CBE
47.37
31%
-37
- C5 -
4UQU
3
?
B:
[279-374]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
A
V
E
A
G
L
G
Q
A
S
R
-
M
G
A
C
I
T
P
E
-----
F
G
P
N
V
R
L
T
--
K
V
F
T
N
M
P
L
V
P
D
K
--
P
I
D
FG
V
T
E
F
C
E
T
C
K
-----
K
C
A
R
E
C
P
S
K
A
--------
I
T
E
G
----------
P
---
R
------
T
F
E
G
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
47.34
31%
-36
- C5 -
4UR1
7
?
A:
[279-367]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
A
V
E
A
G
L
G
Q
A
S
R
-
M
G
A
C
I
T
P
E
-----
F
G
P
N
V
R
L
T
--
K
V
F
T
N
M
P
L
V
P
D
K
--
P
I
D
FG
V
T
E
F
C
E
T
C
K
-----
K
C
A
R
E
C
P
S
K
A
--------
I
T
E
G
----------
P
---
R
------
T
F
E
G
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
47.08
31%
-36
- C5 -
4UR2
6
?
A:
[279-371]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
A
V
E
A
G
L
G
Q
A
S
R
-
M
G
A
C
I
T
P
E
-----
F
G
P
N
V
R
L
T
--
K
V
F
T
N
M
P
L
V
P
D
K
--
P
I
D
FG
V
T
E
F
C
E
T
C
K
-----
K
C
A
R
E
C
P
S
K
A
--------
I
T
E
G
----------
P
---
R
------
T
F
E
G
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_CBE
47.05
31%
-44
- C5 -
4UR3
3
?
E:
[279-375]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
A
V
E
A
G
L
G
Q
A
S
R
-
M
G
A
C
I
T
P
E
-----
F
G
P
N
V
R
L
T
--
K
V
F
T
N
M
P
L
V
P
D
K
--
P
I
D
FGV
T
E
F
C
E
T
C
K
-----
K
C
A
R
E
C
P
S
K
A
--------
I
T
E
G
----------
P
---
R
------
T
F
E
G
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------