@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA5557: (2016-03-08 )
MAELTTLARPYAKAAFEYAQAHQQLADWSAALGVLAAVSQDDTVRQLLKEPQLTSSAKAQSLIDVCGDKLNAPAQNFVRTVAENKRLELLPTIAEMYEQLKAEQEKSVEVEVTSAFTLSKEQQDKLAKALSARLSREVRLHASEDASLIGGVIIRAGDLVIDGSVRGKLAKLAEALKS
Atome Classification :
(20 SA)
---------------------------------.........10-......-..20....------....30------.------.--......40...--....-.50---------.........--------60......--..70........------------------80..----------.-----.....90-----------------------------.--------------....-...100-------.------------.......-----------110...--....120-----.---......-.130.-..-....140.------..---------....150-.-...--...--160--.------..----...-...170-------......-------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------MA
E
L
T
T
L
A
R
P
Y
-
A
K
A
A
F
E
-
Y
A
Q
A
H
Q
Q
L
------
A
D
W
S
A
A
------
L
------
G
--
V
L
A
AVSQ
D
D
T
V
--
R
Q
L
L
-KE----------PQLT
S
S
A
K
A
--------
Q
S
L
I
D
V
CG--DKLNA
P
A
Q
N
F
V
R
------------------
T
V
A
E----------N-----K
R
L
E
L
L
P
-----------------------------
T
--------------
I
A
E
M
-
Y
E
Q
L
K
--------
A
------------EQEK
S
V
E
-----------
V
E
V
T
S
A
--
F
TL
S
K
E
------
Q
---
Q
D
K
L
A
K
-
A
L
S
A
R
-
L
S
-
R
E
V
R
L
HAS------ED---------
A
S
L
I
G
G
V
-
I
-
I
RA--G
D
L
--
V
----I------DG----SVR-
G
K
L
A
K
L
-------
A
E
A
LKS-------------------------------
1
PsiBlast_PDB
98.35
41%
-103
- C3 -
2A7U
1
ATPD_ECOLI
B:
[1-105]
----------------------------------
S
E
F
I
T
V
A
R
P
Y
-
A
K
A
A
F
D
-
F
A
V
E
H
Q
S
V
------
E
R
W
Q
D
M
------
L
------
A
--
F
A
A
E
V
T
K
N
E
Q
M
--
A
E
L
L
-
S
-----------
G
A
L
A
P
E
T
L
A
--------
E
S
F
I
A
V
C
G
--
E
Q
L
D
E
N
G
Q
N
L
I
R
------------------
V
M
A
E
----------
N
-----
G
R
L
N
A
L
P
-----------------------------
D
--------------
V
L
E
Q
-
F
I
H
L
R
--------
A
------------
V
S
E
A
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
97.55
41%
-87
- C3 -
1ABV
-
ATPD_ECOLI
A:
[1-105]
----------------------------------
S
E
F
I
T
V
A
R
P
Y
-
A
K
A
A
F
D
-
F
A
V
E
H
Q
S
V
------
E
R
W
Q
D
M
------
L
------
A
--
F
A
A
E
V
T
K
N
E
Q
M
--
A
E
L
L
-
S
-----------
G
A
L
A
P
E
T
L
A
--------
E
S
F
I
A
V
C
G
--
E
Q
L
D
E
N
G
Q
N
L
I
R
------------------
V
M
A
E
----------
N
-----
G
R
L
N
A
L
P
-----------------------------
D
--------------
V
L
E
Q
-
F
I
H
L
R
--------
A
------------
V
S
E
A
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
96.81
41%
-91
- C3 -
1ABV
-
ATPD_ECOLI
A:
[3-105]
------------------------------------
F
I
T
V
A
R
P
Y
-
A
K
A
A
F
D
-
F
A
V
E
H
Q
S
V
------
E
R
W
Q
D
M
------
L
------
A
--
F
A
A
E
V
T
K
N
E
Q
M
--
A
E
L
L
-
S
G
----------
A
L
A
P
-
E
T
L
A
--------
E
S
F
I
A
V
C
G
--
E
Q
L
D
E
N
G
Q
N
L
I
R
------------------
V
M
A
E
----------
N
-----
G
R
L
N
A
L
P
-----------------------------
D
--------------
V
L
E
Q
-
F
I
H
L
R
--------
A
------------
V
S
E
A
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
62.43
18%
-28
- C4 -
4D79
5
TCDA_ECOLI
A:
[3-268]
--------------------------VVIS
D
A
W
R
Q
R
F
G
G
T
A
R
L
Y
G
E
K
A
L
Q
L
-
F
A
D
A
H
I
C
V
V
G
IGGV
G
S
W
A
A
E
A
L
A
R
T
G
I
------
G
--
A
I
T
L
I
D
M
D
D
V
C
--
V
T
N
T
N
R
Q
----------
I
H
A
L
R
D
N
V
G
--------
L
A
K
A
E
V
M
A
--
E
R
I
R
Q
I
N
P
E
C
R
V
------------------
T
V
V
D
----------
D
F
V
T
PD
N
V
A
Q
Y
M
S
-----------------------------
V
GYS
Y
V
I
D
AIDS
V
R
P
K
A
A
L
-
I
A
Y
C
R
--------
R
N
KI
P
L
V
T
T
G
GAG
G
Q
I
D
P
T
Q
-----------
I
Q
V
T
D
-----
L
A
K
T
------
I
---
Q
D
P
L
A
A
-
K
L
R
E
R
-
L
K
-
S
D
F
G
V
V
K
N
------
S
K
---------
G
K
L
G
V
D
C
-
V
-
F
S
T
--
E
A
L
--
V
----
Y
------
P
G
----
F
G
A
-
A
T
M
V
T
A
-------
T
F
G
F
V
A
V
S
H
A
L
K
K
M
M
A
K
A
A
R
QG---------------
27
Fugue
51.57
16%
-48
- C1 -
4H1X
2
PSTS2_STRPN
A:
[9-265]
-----G
T
I
E
V
I
S
R
E
NGS
G
T
R
G
A
F
T
E
I
T
GILKKD
G
D
K
K
I
D
N
T
A
K
T
-
A
V
I
Q
N
S
-
T
E
G
V
L
S
A
V
------
Q
G
N
A
N
A
------
I
------
G
--
Y
I
S
L
G
S
L
T
K
S
V
--
K
A
L
E
-
I
D
----------
G
V
K
A
S
R
D
T
V
L
D
GEYPLQ
R
P
F
N
I
V
W
S
--
S
N
L
S
K
L
G
Q
D
F
I
S
------------------
F
I
H
S
----------
K
-----
Q
G
Q
Q
V
V
T
D
N
KFIEAKT
E
T
T
E
Y
T
S
QH
L
S
G
K
L
S
V
V
G
S
T
S
--------------
V
S
S
L
M
E
K
L
A
E
--------
A
------------
Y
K
K
E
N
P
E
-----------
V
T
I
D
I
T
--
S
N
G
S
S
A
------
G
---
I
T
A
V
K
E
K
T
A
D
I
G
M
V
S
-
R
E
--
L
T
P
E
------
E
G
---------
K
S
L
T
H
D
A
-
I
-
A
L
D
--
G
I
A
--
V
----
V
VNNDNK
A
S
----
Q
V
S
M
A
E
L
A
D
V
F
S
GKLTT
W
D
K
I
K
--------------------------------
28
Fugue
51.54
11%
-34
- C4 -
3OTD
5
THG1_HUMAN
A:
[3-269]
KSKFEYVRDFEADDTCLAH
C
W
V
V
V
R
L
D
G
R
N
F
H
R
F
A
E
K
H
N
F
A
K
P
N
D
S
R
A
L
Q
L
-
M
T
K
C
A
Q
T
V
------
M
E
E
L
E
--------------
D
--
I
V
I
A
Y
G
Q
S
D
E
Y
--
S
F
V
F
-
K
R
----------
K
T
N
W
F
K
R
R
A
--------
S
K
F
M
T
H
V
A
--
S
Q
F
A
S
S
Y
V
F
Y
W
R
------------------
D
Y
F
E
DQPLL
Y
P
P
G
F
D
-----
G
R
V
V
V
Y
P
-----------------------------
S
--------------
N
Q
T
L
-
K
D
Y
L
S
--------
W
------------
R
Q
A
D
C
H
I
-----------
N
N
L
Y
N
T
V
F
W
A
L
I
Q
Q
------
S
GLT
P
V
Q
A
Q
G
-
R
L
Q
G
T
-
L
A
-
A
D
K
N
E
I
L
F
------
S
E
FNINYNNEL
P
M
Y
R
K
G
T
-
V
-
L
I
W
--
Q
T
K
--
P
----
V
------
P
L
----
H
C
D
-
I
I
G
D
A
F
-------
W
K
E
H
P
E
ILDEDS-------------------------
6
PsiBlast_PDB
51.34
22%
24
- C3 -
3RP6
1
HPXO_KLEP7
A:
[209-312]
-------------------------------------------------------------------------------------------------------------------------------------------------
D
E
A
L
A
P
G
D
Q
W
T
T
------------------
F
V
G
E
----------
G
-----
K
R
V
S
L
M
P
-----------------------------
V
--------------
S
A
G
R
-
F
Y
F
F
F
D
V
P
L
P
A
GL
A
------------
E
D
R
D
T
L
R
-----------
A
D
L
S
R
Y
--
F
A
G
W
A
P
------
P
---
V
Q
K
L
I
A
-
A
L
D
P
Q
-
T
T
-
N
R
I
E
I
H
D
I
------
E
P
---------
F
S
R
L
-----------------------------------
V
R
-
G
R
V
A
L
L
-------
G
D
A
G
H
S
-------------------------------
10
PsiBlast_PDB
50.35
21%
22
- C3 -
3RP8
1
HPXO_KLEP7
A:
[209-312]
-------------------------------------------------------------------------------------------------------------------------------------------------
D
E
A
L
A
P
G
D
Q
W
T
T
------------------
F
V
G
E
----------
G
-----
K
Q
V
S
L
M
P
-----------------------------
V
--------------
S
A
G
R
-
F
Y
F
F
F
D
V
P
L
P
A
GL
A
------------
E
D
R
D
T
L
R
-----------
A
D
L
S
R
Y
--
F
A
G
W
A
P
------
P
---
V
Q
K
L
I
A
-
A
L
D
P
Q
-
T
T
-
N
R
I
E
I
H
D
I
------
E
P
---------
F
S
R
L
-----------------------------------
V
R
-
G
R
V
A
L
L
-------
G
D
A
G
H
S
-------------------------------
7
PsiBlast_PDB
49.22
22%
17
- C3 -
3RP7
2
HPXO_KLEP7
A:
[209-312]
-------------------------------------------------------------------------------------------------------------------------------------------------
D
E
A
L
A
P
G
D
Q
W
T
T
------------------
F
V
G
E
----------
G
-----
K
R
V
S
L
M
P
-----------------------------
V
--------------
S
A
G
R
-
F
Y
F
F
F
D
V
P
L
P
A
GL
A
------------
E
D
R
D
T
L
R
-----------
A
D
L
S
R
Y
--
F
A
G
W
A
P
------
P
---
V
Q
K
L
I
A
-
A
L
D
P
Q
-
T
T
-
N
R
I
E
I
H
D
I
------
E
P
---------
F
S
R
L
-----------------------------------
V
R
-
G
R
V
A
L
L
-------
G
D
A
G
H
S
-------------------------------
24
Fugue
49.09
14%
-23
* C4 *
1GS5
3
ARGB_ECOLI
A:
[1-258]
-----------------------------------
M
M
N
P
L
I
I
K
L
-
G
G
V
L
L
D
-
S
E
E
A
L
E
R
L
------
F
S
A
L
V
N
------
Y
R
E
S
H
Q
R
P
--
L
V
I
V
H
G
G
G
C
V
V
--
D
E
L
M
-
K
G
L
N
L
P
V
K
K
K
NG
L
R
V
T
P
A
D
Q
I
--------
D
I
I
T
G
A
L
A
--
G
T
A
N
K
T
L
L
A
W
A
K
K
H
QIA
A
V
G
L
F
LGDGDS
V
K
V
T
Q
L
----------
D
-----
E
E
L
G
H
V
G
-----------------------------
L
--------------
A
Q
P
G
-
S
P
K
L
I
--------
N
------------
S
L
L
E
N
G
Y
-----------
L
P
V
V
S
S
--
I
G
V
T
D
E
G
Q
L
M
N
V
N
---
A
D
Q
A
A
T
-
A
L
A
A
T
-
L
G
-
A
D
L
I
L
L
S
D
VSGILD
G
K
---------
G
Q
R
I
A
E
M
T
A
-
A
K
A
--
E
Q
L
--
I
E
Q
GI
I
------
T
D
----
G
M
I
-
V
K
V
N
A
A
-------
L
D
A
A
R
T
L
G
R
P
V
D
I
A
S
WRHAEQ
L
P
A
L
F
N
GMPM
G
T
R
I
L
A
31
Fugue
48.43
12%
-30
- C2 -
4EFA
1
VATE_YEAST
E:
[2-226]
-------SSAITALTPNQVNDELNKMQAFIRKE
A
E
E
K
A
K
E
I
Q
L
K
-
A
D
Q
E
Y
E
-
I
E
K
T
N
I
V
R
------
N
E
T
N
N
I
------
D
------
G
--
N
F
K
S
K
L
K
K
A
M
L
--
S
Q
Q
I
-
T
K
----------
S
T
I
A
N
K
M
R
L
--------
K
V
L
S
A
R
E
Q
SL
D
G
I
F
E
E
T
K
E
K
L
S
------------------
G
I
A
N
----------
N
-----
R
D
E
Y
K
P
I
-----------------------------
L
--------------
Q
S
L
I
-
V
E
A
L
L
--------
K
------------
L
L
E
P
K
A
I
-----------
V
K
A
L
E
R
D-
V
D
L
I
E
S
------
M
---
K
D
D
I
M
R
-
E
Y
G
E
K
-
A
Q
-
R
A
P
L
E
E
I
V
------
I
S
NDYLNK---
D
L
V
S
G
G
V
-
V
-
V
S
N
AS
D
K
I
--
E
----
I
------
N
N
----
T
L
E
-
E
R
L
K
L
L
-------
S
E
E
A
L
P
AIRLELYGPS---------------------
11
PsiBlast_PDB
44.32
22%
8
* C3 *
2GAX
1
?
A:
[6-133]
-----------------------------------------------------------------------------------------
I
A
V
I
L
R
D
D
L
A
V
W
Q
K
L
N
-
V
T
----------
A
F
L
M
S
G
I
V
A
--------
Q
T
-----
G
--
E
I
I
G
E
P
Y
R
D
G
A
G
------------------
N
V
Y
N
----------
P
-----
L
S
I
Q
P
I
V
-----------------------------
V
--------------
M
A
T
D
-
Q
E
A
L
R
--------
K
------------
I
H
Q
R
S
L
E
-----------
R
D
I
T
T
S
--
L
Y
I
-------------
E
E
M
F
A
T
-
G
H
D
A
A
--
N
-
R
Q
V
F
S
H
F
S
------
P
D
---------
T
A
K
V
V
G
M
-
A
-
L
R
A
--
D
R
K
--
I
----
V
------
D
K
----
I
T
K
-
G
--
A
K
L
--------------------------------------------
19
HHSearch
40.83
11%
-11
- C3 -
3TUF
-
SP3AH_BACSU
A:
[122-207]
------------------------------------------------------------------------------------------------
E
E
L
--
N
A
I
V
-
S
S
----------
D
D
A
T
A
K
E
K
S
--------
E
A
Y
D
K
M
T
A
--
L
S
E
V
E
G
T
E
K
Q
L
E
------------------
T
L
I
K
----------
T
----------------------------------------------------------
Q
G
-
Y
E
D
A
L
V
-------
N
------------
A
E
G
D
K
I
N
-----------
I
T
V
K
S
---
D
K
H
S
K
S
------
K
---
A
T
A
I
I
D
-
L
V
A
K
E
-
I
K
-
T
M
-------------------------------------------------------------------------------------------------------------------
15
HHSearch
39.97
20%
-52
- C3 -
2DM9
-
VATE_PYRHO
A:
[137-189]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
E
-
E
I
K
S
E
-
L
G
--
D
V
S
I
E
L
G
------
E
T
---------
V
D
T
M
G
G
V
-
I
-
V
E
T
ED
G
R
I
--
R
----
I
------
D
N
----
T
F
E
-
A
R
M
E
R
F
-------
E
G
E
I
R
--------------------------------
25
Fugue
36.74
11%
-23
- C4 -
1B6T
2
COAD_ECOLI
A:
[3-159]
----------------------------------------
K
R
A
I
-
Y
P
G
T
F
D
P
I
T
N
G
H
I
D
I
------
V
T
R
A
T
Q
------
M
------
F
D
H
V
I
L
A
I
A
A
-
S
P
S
-------
K
K
----------
P
M
F
T
L
E
E
R
V
--------
A
L
A
Q
Q
A
T
A
--
H
L
G
N
V
----
E
V
V
------------------
G
F
S
D
-----------------
L
M
A
N
F
A
-----------------------------
R
--------------
N
Q
H
A
-
T
V
L
I
R
--------
G
------------
L
R
A
V
A
D
---------------
F
E
Y
--
E
M
Q
L
A
H
------
M
---
N
R
H
L
M
P
-
E
L
E
S
V
-
F
L
-
M
P
S
K
E
W
S
F
------
I
S
---------
S
S
L
V
K
E
V
-
A
-
R
H
Q
--
G
D
--------
V
------
T
H
----
F
L
P
-
E
N
V
H
Q
A
-------
L
M
A
K
L
A
-------------------------------
9
PsiBlast_PDB
35.48
25%
-11
- C3 -
3JSK
1
THI4_NEUCR
A:
[41-100]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
L
M
P
-----------------------------
T
--------------
L
G
--------------------------------------------------
T
D
A
--
F
T
F
S
P
I
------
R
---
E
S
T
V
S
R
-
A
M
T
R
R
-
Y
F
-
A
D
L
D
A
H
A
E
------
T
D
---------
I
V
I
V
G
---------------------------------------------------------------------------------------
20
HHSearch
33.45
13%
-25
- C3 -
2HC5
-
YVYC_BACSU
A:
[4-75]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
L
T
T
L
Q
-----------------------------
P
--------------
V
W
D
R
-
Y
D
T
Q
I
--------
H
------------
N
Q
K
D
N
-------------
D
N
E
V
P
V
--
H
Q
V
S
Y
T
------
N
---
L
A
E
M
V
G
-
E
M
N
K
L
-
L
E
P
S
Q
V
H
L
K
F
E
------
L
H
---------
D
K
-
L
N
E
Y
-
Y
-
V
K
V
--
I
E
---------------------------------------------------------------------------
8
PsiBlast_PDB
31.37
28%
-4
- C3 -
1KNB
-
SPIKE_ADE05
A:
[396-454]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
D
K
L
T
L
-
W
T
T
P
A
-
P
S
-
P
N
C
R
L
N
A
E
------
K
D
---------
A
K
L
T
-
L
V
-
L
-
T
K
C
--
G
S
Q
--
I
----
L
------
A
T
V
S
V
L
A
V
K
-
G
S
L
A
P
I
-------
S
G
T
V
Q
S
-------------------------------
29
Fugue
30.42
10%
14
* C2 *
1URU
-
?
A:
[26-242]
-------------QNLGKVDRT
A
D
E
I
F
D
D
H
L
N
N
F
N
R
Q
Q
A
S
A
N
R
L
-
Q
K
E
F
N
N
-
Y
I
R
C
V
R
A
A
------
Q
A
A
S
K
T
------
L
M
-----
D
--
S
V
C
E
I
Y
E
P
Q
W
S
G-
Y
D
A
L
-
Q
A
----------
Q
T
G
A
S
E
S
L
W
--------
A
D
F
A
H
K
L
G
--
D
Q
V
L
I
P
L
N
T
Y
T
G
------------------
Q
F
P
E
M
---------
K
-----
K
K
V
E
K
R
N
-----------------------------
R
--------------
K
L
I
D
-
Y
D
G
Q
R
--------
H
------------
S
F
Q
N
L
Q
A
NANKRKDDVKL
T
K
G
R
E
Q
--
L
E
E
A
R
R
------
T
---
Y
E
I
L
N
T
-
E
L
H
D
E
-
L
P
-
A
L
Y
D
S
R
I
L
------
F
L
---------
V
T
N
L
Q
T
L
-
F
A
T
E
Q
--
V
F
H
--
N
----
E
------
T
A
----
K
I
Y
-
S
E
L
E
A
I
-------
V
D
K
L
A
T
E
S
Q
R---------------------------
17
HHSearch
29.96
16%
-16
- C3 -
3V6I
-
VATE_THET8
A:
[121-178]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
N
P
E
------
D
---
L
P
H
L
E
A
-
L
A
R
E
-------
R
G
V
E
L
Q
------
A
E
---------
P
A
L
R
L
G
V
-
R
-
A
V
G
--
A
E
G
K
T
Q
----
V
------
E
N
----
S
L
L
-
A
R
L
D
R
A
-------
W
D
A
L
S
--------------------------------