@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF01327_DEF_MY: (2014-09-22 )
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NVC_A_3(3E3U)
DEF_MYCTU
[Raw transfer]




BB2_A_5(3U04)
?
[Raw transfer]




BB2_A_3(1LRY)
DEF_PSEAE
[Raw transfer]




2BB_A_5(3K6L)
DEF_ECOLI
[Raw transfer]




BB2_A_7(1G2A)
DEF_ECOLI
[Raw transfer]




BB2_A_5(3UWB)
?
[Raw transfer]




BB2_A_5(1IX1)
DEF_PSEAE
[Raw transfer]




BB2_A_7(4DR9)
?
[Raw transfer]




GNR_A_5(1S17)
DEF_PSEAE
[Raw transfer]




FMT_A_3(1XEO)
DEF_ECOLI
[Raw transfer]




GOL_A_7(1N5N)
DEF_PSEAE
[Raw transfer]




GOL_A_5(1N5N)
DEF_PSEAE
[Raw transfer]




FMT_A_13(1Y6H)
DEF_LEPIN
[Raw transfer]




GOL_A_5(1N5N)
DEF_PSEAE
[Raw transfer]




BRR_A_5(1RL4)
?
[Raw transfer]




FMT_A_3(2W3U)
DEF_ECOLI
[Raw transfer]




QAP_A_3(4E9A)
?
[Raw transfer]




FMT_A_7(4DR8)
?
[Raw transfer]




2PE_A_9(1ICJ)
DEF_ECOLI
[Raw transfer]




2PE_A_9(1BS4)
DEF_ECOLI
[Raw transfer]




2PE_A_9(1BS4)
DEF_ECOLI
[Raw transfer]




EOH_A_4(2W3T)
DEF_ECOLI
[Raw transfer]




EOH_A_4(2W3T)
DEF_ECOLI
[Raw transfer]




H2S_A_3(4AZ4)
?
[Raw transfer]




H2S_A_5(4AL2)
DEF_ECOLI
[Raw transfer]




CHAIN_D_4(1BS6)
DEF_ECOLI
[Raw transfer]

-

EDO_B_10(4DR8)
?
[Raw transfer]




1 PsiBlast_PDB 99.05100%-108 - C1 -3E3U 6.8 DEF_MYCTU
34 HHSearch 64.2438% -92 - C1 -1N5N 1.9 DEF_PSEAE
32 HHSearch 63.4332% -94 - C1 -3U04 5.0 ?
5 PsiBlast_PDB 62.4937% -98 - C1 -1LRY 5.9 DEF_PSEAE
4 PsiBlast_PDB 62.2737% -93 - C1 -1S17 3.8 DEF_PSEAE
36 HHSearch 61.8734%-100 - C1 -4DR8 3.3 ?
41 HHSearch 61.8233% -91 - C1 -2W3T 2.4 DEF_ECOLI
33 HHSearch 61.6733% -91 - C1 -1XEO 3.5 DEF_ECOLI
2 PsiBlast_PDB 60.3738% -88 - C1 -1IX1 6.3 DEF_PSEAE
23 Fugue 59.4732% -84 - C1 -1G2A 6.2 DEF_ECOLI
8 PsiBlast_PDB 58.2434% -93 - C1 -4DR9 6.6 ?
22 Fugue 58.1831% -82 - C1 -1BS4 4.1 DEF_ECOLI
6 PsiBlast_PDB 57.8234%-100 - C1 -3K6L 5.2 DEF_ECOLI
15 PsiBlast_PDB 57.4534% -96 - C1 -4AL2 2.8 DEF_ECOLI
16 PsiBlast_PDB 56.1734% -91 - C1 -1ICJ 3.9 DEF_ECOLI
13 PsiBlast_PDB 56.0134% -92 - C1 -2W3U 3.4 DEF_ECOLI
11 PsiBlast_PDB 55.7434% -92 - C1 -4AZ4 2.9 ?
37 HHSearch 55.2533% -83 - C1 -1Y6H 3.4 DEF_LEPIN
19 PsiBlast_PDB 55.0434% -95 - C1 -1BS6 2.9 DEF_ECOLI
44 HHSearch 53.6633% -87 - C1 -3UWB 6.2 ?