@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1201: (2015-12-21 )
MKDILNALYHQKDLNDEEVKKLFTLIIDEKVSPAQLGAVLCALKIKGESFKEISVAATTLLEHAPKPFNSGLDLIDNCGTGGDGLKTINISTIAALIASSMGLSMAKHGSRSVSSHSGSADLLENLGVNIEMNPMQLENCFKQSHFGFLFAPLYHQSFKKSAPLRKELFTKTIFNCLGPLINPLRPKIQLLGVYDKSLCKTMALALKALGVKRAMVVNGGGTDEIVLHDITHACELKNNEILEYDLSAKDFDLPPYDLKELQIENAKESVQACLDILENKGKDSHTMVVAANVASLLYLSHRAKDLKEGVSMTLEHLKTKAPYAHLQKIIRLSHA

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PRP_A_3(4N5V)
TRPD_MYCTU
[Raw transfer]




644_A_3(4M0R)
TRPD_MYCTO
[Raw transfer]




PRP_A_7(4N93)
TRPD_MYCTU
[Raw transfer]




6M1_A_5(4N93)
TRPD_MYCTU
[Raw transfer]




GOL_D_13(2ELC)
TRPD_THET8
[Raw transfer]




GOL_C_12(2ELC)
TRPD_THET8
[Raw transfer]




PRP_A_5(3QQS)
TRPD_MYCTU
[Raw transfer]




PRP_A_3(4GKM)
TRPD_MYCTU
[Raw transfer]




GOL_C_11(2ELC)
TRPD_THET8
[Raw transfer]




GOL_A_9(2ELC)
TRPD_THET8
[Raw transfer]




GOL_A_9(2ELC)
TRPD_THET8
[Raw transfer]




FA0_A_6(4N5V)
TRPD_MYCTU
[Raw transfer]




17C_A_8(3QQS)
TRPD_MYCTU
[Raw transfer]




683_A_6(4GKM)
TRPD_MYCTU
[Raw transfer]




PRP_B_6(3GBR)
TRPD_SULSO
[Raw transfer]




49 HHSearch 95.3240%-111 - C2 -1KHD - ? -
1 PsiBlast_PDB 94.4941%-103 - C2 -1KGZ - ? -
38 Fugue 94.2739%-109 - C2 -1KHD - ? -
21 PsiBlast_CBE 94.0641%-103 - C2 -1KGZ - ? -
2 PsiBlast_PDB 93.5741%-107 - C2 -1KHD - ? -
48 HHSearch 91.8235% -97 - C2 -1VQU - TRPD2_NOSS1 -
51 HHSearch 88.7134%-114 * C2 *1O17 - TRPD_SULSO -
50 HHSearch 88.3234%-102 - C2 -2ELC 2.4 TRPD_THET8
32 PsiBlast_CBE 87.0036%-108 - C2 -1GXB - TRPD_SULSO -
6 PsiBlast_PDB 86.7636%-107 - C2 -1GXB - TRPD_SULSO -
5 PsiBlast_PDB 86.7536%-109 - C2 -1O17 - TRPD_SULSO -
27 PsiBlast_CBE 86.5536%-101 - C2 -1ZYK - TRPD_SULSO -
8 PsiBlast_PDB 86.2936%-101 - C2 -1ZYK - TRPD_SULSO -
18 PsiBlast_PDB 86.1630% -91 - C2 -3QR9 - TRPD_MYCTU -
19 PsiBlast_PDB 86.1330% -91 - C2 -3QQS 5.9 TRPD_MYCTU
33 PsiBlast_CBE 86.1136%-106 - C2 -1GXB - TRPD_SULSO -
3 PsiBlast_PDB 85.9836%-109 - C2 -4YI7 - ? -
20 PsiBlast_PDB 85.9330% -93 - C2 -3QS8 - TRPD_MYCTU -
37 PsiBlast_CBE 85.7735%-104 - C2 -3GBR 3.4 TRPD_SULSO
16 PsiBlast_PDB 85.7530% -93 - C2 -4GKM 6.5 TRPD_MYCTU
15 PsiBlast_PDB 85.1830% -91 - C2 -4N93 6.6 TRPD_MYCTU
17 PsiBlast_PDB 85.1630% -91 - C2 -4M0R 7.0 TRPD_MYCTO
13 PsiBlast_PDB 85.0930% -91 - C2 -4N5V 7.2 TRPD_MYCTU
11 PsiBlast_PDB 81.3235% -93 - C2 -2ELC 2.4 TRPD_THET8
34 PsiBlast_CBE 80.8635% -94 - C2 -2ELC 3.4 TRPD_THET8
35 PsiBlast_CBE 80.1135% -91 - C2 -2ELC 3.3 TRPD_THET8