@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1052: (2016-03-21 )
MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLDHLRERLVGRGTESNEKIQSRINEARKEVEMMNLYDYVVVNDEVELAKNRIQCIVEAEHLKRERVEAKYRKMILEAKK

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

G5P_G_7(2F3R)
KGUA_ECOLI
[Raw transfer]




0O2_B_8(4QRH)
?
[Raw transfer]




G5P_J_10(2F3R)
KGUA_ECOLI
[Raw transfer]




0O2_C_12(4QRH)
?
[Raw transfer]




GDP_S_19(2AN9)
KGUA_ECOLI
[Raw transfer]




0O2_D_18(4QRH)
?
[Raw transfer]




5GP_D_15(2J41)
KGUA_STAAC
[Raw transfer]




5GP_C_11(2J41)
KGUA_STAAC
[Raw transfer]




5GP_B_8(2J41)
KGUA_STAAC
[Raw transfer]




GDP_M_13(2AN9)
KGUA_ECOLI
[Raw transfer]




5GP_M_13(2ANB)
KGUA_ECOLI
[Raw transfer]




5GP_A_4(3TR0)
KGUA_COXBU
[Raw transfer]




5GP_A_2(2QOR)
?
[Raw transfer]




5GP_A_4(3TR0)
KGUA_COXBU
[Raw transfer]




5GP_D_4(1GKY)
KGUA_YEAST
[Raw transfer]




5GP_D_4(1EX7)
KGUA_YEAST
[Raw transfer]




5GP_D_4(1EX7)
KGUA_YEAST
[Raw transfer]




GDP_B_2(1ZNZ)
KGUA_MYCTU
[Raw transfer]




GDP_B_2(1ZNY)
KGUA_MYCTU
[Raw transfer]




5GP_B_2(1ZNX)
KGUA_MYCTU
[Raw transfer]




FMT_A_3(1S4Q)
KGUA_MYCTU
[Raw transfer]




FMT_B_2(1Z8F)
KGUA_MYCTU
[Raw transfer]




LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]




LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]




LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]




LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]




ADP_C_3(1LVG)
KGUA_MOUSE
[Raw transfer]




ADP_C_3(1LVG)
KGUA_MOUSE
[Raw transfer]




EPE_G_7(1Z6G)
?
[Raw transfer]




EPE_G_7(1Z6G)
?
[Raw transfer]




23 PsiBlast_CBE 91.8299%-102 - C2 -4QRH 10.5 ?
1 PsiBlast_PDB 91.6299%-109 - C2 -4QRH - ? -
24 PsiBlast_CBE 90.7899%-108 - C2 -2J41 7.3 KGUA_STAAC
21 PsiBlast_CBE 90.7399% -99 - C2 -4QRH 10.4 ?
22 PsiBlast_CBE 90.5999%-100 - C2 -4QRH 10.5 ?
26 PsiBlast_CBE 87.1899%-108 - C2 -2J41 7.2 KGUA_STAAC
25 PsiBlast_CBE 86.6099%-103 - C2 -2J41 7.5 KGUA_STAAC
50 HHSearch 85.4261% -96 - C2 -3TAU - KGUA_LISMO -
2 PsiBlast_PDB 85.3599%-110 - C2 -2J41 - KGUA_STAAC -
3 PsiBlast_PDB 85.2060% -96 - C2 -3TAU - KGUA_LISMO -
12 PsiBlast_PDB 80.6740% -85 - C2 -1S96 - KGUA_ECOLI -
27 PsiBlast_CBE 80.3540% -82 - C2 -2F3T 2.8 KGUA_ECOLI
62 HHSearch 80.2239% -86 - C2 -1S96 - KGUA_ECOLI -
8 PsiBlast_PDB 79.4140% -83 - C2 -2F3T 3.4 KGUA_ECOLI
29 PsiBlast_CBE 79.3840% -85 - C2 -2F3T 3.5 KGUA_ECOLI
28 PsiBlast_CBE 78.7340% -83 - C2 -2F3T 4.0 KGUA_ECOLI
61 HHSearch 78.1440%-101 - C2 -1ZNW - KGUA_MYCTU -
6 PsiBlast_PDB 77.5940% -83 - C2 -2ANC - KGUA_ECOLI -
7 PsiBlast_PDB 76.8540% -81 - C2 -2F3R 9.9 KGUA_ECOLI
16 PsiBlast_PDB 76.8042% -92 - C2 -1ZNW - KGUA_MYCTU -
4 PsiBlast_PDB 76.0240% -78 - C2 -2AN9 5.9 KGUA_ECOLI
19 PsiBlast_PDB 75.8542% -86 - C2 -1ZNZ 3.7 KGUA_MYCTU
18 PsiBlast_PDB 75.7242% -90 - C2 -1ZNY 3.1 KGUA_MYCTU
31 PsiBlast_CBE 75.0340% -77 - C2 -2AN9 6.5 KGUA_ECOLI
30 PsiBlast_CBE 74.9840% -85 - C2 -2F3R 8.6 KGUA_ECOLI
17 PsiBlast_PDB 74.6342% -92 - C2 -1ZNX 4.7 KGUA_MYCTU
20 PsiBlast_PDB 74.4042% -90 - C2 -1Z8F 3.4 KGUA_MYCTU
15 PsiBlast_PDB 73.5942% -88 - C2 -1S4Q 3.5 KGUA_MYCTU
14 PsiBlast_PDB 73.5139% -81 - C2 -3TR0 6.6 KGUA_COXBU
11 PsiBlast_PDB 72.5142% -79 - C2 -1GKY 7.4 KGUA_YEAST
5 PsiBlast_PDB 72.3940% -73 - C2 -2ANB 5.8 KGUA_ECOLI
57 HHSearch 71.8341% -80 - C2 -1EX7 7.0 KGUA_YEAST
53 HHSearch 71.6939% -80 * C2 *3TR0 6.6 KGUA_COXBU
10 PsiBlast_PDB 71.6742% -82 - C2 -1EX7 7.0 KGUA_YEAST
55 HHSearch 68.3537% -68 - C2 -1LVG 7.1 KGUA_MOUSE
33 PsiBlast_CBE 67.5339% -67 - C2 -1LVG 7.1 KGUA_MOUSE
34 PsiBlast_CBE 65.1136% -78 - C2 -1Z6G 3.1 ?
60 HHSearch 62.9533% -75 - C2 -1Z6G 3.1 ?
51 HHSearch 59.8035% -68 - C2 -2QOR 8.8 ?