@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1728: (2016-03-28 )
MSKLQDVIVQEMKVKKRIDSAEEIMELKQFIKNYVQSHSFIKSLVLGISGGQDSTLVGKLVQMSVNELREEGIDCTFIAVKLPYGVQKDADEVDQALRFIEPDEIVTVNIKPAVDQSVQSLKEAGIVLTDFQKGNEKARERMKVQFSIASNRQGIVVGTDHSAENITGFYTKYGDGAADIAPIFGLNKRQGRQLLAYLGAPKELYEKTPTADLEDDKPQLPDEDALGVTYEAIDNYLEGKPVTPEEQKVIENHYIRNAHKRELAYTRYTWPKS

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADJ_B_19(1KQP)
NADE_BACSU
[Raw transfer]



APC_A_5(2PZ8)
NADE_BACAN
[Raw transfer]



APC_B_6(2PZ8)
NADE_BACAN
[Raw transfer]



APC_A_6(1IH8)
NADE_BACSU
[Raw transfer]



ATP_A_6(1EE1)
NADE_BACSU
[Raw transfer]



AMP_B_7(2PZA)
NADE_BACAN
[Raw transfer]



AMP_C_17(3FIU)
?
[Raw transfer]



AMP_A_8(2PZA)
NADE_BACAN
[Raw transfer]



AMP_A_5(1WXI)
NADE_ECOLI
[Raw transfer]



AMP_D_22(3FIU)
?
[Raw transfer]



AMP_A_5(1WXI)
NADE_ECOLI
[Raw transfer]



AMP_A_4(1FYD)
NADE_BACSU
[Raw transfer]



NAD_A_8(2NSY)
NADE_BACSU
[Raw transfer]



NAD_B_10(2NSY)
NADE_BACSU
[Raw transfer]



AMP_A_7(3FIU)
?
[Raw transfer]



NAD_A_8(2NSY)
NADE_BACSU
[Raw transfer]



AMP_B_12(3FIU)
?
[Raw transfer]



AMP_A_7(3FIU)
?
[Raw transfer]



DND_C_3(1IFX)
NADE_BACSU
[Raw transfer]



DND_A_4(1EE1)
NADE_BACSU
[Raw transfer]



ATP_A_6(1NSY)
NADE_BACSU
[Raw transfer]



DND_B_5(1EE1)
NADE_BACSU
[Raw transfer]



DND_D_4(1IFX)
NADE_BACSU
[Raw transfer]



NAD_B_2(1WXH)
NADE_ECOLI
[Raw transfer]



ATP_B_5(1NSY)
NADE_BACSU
[Raw transfer]



DND_A_5(1XNG)
NADE_HELPY
[Raw transfer]



DND_B_6(1XNG)
NADE_HELPY
[Raw transfer]
1 PsiBlast_PDB 93.4658% -72 - C7 -1WXE - NADE_ECOLI -
5 PsiBlast_PDB 91.8958% -66 - C7 -1WXI 4.4 NADE_ECOLI
2 PsiBlast_PDB 90.7258% -68 - C7 -1WXF - NADE_ECOLI -
3 PsiBlast_PDB 90.4858% -71 - C7 -1WXG - NADE_ECOLI -
16 PsiBlast_PDB 90.3750% -63 - C7 -3Q4G - NADE_VIBCH -
4 PsiBlast_PDB 88.7058% -69 - C7 -1WXH 6.5 NADE_ECOLI
39 HHSearch 88.3558% -58 - C7 -1WXI 4.4 NADE_ECOLI
6 PsiBlast_PDB 87.6259% -64 - C7 -3HMQ - NADE_SALTY -
13 PsiBlast_PDB 85.6252% -54 - C7 -4Q16 - NADE_DEIRA -
9 PsiBlast_PDB 84.7650% -49 - C7 -1EE1 7.0 NADE_BACSU
23 PsiBlast_CBE 84.5550% -49 - C7 -1KQP 8.9 NADE_BACSU
10 PsiBlast_PDB 84.4850% -50 - C7 -1FYD 3.8 NADE_BACSU
12 PsiBlast_PDB 84.3850% -49 - C7 -1IH8 6.2 NADE_BACSU
22 PsiBlast_CBE 84.2750% -50 - C7 -1NSY 3.8 NADE_BACSU
21 PsiBlast_CBE 84.2650% -48 - C7 -2NSY 6.1 NADE_BACSU
27 PsiBlast_CBE 84.1052% -55 - C7 -4Q16 - NADE_DEIRA -
31 PsiBlast_CBE 83.8848% -53 - C7 -2PZ8 6.9 NADE_BACAN
30 PsiBlast_CBE 83.8548% -53 - C7 -2PZA 4.0 NADE_BACAN
8 PsiBlast_PDB 83.6850% -47 - C7 -2NSY 7.1 NADE_BACSU
60 Fugue 82.9448% -46 - C7 -2NSY 7.1 NADE_BACSU
15 PsiBlast_PDB 82.8548% -51 - C7 -2PZA 4.4 NADE_BACAN
25 PsiBlast_CBE 82.7650% -70 - C7 -1IFX 6.0 NADE_BACSU
11 PsiBlast_PDB 82.6250% -66 - C7 -1IFX 6.2 NADE_BACSU
7 PsiBlast_PDB 82.5950% -48 - C7 -1NSY 4.1 NADE_BACSU
26 PsiBlast_CBE 82.0350% -66 - C7 -1EE1 5.8 NADE_BACSU
14 PsiBlast_PDB 81.5348% -52 - C7 -2PZ8 7.0 NADE_BACAN
41 HHSearch 66.0133% -45 * C7 *3FIU 4.3 ?
19 PsiBlast_PDB 65.0734% -37 - C7 -3FIU 4.2 ?
32 PsiBlast_CBE 64.8834% -36 - C7 -3FIU 4.4 ?
33 PsiBlast_CBE 64.6734% -37 - C7 -3FIU 4.7 ?
34 PsiBlast_CBE 63.8834% -34 - C7 -3FIU 4.5 ?
36 PsiBlast_CBE 54.4831% -34 - C7 -1XNG 6.0 NADE_HELPY
37 PsiBlast_CBE 53.5531% -33 - C7 -1XNG 6.1 NADE_HELPY