@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0111: (2015-12-12 )
MRYIKFFKELNNKNVNLVGGKNASIGEMFQELVPIGIKVPDGFAITSEAYWYLLEQGGAKQKIIELLENVDATEIDVLKIRSKQIRELIFGTPFPSDLRDEIFQAYEILSQQYHMKEADVAVRSSATAEDLPDASFAGQQDTYLNIKGKTELIHYIKSCLASLFTDRAISYRASRGFDHLKVALSVGVQKMVRADKGSAGVMFSIDTETGFKDAVFITSAWGLGENVVGGTINPDEFYVFKPTLEQNKRPIIKRQLGNKTQKMVYAPRGSEHPTRNIKTTKKEWQSFSLSDEDVLILAKYAIEIEKHYSKEAKQYRPMDIEWAKDGESGEIFIVQARPETVQSQKTKEENQVFEKFKFKNPNEKKEIILQGRAIGSKIGSGKVRIINDLEHMNSFKEGEILVTDNTDPDWEPCMKKASAVITNRGGRTCHAAIVAREIGVPAIVGVSGATDSLYTGMEITVSCAEGEEGYVYAGIYEHEIERVELSNMQETQTKIYINIGNPEKAFSFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEKNEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEPNEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNMKVMIPFLRTIEEGKKVLEILRKNNLESGKNGLEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGVDRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITSISLNPDSVIPTWNAVAKLEKELKDHGLTAR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PEP_A_2(2XZ7)
?
[Raw transfer]



PEP_A_4(1VBH)
PPDK1_MAIZE
[Raw transfer]
33 HHSearch 85.3625% -66 - C1 -1VBG - PPDK1_MAIZE -
32 HHSearch 83.2225% -61 - C1 -1KBL - PPDK_CLOSY -
10 PsiBlast_PDB 78.9524% -54 - C1 -2R82 - PPDK_CLOSY -
6 PsiBlast_PDB 78.7524% -49 - C1 -1KBL - PPDK_CLOSY -
12 PsiBlast_PDB 78.5823% -47 - C1 -1VBH 2.7 PPDK1_MAIZE
11 PsiBlast_PDB 77.9723% -48 - C1 -1VBG - PPDK1_MAIZE -
7 PsiBlast_PDB 77.6524% -48 - C1 -1KC7 - PPDK_CLOSY -
34 HHSearch 77.4423% -53 * C1 *2X0S - ? -
54 Fugue 77.1022% -39 - C1 -1JDE - PPDK_CLOSY -
8 PsiBlast_PDB 76.3824% -44 - C1 -1GGO - PPDK_CLOSY -
5 PsiBlast_PDB 75.6124% -47 - C1 -1DIK - PPDK_CLOSY -
9 PsiBlast_PDB 74.9524% -41 - C1 -2DIK - PPDK_CLOSY -
16 PsiBlast_PDB 70.4422% -50 - C1 -2X0S - ? -
36 HHSearch 66.8228% -80 - C1 -2WQD - PT1_STAAU -
3 PsiBlast_PDB 61.0926% -70 - C1 -2XDF - PT1_ECOLI -
4 PsiBlast_PDB 60.4926% -69 - C1 -2L5H - PT1_ECOLI -
2 PsiBlast_PDB 60.1126% -68 - C1 -2KX9 - PT1_ECOLI -
1 PsiBlast_PDB 59.9728% -66 - C1 -2WQD - PT1_STAAU -
37 HHSearch 58.1328% -67 - C1 -2XZ9 - ? -
59 Fugue 49.7721% -51 - C1 -1DIK - ? -