@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0389: (2015-12-15 )
MKFYTYSGETAAEALKIAQSHHGVDTLVFKTQEIRKKTLTSSGLYEIVVAVEEEENKKAPLIPESLYDEELNEEDVVMQLSSTVEEMRKLAGVSSNQRNYTFSKNKTLLEKDAPLEDTPLEANKQDALLQALKDEANHKKEREKREVKQEEEIKDINAQLSKIRDSLKLIQNMFWDEKNPNSVNIPQEFAEIYKLAKQSGMKSSHLDEIMQLSLELMPLRMRENSVTIKRYFREVLRKIILCRPEDLNLRQKRILMLVGPTGVGKTTTLAKLAARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDAKDFAKEIEALEYCDFILVDTTGHSQYDKEKIAGLKEFIDGGYNIDVSLVLSVTTKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVDCMLDGFSNPNKEQA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_C_23(3SYN)
FLHF_BACSU
[Raw transfer]



GDP_A_9(3SYN)
FLHF_BACSU
[Raw transfer]



GDP_B_17(3SYN)
FLHF_BACSU
[Raw transfer]



GTP_A_3(2PX3)
FLHF_BACSU
[Raw transfer]



GCP_A_5(1RJ9)
FTSY_THEAQ
[Raw transfer]



EDO_A_2(2YHS)
FTSY_ECOLI
[Raw transfer]



AF3_C_25(3SYN)
FLHF_BACSU
[Raw transfer]
3 PsiBlast_PDB 83.1735% -91 - C6 -3SYN 7.1 FLHF_BACSU
71 HHSearch 83.1626% -89 - C6 -2FFH - SRP54_THEAQ -
29 PsiBlast_CBE 82.8735% -86 - C6 -2PX0 - FLHF_BACSU -
22 PsiBlast_CBE 82.4835% -91 - C6 -3SYN 7.8 FLHF_BACSU
23 PsiBlast_CBE 82.2635% -90 - C6 -3SYN 7.5 FLHF_BACSU
1 PsiBlast_PDB 82.0435% -93 - C6 -2PX0 - FLHF_BACSU -
21 PsiBlast_CBE 81.8935% -91 - C6 -3SYN - FLHF_BACSU -
25 PsiBlast_CBE 81.8435% -91 - C6 -2PX0 - FLHF_BACSU -
65 HHSearch 81.7932% -93 - C6 -2PX0 - FLHF_BACSU -
27 PsiBlast_CBE 81.7635% -92 - C6 -2PX0 - FLHF_BACSU -
2 PsiBlast_PDB 81.3735% -93 - C6 -2PX3 7.4 FLHF_BACSU
30 PsiBlast_CBE 81.1435% -82 - C6 -2PX0 - FLHF_BACSU -
28 PsiBlast_CBE 80.2235% -89 - C6 -2PX0 - FLHF_BACSU -
7 PsiBlast_PDB 79.9226% -76 - C6 -4AK9 - ? -
26 PsiBlast_CBE 79.8135% -92 - C6 -2PX0 - FLHF_BACSU -
24 PsiBlast_CBE 77.8635% -88 - C6 -2PX0 - FLHF_BACSU -
66 HHSearch 76.7427% -84 - C6 -3B9Q - CFTSY_ARATH -
73 HHSearch 76.4720% -72 - C6 -2YHS 3.1 FTSY_ECOLI
77 HHSearch 75.5124% -81 - C6 -1J8M - SRP54_ACIAM -
68 HHSearch 74.7726% -83 - C6 -2OG2 - CFTSY_ARATH -