@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0711: (2015-12-17 )
MEQKISVALKEIKRGANEIIGLEYIEKLVRKYYETNERFIVKAGFDPTAPDLHLGHTVLIQKLALLQQYGARVKFLIGDFTAMIGDPTGKNETRKPLNREQVLENAKTYKEQIYKILDQKHTEVCFNSAWLDALGAKGMIELCAKFSVARMLERDDFAKRYKENRPISIVEFLYPLLQGYDSVAMGADIELGGNDQKFNLLVGRFLQRAYGLNKEQSIITMPLLEGLDGVQKMSKSLGNYVGITEEPNAMFGKIMSVSDDLMWRYYTLLSAKTLEEIEDLKHGILHQTLHPKAVKEDLASEIVARYYDNDQAFKAKEQFSKVFSANLLPEILLESDFDEGVGVLDVLKQIGFCPSTSQARRDIQGGGVKINQEVVKDESYRFVKGNYVIQLGKKRFMKLNIN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

YSA_C_3(1VBN)
SYY_ECOLI
[Raw transfer]



AZY_A_2(2YXN)
SYY_ECOLI
[Raw transfer]



YSA_G_7(1VBM)
SYY_ECOLI
[Raw transfer]



TYA_C_3(3TS1)
SYY_GEOSE
[Raw transfer]



TYR_C_3(1WQ4)
SYY_ECOLI
[Raw transfer]



TYR_E_5(1X8X)
SYY_ECOLI
[Raw transfer]



IYR_C_3(1WQ3)
SYY_ECOLI
[Raw transfer]



TYB_A_8(1H3F)
SYY_THET2
[Raw transfer]



TYB_A_8(1H3F)
SYY_THET2
[Raw transfer]



TYB_A_8(1H3F)
SYY_THET2
[Raw transfer]



TYB_B_9(1H3F)
SYY_THET2
[Raw transfer]



ATP_A_5(1H3E)
SYY_THET2
[Raw transfer]
21 PsiBlast_CBE 97.1841% -97 - C3 -1H3F 2.5 SYY_THET2
2 PsiBlast_PDB 95.4641% -85 - C3 -1H3E 5.0 SYY_THET2
1 PsiBlast_PDB 94.9041% -93 - C3 -1H3F 2.4 SYY_THET2
56 Fugue 93.3842% -87 - C3 -1H3F 2.4 SYY_THET2
38 HHSearch 91.9342% -88 - C3 -1H3F 2.4 SYY_THET2
9 PsiBlast_PDB 84.5730% -82 - C3 -2JAN - SYY_MYCTU -
37 HHSearch 81.3328% -78 - C3 -2JAN - SYY_MYCTU -
7 PsiBlast_PDB 72.4428% -69 - C3 -2TS1 - SYY_GEOSE -
8 PsiBlast_PDB 71.9828% -68 - C3 -3TS1 5.9 SYY_GEOSE
36 HHSearch 71.9028% -57 - C3 -2TS1 - SYY_GEOSE -
13 PsiBlast_PDB 70.3629% -71 - C3 -1TYA - SYY_GEOSE -
40 HHSearch 70.3326% -57 - C3 -2PID - SYYM_HUMAN -
15 PsiBlast_PDB 69.9529% -73 - C3 -1TYC - SYY_GEOSE -
14 PsiBlast_PDB 69.8829% -73 - C3 -1TYD - SYY_GEOSE -
17 PsiBlast_PDB 69.6529% -65 - C3 -1VBN 7.5 SYY_ECOLI
10 PsiBlast_PDB 69.6129% -65 - C3 -1X8X 3.1 SYY_ECOLI
16 PsiBlast_PDB 69.4229% -71 - C3 -1TYB - SYY_GEOSE -
6 PsiBlast_PDB 68.8428% -63 - C3 -1JIL - SYY_STAAE -
19 PsiBlast_PDB 68.2429% -61 - C3 -2YXN 3.3 SYY_ECOLI
20 PsiBlast_PDB 68.0029% -66 - C3 -1WQ4 2.5 SYY_ECOLI