@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0182: (2016-03-12 )
MSKFTKLMQGYLHLIEGKNEKIKPILLETKPNFTTDSVLETASWLWLSSKINHYDREEVEPVIAFLVENWNRPEKSIWGSAENDIYLATISSVYSALLDVKNTFPKPELQQTITIIRDYCFDNLLKGDSILTGFNTRKVSTDQLLSVLPFGLFSPEDLVMVAAVGKMEQQLVQDDGVLPYSGAPRVNSFATALMALYFLEKSDQDKALHYLNMAMKMEDNDELGAIFIEINQAFRAMESEVTAHISHDPFGHENRYEQQLTERTPHYPETEMHFSAACEVISEVEPIQVELVLKEKDWTILCEKKEKNDVQIWEALVPPLEEVGEYTYYFQATMKDQTTLTSDDYKVEPIWKHWSEEAAICETEQGLMVLFKENPSSIIPVEFTVKSDELVIGLKPSFEASNVKTKSSGQLKKDDLEIIVSNNPVRLEVHFKGKLILESHKIYPALQWYTDKTGTINKVKLHLDAPKEEEYYGFGERYNALGQRGNVLDCFVYNQYRDQGTRTYIPMPFYHTNRDYSVFVDTARYTSFDLGNQLADKHTITVEINGCDTDICLLMGDIRSAVANYMKKTGKPAMVPVWALGPWMSSNNWDRESVVRNEVETTQELQIPSTVVVLEQWSDEATYYMFNDAEYDEKAPSEAYSYDEIRFPSWGRWPDPKGMVDYIHDNKMKLILWQIPIQKYLNRQQHPLKDREEAYMIEKGYVVKNPDGSPYRIPENWFTESLIMDFSNEEGKKWWFDKRQYLIDIGVDGFKTDGGEFVFGEGLQFADGRRGDEMRNLYPNDYVEAYYQFAQQNEGMTFSRAGYTGAQNFPAHWAGDERSTFDAFRRSLIAGLSAGFSGIPFWSFDFAGFNGDIPTAELFIRSAEMATFCPIMQYHAESKAEFNQDRTPWNIASRTGDDSVIPIYRHFANVRMNILPYIYNESLKCVETGLPMMRALLLDYKEDPRVSDMYDQYLFGEAMLIAPVIEDGVRSREVYLPEGTWYDFWNGTKVSGPTLRKCKADKEEIPVFVRGGKAVLCNVDATLKLGSWVGNTVEEYDTPLLKVYLDGDFTEEITDHLFGKWLVKVTENADEVIVSVQTNTASYEVEVIGTTKKVQIKKGR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GLC_A_17(4KWU)
?
[Raw transfer]



BGC_A_14(4KWU)
?
[Raw transfer]



GOL_A_6(3CTT)
MGA_HUMAN
[Raw transfer]
1 PsiBlast_PDB 94.3935% -61 - C1 -4KMQ - ? -
2 PsiBlast_PDB 94.0635% -61 - C1 -4KWU 3.0 ?
46 Fugue 79.9422% -67 - C1 -4BA0 - OL4AG_CELJU -
44 Fugue 76.5824% -58 - C1 -1XSJ - XYLS_ECOLI -
23 HHSearch 76.4425% -63 * C1 *2F2H - XYLS_ECOLI -
26 HHSearch 73.5722% -59 - C1 -2XVL - ? -
6 PsiBlast_PDB 73.3430% -72 - C1 -2F2H - XYLS_ECOLI -
7 PsiBlast_PDB 72.9329% -72 - C1 -1WE5 - XYLS_ECOLI -
8 PsiBlast_PDB 72.6724% -61 - C1 -4B9Y - OL4AG_CELJU -
22 HHSearch 72.5923% -55 - C1 -3L4Y - MGA_HUMAN -
5 PsiBlast_PDB 72.4630% -68 - C1 -1XSK - XYLS_ECOLI -
10 PsiBlast_PDB 72.3624% -61 - C1 -4BA0 - OL4AG_CELJU -
9 PsiBlast_PDB 72.2024% -61 - C1 -4B9Z - OL4AG_CELJU -
4 PsiBlast_PDB 71.8630% -64 - C1 -1XSJ - XYLS_ECOLI -
49 Fugue 71.5521% -48 - C1 -2QMJ - MGA_HUMAN -
3 PsiBlast_PDB 71.4630% -67 - C1 -1XSI - XYLS_ECOLI -
24 HHSearch 68.5621% -58 - C1 -3TOP - MGA_HUMAN -
28 HHSearch 68.3422% -60 - C1 -3NSX - ? -
25 HHSearch 68.3320% -53 - C1 -3LPP - SUIS_HUMAN -
27 HHSearch 65.5325% -59 - C1 -2G3M - AGLU_SULSO -