@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0239: (2016-03-13 )
LSIQIFNTLKREKQPFKPLKDGEVKMYVCGPTVYNYIHIGNARPIIVFDTVRRYFTYRGYDVKFVSNFTDVDDKLIRAANELKLTVPEVADRFIGAYFDDVDQLNVAKASVNPRVTENMDEIIQMISTLIEKGYAYESAGDVYFQTKKFKDYGKLSGQELSELQHGARVEYNERKQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLGDTIDIHAGGQDLVFPHHEDEIAQSEAATGKTFANYWMHNAFLNIDGEKMSKSLGNFITLHDVLKDNDPNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDDGEYVEEAHEDEWLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLAKETVSINVLREFLSMMRLFAEVLGLKLENTQTDSLDDSEVEALIEERLQARNERNFARADEIRDILKEKNIILEDTAQGTRFRRG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5CA_B_11(3C8Z)
MSHC_MYCS2
[Raw transfer]



5CA_A_12(3C8Z)
MSHC_MYCS2
[Raw transfer]



5CA_A_12(3C8Z)
MSHC_MYCS2
[Raw transfer]



AMP_B_6(3SP1)
SYC_BORBU
[Raw transfer]



AMP_A_4(3SP1)
SYC_BORBU
[Raw transfer]



CYS_B_6(1LI7)
SYC_ECOLI
[Raw transfer]



CYS_A_5(1LI7)
SYC_ECOLI
[Raw transfer]



EDO_A_6(3KFL)
?
[Raw transfer]
76 Fugue 98.0144% -81 - C3 -1U0B - SYC_ECOLI -
3 PsiBlast_PDB 97.8744% -84 - C3 -1U0B - SYC_ECOLI -
54 HHSearch 91.8345% -91 - C3 -1LI5 - SYC_ECOLI -
1 PsiBlast_PDB 91.5344% -94 - C3 -1LI5 - SYC_ECOLI -
77 Fugue 91.4044% -94 - C3 -1LI5 - SYC_ECOLI -
2 PsiBlast_PDB 91.1944% -96 - C3 -1LI7 2.8 SYC_ECOLI
21 PsiBlast_CBE 89.1744% -95 - C3 -1LI7 3.4 SYC_ECOLI
22 PsiBlast_CBE 85.1833% -87 - C3 -3SP1 4.3 SYC_BORBU
55 HHSearch 82.2533% -76 - C3 -3C8Z 6.6 MSHC_MYCS2
4 PsiBlast_PDB 82.1533% -89 - C3 -3SP1 4.1 SYC_BORBU
23 PsiBlast_CBE 75.0535% -81 - C3 -3C8Z 7.1 MSHC_MYCS2
5 PsiBlast_PDB 74.3235% -79 - C3 -3C8Z 6.6 MSHC_MYCS2
64 HHSearch 68.2019% -52 - C3 -1FFY - SYI1_STAAU -
60 HHSearch 67.0418% -61 - C3 -3H99 - SYM_ECOLI -
62 HHSearch 63.0918% -44 - C3 -2D5B - SYM_THET8 -
80 Fugue 62.7114% -49 - C3 -1RQG - SYM_PYRAB -
59 HHSearch 62.6916% -55 - C3 -2X1L - ? -
63 HHSearch 62.3117% -40 - C3 -1GAX - SYV_THETH -
70 HHSearch 62.0315% -75 - C3 -1F7U - SYRC_YEAST -
56 HHSearch 61.6015% -59 * C3 *1RQG - SYM_PYRAB -