@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0856: (2016-03-19 )
LKKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNVPNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGKPKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLIIK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2GN_A_2(3ZM6)
?
[Raw transfer]



1LG_A_2(2AM1)
?
[Raw transfer]



IGM_A_2(3ZM5)
?
[Raw transfer]



ANP_A_6(4CVM)
?
[Raw transfer]



ALA_A_2(4CVM)
?
[Raw transfer]



ALA_A_2(4CVK)
?
[Raw transfer]



2LG_A_2(2AM2)
?
[Raw transfer]



API_A_6(4CVK)
?
[Raw transfer]



ADP_A_3(3ZL8)
?
[Raw transfer]
1 PsiBlast_PDB 99.0438%-110 - C1 -3ZM5 7.7 ?
2 PsiBlast_PDB 98.5438%-108 - C1 -3ZM6 8.9 ?
3 PsiBlast_PDB 97.6137%-107 - C1 -2AM1 8.0 ?
4 PsiBlast_PDB 96.3637%-108 - C1 -2AM2 6.8 ?
8 PsiBlast_PDB 87.5630%-107 - C1 -4CVK 2.5 ?
9 PsiBlast_PDB 86.0130%-100 - C1 -4CVM 7.3 ?
10 PsiBlast_PDB 85.9528% -85 - C1 -3ZL8 8.8 ?
5 PsiBlast_PDB 76.5633% -78 - C1 -4QDI - ? -
6 PsiBlast_PDB 75.2633% -81 - C1 -4ZIY - ? -
31 HHSearch 72.7032% -12 - C1 -1GG4 - MURF_ECOLI -
7 PsiBlast_PDB 70.3932% -7 - C1 -1GG4 - MURF_ECOLI -
11 PsiBlast_PDB 68.1925% -79 - C1 -4BUB - MURE_THEMA -
38 HHSearch 65.8917% -71 * C1 *1P3D - MURC_HAEIN -
34 HHSearch 65.4922% -68 - C1 -3LK7 - MURD_STRA5 -
37 HHSearch 64.7620% -54 - C1 -2VOS - ? -
17 PsiBlast_PDB 63.2024% -44 - C1 -2F00 - MURC_ECOLI -
42 HHSearch 62.2917% -70 - C1 -3NRS - ? -
12 PsiBlast_PDB 60.7925% -66 - C1 -3LK7 - MURD_STRA5 -
14 PsiBlast_PDB 58.7422% -53 - C1 -4HV4 - MURC_YERPE -
16 PsiBlast_PDB 58.3123% -85 - C1 -1EEH - MURD_ECOLI -