@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1405: (2016-03-24 )
LELPFSGQSIIPAAHNQKDMEKILELGLTYMVMLETHVAQLKSLVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLFMIDSSACNKGVALIQKVQPDCIELLPGIIPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLW

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CIT_A_6(1VKF)
?
[Raw transfer]




CIT_C_7(1VKF)
?
[Raw transfer]




CIT_A_6(1VKF)
?
[Raw transfer]




CIT_D_8(1VKF)
?
[Raw transfer]




2 HHSearch 96.7298%-141 - C4 -3KTS - ? -
36 PsiBlast_CBE 96.5997%-140 - C4 -3KTS - ? -
21 PsiBlast_PDB 96.5097%-141 - C4 -3KTS - ? -
39 PsiBlast_CBE 96.2997%-141 - C4 -3KTS - ? -
37 PsiBlast_CBE 96.2297%-143 - C4 -3KTS - ? -
41 PsiBlast_CBE 96.0697%-142 - C4 -3KTS - ? -
35 PsiBlast_CBE 95.3797%-142 - C4 -3KTS - ? -
38 PsiBlast_CBE 95.2797%-140 - C4 -3KTS - ? -
40 PsiBlast_CBE 94.8197%-140 - C4 -3KTS - ? -
1 HHSearch 63.9233%-124 - C4 -1VKF 2.6 ?
22 PsiBlast_PDB 63.8531%-129 - C4 -1VKF 4.1 ?
43 PsiBlast_CBE 62.8732%-131 - C4 -1VKF 3.8 ?
42 PsiBlast_CBE 62.1632%-130 - C4 -1VKF 3.9 ?
44 PsiBlast_CBE 62.1132%-128 - C4 -1VKF - ? -
3 HHSearch 51.9615%-107 - C4 -1WA3 - ? -
16 HHSearch 51.0714% -97 - C4 -1UB3 - DEOC_THET8 -
11 HHSearch 50.9915%-100 - C4 -2V82 - DGOA_ECOLI -
12 HHSearch 50.1514%-122 - C4 -2EKC - TRPA_AQUAE -
9 HHSearch 49.6015%-105 - C4 -3VND - ? -
20 HHSearch 49.4616%-100 - C4 -3IGS - NANE2_SALTY -