@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1513: (2016-03-25 )
MENRIYLDHAATSPIHPEVIQTMLGAITNTYGNPSSIHYAGREARKALDEARHTIAKSIHATEKEIIFTSGGTEGDNLALIGTALAHKENGTHIITSQIEHHAVLKTCEYLETQGFEVTYLPVDEHGIVSVESVQAALRPETILVSIMYGNNEIGSIQPIAEIGALLRDQQAIFHTDAVQAYGLLNINVMELGVDLLTTSSHKINGPRGVGFLYVKNGTRLAYQMHGGEQERKRRAGTENLAGICGFSAASSIMTNERELKNEEYISFKKRMAEIWRSAELDFEVNGLEADTLPHVFSVRFPGVSIEQLLMNLDMEGIAVSSGSACTAGTVDPSHVLVALFGENHPAIQETVRISFGLGNHLEEVEMAATKISEVVTRLMKI

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLP_A_3(3A9X)
SCLY_RAT
[Raw transfer]



PLP_C_3(1ECX)
?
[Raw transfer]



PLP_D_4(1ECX)
?
[Raw transfer]



CYS_F_6(1ECX)
?
[Raw transfer]



PLP_C_3(1ECX)
?
[Raw transfer]



PLP_A_3(3VAX)
?
[Raw transfer]



PLP_B_6(3LVJ)
ISCS_ECO57
[Raw transfer]



PLP_B_4(3VAX)
?
[Raw transfer]



PLP_B_8(4EB7)
ISCS2_ARCFU
[Raw transfer]



PLP_A_6(1EG5)
?
[Raw transfer]



LPG_C_3(1I29)
SUFS_ECOLI
[Raw transfer]



PLP_B_4(3A9X)
SCLY_RAT
[Raw transfer]



PLP_A_3(3LVK)
ISCS_ECO57
[Raw transfer]



PLP_A_6(1EG5)
?
[Raw transfer]



PLP_B_7(3A9Z)
SCLY_RAT
[Raw transfer]



PLP_A_3(3A9Z)
SCLY_RAT
[Raw transfer]



PLP_B_8(3A9Y)
SCLY_RAT
[Raw transfer]



PLP_A_3(3A9Z)
SCLY_RAT
[Raw transfer]



CYS_E_5(1ECX)
?
[Raw transfer]



CSE_A_2(1KMK)
SUFS_ECOLI
[Raw transfer]
21 PsiBlast_CBE 98.9042% -83 - C2 -3LVJ 3.9 ISCS_ECO57
2 PsiBlast_PDB 98.0342% -81 - C2 -3LVK 3.4 ISCS_ECO57
1 PsiBlast_PDB 97.5642% -84 - C2 -3LVJ - ISCS_ECO57 -
63 Fugue 93.0137% -84 - C2 -4ISY - ISCSL_MYCTU -
5 PsiBlast_PDB 92.8337% -81 - C2 -4HVK - ISCS2_ARCFU -
4 PsiBlast_PDB 91.9337% -75 - C2 -4EB7 - ISCS2_ARCFU -
23 PsiBlast_CBE 91.8437% -80 - C2 -4EB5 - ISCS2_ARCFU -
3 PsiBlast_PDB 91.8237% -77 - C2 -4EB5 - ISCS2_ARCFU -
70 HHSearch 91.0836% -84 - C2 -1EG5 4.0 ?
11 PsiBlast_PDB 90.7134% -76 - C2 -3A9Z 4.0 SCLY_RAT
61 Fugue 90.6235% -85 * C2 *1ECX 3.7 ?
75 HHSearch 90.3834% -79 - C2 -3A9Z 4.0 SCLY_RAT
22 PsiBlast_CBE 90.2037% -81 - C2 -4EB7 3.1 ISCS2_ARCFU
30 PsiBlast_CBE 90.1934% -74 - C2 -3A9Y 3.2 SCLY_RAT
29 PsiBlast_CBE 89.8634% -73 - C2 -3A9Z 3.9 SCLY_RAT
31 PsiBlast_CBE 89.7034% -73 - C2 -3A9X 3.7 SCLY_RAT
24 PsiBlast_CBE 89.2338% -79 - C2 -4ISY - ISCSL_MYCTU -
9 PsiBlast_PDB 89.1035% -86 - C2 -1EG5 4.0 ?
7 PsiBlast_PDB 89.0636% -87 - C2 -1ECX 3.9 ?
27 PsiBlast_CBE 88.9836% -87 - C2 -1ECX 4.0 ?
10 PsiBlast_PDB 88.4734% -78 - C2 -3A9X 4.4 SCLY_RAT
28 PsiBlast_CBE 87.6237% -75 - C2 -3VAX 3.8 ?
71 HHSearch 85.7737% -73 - C2 -3VAX 3.8 ?