@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1587: (2016-03-26 )
MTMYAKNNTSGKDMLSLLEWNKEELTDIIKLAVAMKTNPAHYSHILSGKILGMIFDKPSTRTRVSFEAGILQLGGQAIVMSSKELQIGRGEPIKDTAHVMSEYIDAIMIRTFSHEKVEELAYHAEIPIINGLTDLHHPCQALADLMTIYEWKDQLEGIKLAYIGDGNNVCHSLLLAGAMVGIDIRLAMPKGYEVDETILAKAENLAKQSGGKIFVTEDSKLAVTDADFIYTDVWTSMGQEDENAKRLADFGEKYQVNAELVSGAKPDYHFLHCLPAHREEEVTTEIIDGIHSVIYQQAGNRLHAQKALLAAILEAK

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PSQ_F_6(1DUV)
OTC1_ECOLI
[Raw transfer]




PSQ_D_4(1DUV)
OTC1_ECOLI
[Raw transfer]




PSQ_E_5(1DUV)
OTC1_ECOLI
[Raw transfer]




PAO_D_4(1OTH)
OTC_HUMAN
[Raw transfer]




PAO_D_4(1OTH)
OTC_HUMAN
[Raw transfer]




CIR_C_16(4JQO)
OTC_VIBVU
[Raw transfer]




PAO_A_2(4A8T)
PTC_ENTFA
[Raw transfer]




CIR_B_11(4JQO)
OTC_VIBVU
[Raw transfer]




CIR_A_5(4JQO)
OTC_VIBVU
[Raw transfer]




PUW_B_9(4A8H)
PTC_ENTFA
[Raw transfer]




CP_B_10(4NF2)
OTC_BACAN
[Raw transfer]




CP_C_13(2I6U)
OTC_MYCTU
[Raw transfer]




CP_G_7(1C9Y)
OTC_HUMAN
[Raw transfer]




CP_A_4(4JFR)
OTC_VIBVU
[Raw transfer]




PUW_A_3(4A8H)
PTC_ENTFA
[Raw transfer]




CP_C_12(4NF2)
OTC_BACAN
[Raw transfer]




CP_D_4(1EP9)
OTC_HUMAN
[Raw transfer]




CP_A_9(2I6U)
OTC_MYCTU
[Raw transfer]




CP_A_5(4H31)
OTC_VIBVU
[Raw transfer]




CP_B_11(2I6U)
OTC_MYCTU
[Raw transfer]




CP_A_9(2I6U)
OTC_MYCTU
[Raw transfer]




CP_B_6(4JFR)
OTC_VIBVU
[Raw transfer]




CP_J_10(1FVO)
OTC_HUMAN
[Raw transfer]




CP_G_7(1FVO)
OTC_HUMAN
[Raw transfer]




ARG_A_6(4JHX)
OTC_VIBVU
[Raw transfer]




NVA_A_5(4NF2)
OTC_BACAN
[Raw transfer]




PE5_B_26(4H31)
OTC_VIBVU
[Raw transfer]




21 PsiBlast_CBE 96.1860%-119 - C4 -4NF2 5.0 OTC_BACAN
2 PsiBlast_PDB 96.1760%-120 - C4 -4NF2 2.9 OTC_BACAN
22 PsiBlast_CBE 96.0860%-120 - C4 -4NF2 4.9 OTC_BACAN
1 PsiBlast_PDB 93.2460%-123 - C4 -4EP1 - OTC_BACAN -
3 PsiBlast_PDB 93.0252%-117 - C4 -1PVV - OTC_PYRFU -
4 PsiBlast_PDB 91.0652%-114 - C4 -1A1S - OTC_PYRFU -
89 HHSearch 90.6952%-106 - C4 -1PVV - OTC_PYRFU -
91 HHSearch 89.8845%-112 - C4 -2I6U 4.1 OTC_MYCTU
18 PsiBlast_PDB 87.8238%-116 - C4 -4A8T 6.0 PTC_ENTFA
25 PsiBlast_CBE 87.5146%-119 - C4 -2P2G - OTC_MYCTU -
90 HHSearch 87.4748%-114 - C4 -3GD5 - OTC_GLOVI -
92 HHSearch 87.4342%-117 - C4 -3TPF - OTC_CAMJE -
67 PsiBlast_CBE 87.4338%-116 - C4 -4AM8 - PTC_ENTFA -
26 PsiBlast_CBE 87.3846%-117 - C4 -2P2G - OTC_MYCTU -
28 PsiBlast_CBE 87.3546%-114 - C4 -2I6U 4.2 OTC_MYCTU
66 PsiBlast_CBE 87.2638%-118 - C4 -4AM8 - PTC_ENTFA -
7 PsiBlast_PDB 87.1146%-114 - C4 -2I6U 4.1 OTC_MYCTU
35 PsiBlast_CBE 87.0038%-116 - C4 -4A8P - PTC_ENTFA -
20 PsiBlast_PDB 86.9538%-113 - C4 -4A8P - PTC_ENTFA -
29 PsiBlast_CBE 86.8946%-111 - C4 -2I6U 4.5 OTC_MYCTU
30 PsiBlast_CBE 86.8639%-113 - C4 -1FVO 3.8 OTC_HUMAN
12 PsiBlast_PDB 86.5639%-109 - C4 -1OTH 7.5 OTC_HUMAN
13 PsiBlast_PDB 86.5139%-110 - C4 -1C9Y 4.8 OTC_HUMAN
14 PsiBlast_PDB 86.3839%-111 - C4 -1EP9 5.0 OTC_HUMAN
36 PsiBlast_CBE 86.1438%-111 - C4 -4A8H 6.2 PTC_ENTFA
15 PsiBlast_PDB 86.0039%-109 - C4 -1FVO 3.8 OTC_HUMAN
94 HHSearch 85.7540%-105 - C4 -1OTH 7.3 OTC_HUMAN
19 PsiBlast_PDB 85.3838%-111 - C4 -4A8H 6.2 PTC_ENTFA
56 PsiBlast_CBE 84.1038%-110 - C4 -4JHX 2.8 OTC_VIBVU
58 PsiBlast_CBE 83.7338%-110 - C4 -4JFR 4.6 OTC_VIBVU
83 PsiBlast_CBE 82.9738%-112 - C4 -1DUV 6.9 OTC1_ECOLI
51 PsiBlast_CBE 82.9038%-108 - C4 -4JQO 3.8 OTC_VIBVU
81 PsiBlast_CBE 82.8938%-110 - C4 -1DUV 6.7 OTC1_ECOLI
59 PsiBlast_CBE 82.7738%-109 - C4 -4JFR 4.7 OTC_VIBVU
53 PsiBlast_CBE 82.4038%-109 - C4 -4JQO 3.8 OTC_VIBVU
62 PsiBlast_CBE 82.2638%-109 - C4 -4H31 5.2 OTC_VIBVU
61 PsiBlast_CBE 82.2038%-107 - C4 -4H31 2.6 OTC_VIBVU
82 PsiBlast_CBE 82.0338%-110 - C4 -1DUV 6.8 OTC1_ECOLI
52 PsiBlast_CBE 81.7438%-108 - C4 -4JQO 3.7 OTC_VIBVU