@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1808: (2016-03-29 )
MTKIAFVFPGQGAQKVGMGQDVAAEYPEAKKIYDDADERLGFSITEIITEGPIELLTKSENAQPALVSTSVAILRALETYGVKADYVAGHSLGEYSALVAGGFLEASDAIYLVRKRGELMEAAVPNGAGAMAAVLGVDRETLKTITEEVTKEGDAVQLANLNCPGQIVISGTTAGVEKAGEKAKESGAKRVLPLAVSGPFHSSLMEPAALAFRDVLAEVKISDGQIPVVNNVDAKETTDKSEISDKLIKQIYSPVLWEDIVEELIKNGVDTFVEIGSGKVLAGLIKKINRDVTVLSAGDAESVKSVAATLKGE

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_B_2(2G1H)
FABD_ECOLI
[Raw transfer]



COZ_B_2(2G2Z)
FABD_ECOLI
[Raw transfer]



NHE_A_2(3R97)
?
[Raw transfer]



GOL_A_2(3K89)
?
[Raw transfer]



GOL_A_2(3K89)
?
[Raw transfer]



CXS_A_14(3HJV)
?
[Raw transfer]



GLY_A_2(3TQE)
?
[Raw transfer]



GLY_A_2(3TQE)
?
[Raw transfer]



ACY_A_4(1NM2)
?
[Raw transfer]



ACY_A_4(1NM2)
?
[Raw transfer]



ACY_A_2(2QC3)
FABD_MYCTU
[Raw transfer]



ACY_A_3(1NM2)
?
[Raw transfer]
25 HHSearch 94.4548% -90 - C1 -3IM9 - FABD_STAAM -
10 PsiBlast_PDB 93.9042% -97 - C1 -3PTW - ? -
1 PsiBlast_PDB 93.7648% -90 - C1 -3IM9 - FABD_STAAM -
24 HHSearch 93.2142% -98 - C1 -3PTW - ? -
31 HHSearch 91.1544% -93 - C1 -2CUY - ? -
23 HHSearch 89.4743% -96 - C1 -3QAT - ? -
15 PsiBlast_PDB 88.9643% -89 - C1 -2CUY - ? -
7 PsiBlast_PDB 88.8145% -91 - C1 -2G2O - FABD_ECOLI -
29 HHSearch 88.6738% -93 * C1 *3TQE 3.2 ?
6 PsiBlast_PDB 88.4845% -90 - C1 -2G1H 3.1 FABD_ECOLI
3 PsiBlast_PDB 87.8644% -95 - C1 -3EZO - ? -
5 PsiBlast_PDB 87.7945% -90 - C1 -1MLA - FABD_ECOLI -
9 PsiBlast_PDB 87.7545% -89 - C1 -2G2Z 5.3 FABD_ECOLI
26 HHSearch 87.6145% -92 - C1 -1MLA - FABD_ECOLI -
8 PsiBlast_PDB 87.0645% -90 - C1 -2G2Y - FABD_ECOLI -
21 PsiBlast_CBE 86.6343% -92 - C1 -3QAT - ? -
2 PsiBlast_PDB 86.2643% -92 - C1 -3QAT - ? -
11 PsiBlast_PDB 86.0343% -92 - C1 -3IM8 - ? -
16 PsiBlast_PDB 85.8938% -94 - C1 -3TQE 3.2 ?
12 PsiBlast_PDB 85.7744% -87 - C1 -3H0P - FABD_SALTY -
33 HHSearch 84.4939% -91 - C1 -3K89 2.7 ?
4 PsiBlast_PDB 84.3143% -80 - C1 -3HJV 2.5 ?
13 PsiBlast_PDB 79.3341% -89 - C1 -3K89 2.7 ?
14 PsiBlast_PDB 76.8741% -90 - C1 -3R97 2.6 ?
32 HHSearch 74.4430% -78 - C1 -1NM2 2.8 ?
22 PsiBlast_CBE 69.2131% -78 - C1 -1NM2 3.1 ?
35 HHSearch 67.6730% -75 - C1 -2QC3 3.9 FABD_MYCTU