@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1995: (2016-03-30 )
MTIAKMIDHTALKPDTTKEQILTLTKEAREYGFASVCVNPTWVKLSAEQLAGAESVVCTVIGFPLGANTPEVKAFEVKDAIQNGAKEVDMVINIGALKDKDDELVERDIRAVVDVAKGKALVKVIIETCLLTDEEKVRACEIAVKAGTDFVKTSTGFSTGGATAEDIALMRKTVGPNIGVKASGGVRTKEDVEKMIEAGATRIGASAGVAIVSGEKPAKPDNY

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HPD_B_6(1UB3)
DEOC_THET8
[Raw transfer]



HPD_A_5(1UB3)
DEOC_THET8
[Raw transfer]



HPD_D_8(1UB3)
DEOC_THET8
[Raw transfer]



HPD_C_7(1UB3)
DEOC_THET8
[Raw transfer]



HPD_A_5(1UB3)
DEOC_THET8
[Raw transfer]



GOL_A_7(3R13)
DEOC_THEMA
[Raw transfer]



CIT_A_3(3R12)
DEOC_THEMA
[Raw transfer]



CIT_A_3(3R12)
DEOC_THEMA
[Raw transfer]



HPD_B_4(1JCL)
DEOC_ECOLI
[Raw transfer]



HPD_A_3(1JCL)
DEOC_ECOLI
[Raw transfer]



HPD_A_3(1JCL)
DEOC_ECOLI
[Raw transfer]



HPD_B_4(1JCJ)
DEOC_ECOLI
[Raw transfer]



HPD_A_3(1JCJ)
DEOC_ECOLI
[Raw transfer]



UNL_A_4(3NDO)
?
[Raw transfer]



UNL_B_7(3NDO)
?
[Raw transfer]



UNL_D_12(3NG3)
DEOC_MYCA1
[Raw transfer]



UNL_B_7(3NG3)
DEOC_MYCA1
[Raw transfer]



UNL_C_9(3NG3)
DEOC_MYCA1
[Raw transfer]



UNL_A_4(3NDO)
?
[Raw transfer]



UNL_A_6(3NG3)
DEOC_MYCA1
[Raw transfer]
22 PsiBlast_CBE 97.4563% -94 - C2 -3NGJ - ? -
23 PsiBlast_CBE 97.1163% -95 - C2 -3NGJ - ? -
1 PsiBlast_PDB 97.0263% -93 - C2 -3NGJ - ? -
48 HHSearch 96.7761% -94 - C2 -3NGJ - ? -
21 PsiBlast_CBE 96.3863% -95 - C2 -3NGJ - ? -
46 HHSearch 93.4956% -89 - C2 -3R12 3.0 DEOC_THEMA
3 PsiBlast_PDB 90.9157% -90 - C2 -3R13 1.9 DEOC_THEMA
2 PsiBlast_PDB 90.8857% -91 - C2 -3R12 3.0 DEOC_THEMA
24 PsiBlast_CBE 87.9145% -88 - C2 -3OA3 - ? -
45 HHSearch 86.6347% -89 - C2 -3OA3 - ? -
4 PsiBlast_PDB 86.3945% -92 - C2 -3OA3 - ? -
6 PsiBlast_PDB 85.5944% -83 - C2 -1UB3 3.8 DEOC_THET8
5 PsiBlast_PDB 85.0644% -85 - C2 -1J2W - DEOC_THET8 -
27 PsiBlast_CBE 84.7344% -87 - C2 -1UB3 3.6 DEOC_THET8
25 PsiBlast_CBE 84.7344% -84 - C2 -1UB3 4.1 DEOC_THET8
47 HHSearch 84.6043% -84 - C2 -1UB3 3.8 DEOC_THET8
26 PsiBlast_CBE 84.1244% -85 - C2 -1UB3 4.0 DEOC_THET8
32 PsiBlast_CBE 83.0146% -88 - C2 -3NG3 2.9 DEOC_MYCA1
29 PsiBlast_CBE 82.7842% -89 - C2 -3NDO 2.9 ?
8 PsiBlast_PDB 82.1542% -89 - C2 -3NDO 2.9 ?
49 HHSearch 81.7641% -83 - C2 -3NDO 2.9 ?
30 PsiBlast_CBE 80.8246% -86 - C2 -3NG3 3.3 DEOC_MYCA1
31 PsiBlast_CBE 80.7746% -89 - C2 -3NG3 3.2 DEOC_MYCA1
9 PsiBlast_PDB 79.7746% -88 - C2 -3NG3 3.0 DEOC_MYCA1
62 Fugue 75.9431% -80 - C2 -1JCL 2.6 DEOC_ECOLI
34 PsiBlast_CBE 74.1935% -83 - C2 -1JCL 1.9 DEOC_ECOLI
15 PsiBlast_PDB 74.1634% -84 - C2 -1JCJ 3.1 DEOC_ECOLI
35 PsiBlast_CBE 74.1034% -83 - C2 -1JCJ 3.1 DEOC_ECOLI
13 PsiBlast_PDB 73.7835% -84 - C2 -1JCL 2.0 DEOC_ECOLI