@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2601: (2016-04-05 )
VAESFVRLEHVFYKYEDTEKYAVKDVSISAQKGEWVALVGHNGSGKSTIAKLLNGLLFPEDGLIKIGHFVLSEKNIWEIRRQVGMVFQNPDNQFVGATVQDDVAFGLENHGVPHDTMVERVESALNEVGMQSYALHEPARLSGGQKQRVAIAGVLALQPDVIILDEATSMLDPRGRAEVMETIRIMREQEDITVISITHDLDEVLFADRVIVMNKGEIHSEGTPKEIFQQADAMREIGLGVPFIIELQEKLVAGGFETGSTVLSEGALLDQLWKLNSNN

Atome Classification :

(53 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




ANP_A_6(4ZIR)
ECFA2_THEMA
[Raw transfer]




ADP_C_11(4HLU)
ECFA1_THEMA
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




AGS_A_3(4S0F)
?
[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ADP_B_9(4HLU)
ECFA2_THEMA
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ADP_A_5(4HLU)
ECFA2_THEMA
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AGS_B_4(4S0F)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




IPA_A_6(3TIF)
Y796_METJA
[Raw transfer]




1 PsiBlast_PDB 94.2548% -98 - C1 -4HUQ - ECFA1_LACBA -
2 PsiBlast_PDB 92.1148% -89 - C1 -4HZU - ECFA1_LACBA -
21 PsiBlast_CBE 86.1740%-109 - C1 -4MKI 2.6 ECFA2_CALS4
3 PsiBlast_PDB 85.7340%-107 - C1 -4MKI - ECFA2_CALS4 -
110 HHSearch 76.1339%-105 - C1 -3GFO - ECFA3_CLOP1 -
4 PsiBlast_PDB 74.9640%-106 - C1 -3GFO - ECFA3_CLOP1 -
122 Fugue 74.3730%-106 - C1 -3TUZ - METN_ECOLI -
107 HHSearch 73.9233%-104 - C1 -3TUI - METN_ECOLI -
119 HHSearch 72.5032%-103 * C1 *2OLJ - ? -
129 Fugue 70.4528% -84 - C1 -4F4C - PGP1_CAEEL -
12 PsiBlast_PDB 70.3932%-102 - C1 -2IT1 - ? -
36 PsiBlast_CBE 69.8332%-105 - C1 -2IT1 - ? -
124 Fugue 69.3626% -96 - C1 -1OXS - ? -
101 HHSearch 68.6638% -92 - C1 -1Z47 - ? -
23 PsiBlast_CBE 68.0335% -95 - C1 -4HLU 5.7 ECFA1_THEMA
106 HHSearch 67.9527% -94 - C1 -1OXX - ? -
54 PsiBlast_CBE 67.0333%-105 - C1 -1XEF 6.7
123 Fugue 67.0031% -82 - C1 -1Z47 - ? -
52 PsiBlast_CBE 66.2133%-105 - C1 -2FGJ - HLYBP_ECOLX -
57 PsiBlast_CBE 66.1033%-108 - C1 -1XEF 6.1 HLYBP_ECOLX
51 PsiBlast_CBE 65.8233%-106 - C1 -2FGJ 6.9 HLYBP_ECOLX
56 PsiBlast_CBE 65.6433%-104 - C1 -1XEF 6.6 HLYBP_ECOLX
49 PsiBlast_CBE 65.4933%-107 - C1 -2FGJ 6.6
39 PsiBlast_CBE 65.1634%-105 - C1 -2FF7 6.1
76 PsiBlast_CBE 64.7033%-102 - C1 -3TIF 3.4 Y796_METJA
55 PsiBlast_CBE 64.5133%-106 - C1 -1XEF 6.8 HLYBP_ECOLX
38 PsiBlast_CBE 64.2337% -97 - C1 -4YMU 4.2 ?
46 PsiBlast_CBE 64.0633%-110 - C1 -2FGK 7.3 HLYBP_ECOLX
44 PsiBlast_CBE 63.6733%-110 - C1 -2FGK 6.4 HLYBP_ECOLX
17 PsiBlast_PDB 63.5137% -90 - C1 -4YMV 3.4 ?
16 PsiBlast_PDB 63.3937% -92 - C1 -4YMU 4.6 ?
10 PsiBlast_PDB 63.0337% -80 - C1 -4U00 4.4 ?
53 PsiBlast_CBE 63.0133%-105 - C1 -2FFA 6.1
37 PsiBlast_CBE 62.8437% -92 - C1 -4YMV 3.4 ?
43 PsiBlast_CBE 62.6833%-111 - C1 -2FGK 7.1
45 PsiBlast_CBE 62.6333%-110 - C1 -2FGK 6.8 HLYBP_ECOLX
60 PsiBlast_CBE 62.4435%-100 - C1 -3C4J 3.3 ?
58 PsiBlast_CBE 61.7635%-100 - C1 -3C41 3.5 ?
68 PsiBlast_CBE 61.5935% -96 - C1 -2OLK 4.1 ?
63 PsiBlast_CBE 61.2035% -98 - C1 -2Q0H 3.3 ?
25 PsiBlast_CBE 60.9536% -90 - C1 -4HLU 5.7 ECFA2_THEMA
73 PsiBlast_CBE 60.7235% -97 - C1 -2OLJ 3.8 ?
59 PsiBlast_CBE 60.7235% -95 - C1 -3C41 4.7 ?
70 PsiBlast_CBE 60.6435% -96 - C1 -2OLK 4.0 ?
24 PsiBlast_CBE 60.0436% -91 - C1 -4HLU 6.2 ECFA2_THEMA
71 PsiBlast_CBE 59.7735% -96 - C1 -2OLK 3.8 ?
69 PsiBlast_CBE 59.2735% -97 - C1 -2OLK 4.1 ?
72 PsiBlast_CBE 58.9635% -93 - C1 -2OLJ 3.6 ?
61 PsiBlast_CBE 57.9535% -91 - C1 -3C4J 4.4 ?
26 PsiBlast_CBE 57.6236% -92 - C1 -4ZIR 5.8 ECFA2_THEMA
42 PsiBlast_CBE 57.5434% -93 - C1 -3B5J 6.4
82 PsiBlast_CBE 51.5632% -96 - C1 -4S0F 2.6 ?
83 PsiBlast_CBE 49.6432% -93 - C1 -4S0F 2.5 ?