@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2656: (2016-04-06 )
MPTINQLVRKPRQSKIKKSTSPALNKGLNSFKRELTDVNSPQKRGVCTRVGTMTPKKPNSALRKYARVRLSNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVENRGQSRSKYGTKKPKK

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_W_22(4B3R)
RS12_THET8
[Raw transfer]
-
NACID_W_22(4AQY)
RS12_THET8
[Raw transfer]
-
NACID_X_2(2UUB)
RS12_THET8
[Raw transfer]
-
CHAIN_W_22(3T1Y)
RS12_THET8
[Raw transfer]
-
NACID_X_2(2VQE)
RS12_THET8
[Raw transfer]
-
NACID_X_2(2UUC)
RS12_THET8
[Raw transfer]
-
CHAIN_X_2(2UU9)
RS12_THET8
[Raw transfer]
-
CHAIN_Z_2(1N34)
RS12_THET8
[Raw transfer]
-
NACID_X_2(2UUA)
RS12_THET8
[Raw transfer]
-
NACID_W_22(4B3T)
RS12_THET8
[Raw transfer]
-
NACID_W_22(4B3M)
RS12_THET8
[Raw transfer]
-
NACID_X_2(2VQE)
RS12_THET8
[Raw transfer]
-
CHAIN_X_22(4JV5)
RS12_THET8
[Raw transfer]
-
CHAIN_X_22(4K0K)
RS12_THET8
[Raw transfer]
-
78 Fugue 91.2576% -60 - C2 -1FJG - RS12_THET8 -
15 PsiBlast_PDB 89.1669% -76 - C2 -4K0K 3.6 RS12_THET8
68 HHSearch 88.9476% -58 * C2 *2VQE Error RS12_THET8
11 PsiBlast_PDB 88.7769% -71 - C2 -4OX9 - RS12_THET8 -
20 PsiBlast_PDB 88.6469% -60 - C2 -4GKJ - RS12_THET8 -
14 PsiBlast_PDB 88.2669% -63 - C2 -4JYA - RS12_THET8 -
13 PsiBlast_PDB 88.2269% -71 - C2 -4JV5 3.7 RS12_THET8
12 PsiBlast_PDB 88.0269% -71 - C2 -4KHP - RS12_THET8 -
43 PsiBlast_CBE 87.7968% -75 - C2 -1N34 Error RS12_THET8
27 PsiBlast_CBE 87.2568% -62 - C2 -3T1Y Error RS12_THET8
19 PsiBlast_PDB 87.0869% -61 - C2 -3IZZ - ? -
25 PsiBlast_CBE 86.8368% -72 - C2 -4B3R Error RS12_THET8
59 PsiBlast_CBE 86.8067% -73 - C2 -4JI3 - RS12_THET8 -
30 PsiBlast_CBE 86.7868% -72 - C2 -4AQY Error RS12_THET8
23 PsiBlast_CBE 86.6368% -72 - C2 -4B3T Error RS12_THET8
26 PsiBlast_CBE 86.2968% -75 - C2 -4B3M Error RS12_THET8
37 PsiBlast_CBE 86.2668% -71 - C2 -2UUA Error RS12_THET8
1 PsiBlast_PDB 86.1468% -81 - C2 -3DEG - RS12_ECOLI -
57 PsiBlast_CBE 86.0867% -71 - C2 -4JI8 - RS12_THET8 -
10 PsiBlast_PDB 85.9968% -60 - C2 -3J0E - RS12_ECOLI -
36 PsiBlast_CBE 85.9468% -71 - C2 -2UUB Error RS12_THET8
35 PsiBlast_CBE 85.4868% -64 - C2 -2UUC Error RS12_THET8
32 PsiBlast_CBE 85.2068% -62 - C2 -2VQE Error RS12_THET8
38 PsiBlast_CBE 84.7568% -67 - C2 -2UU9 Error RS12_THET8