@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv1436: (2016-05-01 )
MTVRVGINGFGRIGRNFYRALLAQQEQGTADVEVVAANDITDNSTLAHLLKFDSILGRLPCDVGLEGDDTIVVGRAKIKALAVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATDEDITIVLGVNDDKYDGSQNIISNASCTTNCLAPLAKVLDDEFGIVKGLMTTIHAYTQDQNLQDGPHKDLRRARAAALNIVPTSTGAAKAIGLVMPQLKGKLDGYALRVPIPTGSVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVIDDQAKVVSWYDNEWGYSNRLVDLVTLVGKSL

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_O_12(1RM4)
G3PA_SPIOL
[Raw transfer]




NDP_O_12(1RM4)
G3PA_SPIOL
[Raw transfer]




NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]




NAD_B_4(2EP7)
G3P_AQUAE
[Raw transfer]




NAD_B_4(3L0D)
?
[Raw transfer]




NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]




NAD_A_3(4BOY)
?
[Raw transfer]




NAD_A_3(4LSM)
?
[Raw transfer]




NAD_A_3(3CPS)
?
[Raw transfer]




NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]




NAD_O_12(1NBO)
G3PA_SPIOL
[Raw transfer]




NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]




NAD_Q_15(1HDG)
G3P_THEMA
[Raw transfer]




NAD_A_13(1NBO)
G3PA_SPIOL
[Raw transfer]




NAD_O_3(3H9E)
G3PT_HUMAN
[Raw transfer]




NAD_B_14(1NBO)
G3PA_SPIOL
[Raw transfer]




NAD_E_5(1VC2)
?
[Raw transfer]




NDP_A_13(1RM4)
G3PA_SPIOL
[Raw transfer]




NAD_A_3(3L0D)
?
[Raw transfer]




NDP_B_14(1RM4)
G3PA_SPIOL
[Raw transfer]




NAD_A_3(3PYM)
G3P3_YEAST
[Raw transfer]




NDP_O_15(1RM3)
G3PA_SPIOL
[Raw transfer]




NDP_A_16(1RM3)
G3PA_SPIOL
[Raw transfer]




NDP_Y_25(1JN0)
G3PA_SPIOL
[Raw transfer]




NDP_O_14(1RM5)
G3PA_SPIOL
[Raw transfer]




NDP_B_17(1RM3)
G3PA_SPIOL
[Raw transfer]




NDP_B_16(1RM5)
G3PA_SPIOL
[Raw transfer]




NDP_A_15(1RM5)
G3PA_SPIOL
[Raw transfer]




106 Fugue 94.3060% -88 - C2 -1CER - G3P_THEAQ -
59 PsiBlast_CBE 93.3660% -92 - C2 -1CER - G3P_THEAQ -
56 PsiBlast_CBE 93.3260% -92 - C2 -1CER - G3P_THEAQ -
118 HHSearch 93.2755% -90 - C2 -1RM4 8.2 G3PA_SPIOL
133 HHSearch 92.9261% -87 * C2 *3CMC - G3P_GEOSE -
61 PsiBlast_CBE 92.9160% -90 - C2 -1CER - G3P_THEAQ -
64 PsiBlast_CBE 92.9056% -87 - C2 -3DOC - ? -
117 HHSearch 92.5853% -91 - C2 -2B4R - ? -
58 PsiBlast_CBE 92.5760% -90 - C2 -1CER - G3P_THEAQ -
16 PsiBlast_PDB 92.5656% -90 - C2 -3DOC - ? -
15 PsiBlast_PDB 92.5560% -91 - C2 -1CER - G3P_THEAQ -
129 HHSearch 92.5060% -86 - C2 -2EP7 9.2 G3P_AQUAE
60 PsiBlast_CBE 92.4360% -91 - C2 -1CER - G3P_THEAQ -
66 PsiBlast_CBE 92.3453% -89 - C2 -3L0D 9.0 ?
45 PsiBlast_CBE 92.3258% -87 - C2 -1DBV - G3P_GEOSE -
63 PsiBlast_CBE 92.2856% -87 - C2 -3DOC - ? -
121 HHSearch 92.2057% -89 - C2 -3DOC - ? -
123 HHSearch 92.1458% -87 - C2 -1HDG 9.1 G3P_THEMA
57 PsiBlast_CBE 92.0960% -91 - C2 -1CER - G3P_THEAQ -
104 PsiBlast_CBE 92.0854% -93 - C2 -2PKR - G3PA_SPIOL -
86 PsiBlast_CBE 92.0554% -92 - C2 -1RM4 8.2 G3PA_SPIOL
11 PsiBlast_PDB 91.9360% -85 - C2 -1VC2 8.5 ?
17 PsiBlast_PDB 91.8753% -88 - C2 -3L0D 8.3 ?
79 PsiBlast_CBE 91.5754% -93 - C2 -1RM5 7.8 G3PA_SPIOL
14 PsiBlast_PDB 91.5458% -82 - C2 -1HDG 9.1 G3P_THEMA
131 HHSearch 91.5252% -86 - C2 -4BOY 8.4 ?
126 HHSearch 91.4953% -95 - C2 -3PYM 8.3 G3P3_YEAST
48 PsiBlast_CBE 91.3957% -87 - C2 -2EP7 9.2 G3P_AQUAE
80 PsiBlast_CBE 91.2654% -93 - C2 -1RM5 7.8 G3PA_SPIOL
90 PsiBlast_CBE 91.0254% -94 - C2 -1NBO 8.5 G3PA_SPIOL
81 PsiBlast_CBE 90.9554% -94 - C2 -1RM5 7.7 G3PA_SPIOL
94 PsiBlast_CBE 90.9354% -93 - C2 -1RM3 9.0 G3PA_SPIOL
55 PsiBlast_CBE 90.9358% -82 - C2 -1HDG 9.4 G3P_THEMA
10 PsiBlast_PDB 90.9157% -85 - C2 -2EP7 9.2 G3P_AQUAE
88 PsiBlast_CBE 90.8954% -92 - C2 -1RM4 6.9 G3PA_SPIOL
92 PsiBlast_CBE 90.0054% -90 - C2 -1RM3 8.3 G3PA_SPIOL
87 PsiBlast_CBE 89.8454% -92 - C2 -1RM4 8.5 G3PA_SPIOL
93 PsiBlast_CBE 89.7454% -90 - C2 -1RM3 7.8 G3PA_SPIOL
125 HHSearch 89.6450% -92 - C2 -3CPS 9.0 ?
89 PsiBlast_CBE 89.4254% -89 - C2 -1NBO 9.5 G3PA_SPIOL
91 PsiBlast_CBE 89.3654% -91 - C2 -1NBO 8.9 G3PA_SPIOL
127 HHSearch 89.2049% -92 - C2 -4LSM 9.0 ?
20 PsiBlast_PDB 88.7855% -88 - C2 -1JN0 6.8 G3PA_SPIOL
134 HHSearch 87.9848% -90 - C2 -3H9E 9.0 G3PT_HUMAN