@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0530: (2016-01-08 )
MADALDSLRLMRTQERPAQVFVRGQGSWLWDSDGRAFLDFTQGLAVNCLGHSPSVLVQALARQARELVSAGPGLLNRPVLALAQRLCLATGSDQAYFLTSGAEANEAAIALARKWGRLHRGGAQRIVSTVNSIHGRTPGTLTACGKPAQHGLEGFARVPFNDLDAMAAAIDEETVAVMLEPVQGDAGVIPATLDYLRGIERLCRQRGVLLILDEVQTGIGRCGALLAEELYGVRADIVTLGKGLGAGVPLSALLARGNACCFEPGDQLGTHHGNALMTAAGLAVLNTVLEPGFLEQVREQGTHLRDGLARVARRYGHGPLRGQGLFWGLPLIGQRAPAVVRAAFGEGLLINAPQPHCLRFSPALTVSRANVDEMLRRLERALARVANRHEEVA

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NMA_A_4(1D7V)
DGDA_BURCE
[Raw transfer]




P00_B_18(4JEZ)
ARGD_SALTY
[Raw transfer]




P00_B_19(4JEW)
ARGD_SALTY
[Raw transfer]




POI_D_4(1WKG)
ARGD_THET8
[Raw transfer]




PPE_D_4(1WKH)
ARGD_THET8
[Raw transfer]




PLP_B_13(4JEY)
ARGD_SALTY
[Raw transfer]




PLP_A_3(2ORD)
ARGD_THEMA
[Raw transfer]




PLP_B_9(4JF1)
ARGD_SALTY
[Raw transfer]




LCS_A_4(1D7U)
DGDA_BURCE
[Raw transfer]




PFM_A_5(2OAT)
OAT_HUMAN
[Raw transfer]




PLP_A_4(1ZOB)
DGDA_BURCE
[Raw transfer]




PLP_A_4(2DKB)
DGDA_BURCE
[Raw transfer]




PLP_A_4(1DKA)
DGDA_BURCE
[Raw transfer]




PLP_A_4(4PPM)
?
[Raw transfer]




PLP_A_4(1DGD)
DGDA_BURCE
[Raw transfer]




PLP_A_4(1DGE)
DGDA_BURCE
[Raw transfer]




PLP_B_6(4PPM)
?
[Raw transfer]




PLP_A_3(2EO5)
?
[Raw transfer]




PLP_B_4(1VEF)
ARGD_THET8
[Raw transfer]




PLP_A_3(1VEF)
ARGD_THET8
[Raw transfer]




EDO_A_7(4JEY)
ARGD_SALTY
[Raw transfer]




94 HHSearch 93.0840%-105 - C1 -2ORD 4.5 ARGD_THEMA
1 PsiBlast_PDB 91.9539%-104 - C1 -2E54 - ARGD_THEMA -
2 PsiBlast_PDB 91.0739%-105 - C1 -2ORD - ARGD_THEMA -
30 PsiBlast_CBE 88.3239%-106 - C1 -4ADB - ASTC_ECOLI -
28 PsiBlast_CBE 87.3839%-104 - C1 -4ADB - ASTC_ECOLI -
5 PsiBlast_PDB 87.2039%-105 - C1 -4ADC - ASTC_ECOLI -
29 PsiBlast_CBE 86.6939%-103 - C1 -4ADB - ASTC_ECOLI -
22 PsiBlast_CBE 86.6639%-103 - C1 -4ADD - ASTC_ECOLI -
4 PsiBlast_PDB 86.3739%-103 - C1 -4ADB - ASTC_ECOLI -
6 PsiBlast_PDB 86.1339%-101 - C1 -4ADD - ASTC_ECOLI -
25 PsiBlast_CBE 85.9739%-103 - C1 -4ADC - ASTC_ECOLI -
3 PsiBlast_PDB 85.7537% -99 - C1 -2EH6 - ARGD_AQUAE -
23 PsiBlast_CBE 85.4039%-103 - C1 -4ADD - ASTC_ECOLI -
24 PsiBlast_CBE 84.7239%-105 - C1 -4ADD - ASTC_ECOLI -
21 PsiBlast_CBE 84.4137%-101 - C1 -2EH6 - ARGD_AQUAE -
27 PsiBlast_CBE 84.2139%-105 - C1 -4ADC - ASTC_ECOLI -
26 PsiBlast_CBE 84.1139%-103 - C1 -4ADC - ASTC_ECOLI -
85 HHSearch 83.5828%-114 - C1 -1Z7D - OAT_PLAYO -
7 PsiBlast_PDB 82.5339%-102 - C1 -4ADE - ASTC_ECOLI -
13 PsiBlast_PDB 80.9735%-102 - C1 -4JEZ - ARGD_SALTY -
34 PsiBlast_CBE 79.3635% -99 - C1 -4JEW 4.7 ARGD_SALTY
35 PsiBlast_CBE 78.9135%-102 - C1 -4JEZ 2.4 ARGD_SALTY
36 PsiBlast_CBE 78.1735% -98 - C1 -4JEY 4.0 ARGD_SALTY
37 PsiBlast_CBE 76.3334%-100 - C1 -4JF1 4.0 ARGD_SALTY
46 PsiBlast_CBE 75.9234% -97 - C1 -2DKB 3.3 DGDA_BURCE
87 HHSearch 75.9134%-100 * C1 *1VEF 3.1 ARGD_THET8
86 HHSearch 73.8430%-102 - C1 -2OAT 5.3 OAT_HUMAN
44 PsiBlast_CBE 73.2134% -99 - C1 -1DGD 3.2 DGDA_BURCE
54 PsiBlast_CBE 72.8434% -99 - C1 -1DKA 3.6 DGDA_BURCE
43 PsiBlast_CBE 72.0534% -98 - C1 -1DGE 3.7 DGDA_BURCE
79 Fugue 71.9634%-101 - C1 -1D7U 4.5 DGDA_BURCE
40 PsiBlast_CBE 71.5934% -97 - C1 -1VEF 3.4 ARGD_THET8
48 PsiBlast_CBE 71.4034% -97 - C1 -1ZOB 2.6 DGDA_BURCE
38 PsiBlast_CBE 71.2934% -94 - C1 -1WKH 6.1 ARGD_THET8
41 PsiBlast_CBE 71.0434% -99 - C1 -1D7V 4.7 DGDA_BURCE
107 HHSearch 70.3232% -99 - C1 -2EO5 3.6 ?
39 PsiBlast_CBE 67.6934% -93 - C1 -1WKG 4.7 ARGD_THET8
63 PsiBlast_CBE 50.1433%-102 - C1 -4PPM 3.0 ?
64 PsiBlast_CBE 48.1433% -97 - C1 -4PPM 3.5 ?