@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0905: (2016-01-24 )
MLILTRRVGETLMVGDDVTVTVLGVKGNQVRIGVNAPKEVAVHREEIYQRIQKEKDQEPNH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_B_2(2MFF)
?
[Raw transfer]
-
CHAIN_B_2(2MFC)
?
[Raw transfer]
-
CHAIN_B_2(2MFE)
?
[Raw transfer]
-
CHAIN_B_2(2MFH)
?
[Raw transfer]
-
CHAIN_B_2(2MFG)
?
[Raw transfer]
-
NACID_D_2(2JPP)
?
[Raw transfer]
-
NACID_C_1(2JPP)
?
[Raw transfer]
-
NACID_D_2(2JPP)
?
[Raw transfer]
-
NACID_D_2(2JPP)
?
[Raw transfer]
-
14 PsiBlast_CBE 77.3876%-158 - C5 -2MFF Error ?
16 PsiBlast_CBE 76.0876%-161 - C5 -2MFC Error ?
4 PsiBlast_PDB 75.9176%-156 - C5 -2JPP 7.4 ?
3 PsiBlast_PDB 75.3583% -31 - C- -2BTI - CSRA_PECAS -
15 PsiBlast_CBE 74.9476%-151 - C5 -2MFE Error ?
19 HHSearch 74.4468%-153 - C5 -2JPP 7.4 ?
13 PsiBlast_CBE 73.7176%-163 - C5 -2MFG Error ?
17 PsiBlast_CBE 73.6376%-148 - C5 -2JPP 7.0 ?
12 PsiBlast_CBE 73.4776%-164 - C5 -2MFH Error ?
11 PsiBlast_CBE 72.8283% -62 - C- -2BTI - CSRA_PECAS -
6 PsiBlast_PDB 67.2433%-130 - C5 -4KJI - ? -
7 PsiBlast_PDB 66.9433%-139 - C5 -4KRW - ? -
18 PsiBlast_CBE 64.7033%-137 - C5 -4KJI - ? -
1 PsiBlast_PDB 62.5198% -45 - C5 -1VPZ - CSRA_PSEAE -
20 HHSearch 62.40100% -16 - C5 -1VPZ - CSRA_PSEAE -
5 PsiBlast_PDB 61.6943%-126 - C5 -1T3O - CSRA_BACSU -
40 Fugue 61.2985% -83 - C5 -1Y00 - CSRA_ECOLI -
2 PsiBlast_PDB 61.1686% -81 - C5 -1Y00 - CSRA_ECOLI -
21 HHSearch 60.4842%-119 - C5 -1T3O - CSRA_BACSU -
39 HHSearch 44.1626%-108 - C3 -2K52 - -