@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1025: (2016-01-26 )
MKILPVPMLAAGLALLPSFAQAEFFADGKAGLELRNFYFNRDYRQPGASQSYSEEWAQGFLLRYESGYTEGLFGLGVDALGLLGVRLDSSPERSGSGLLPYSTSDRRAAHDYSSLGLTAKLRVSHSTLKIGTLMPRLPVVQFNDTRLHPQTFQGGLLEVNEIDGLALQFGQLRQVKQRDSTNAEDLGITRGNKRNVLAGRHPGSDRFDFAGGTYRWSERLSSSYHYANLEDFYRQHHLGVQHLLPLADDQSLKSDIRWARSTDEGGSRVNNRALNALFTYRLGGHAFGLGYQRMSGDSGFAYLAGTDPYLVNFVQIGDFANKDERSWQLRYDYDFAAIGLPGLTFMSRYLRGEHIDLLDGGGRGKEWERDTDIAYLVQSGPLKNLGIKLRNGTFRSDFGNDIDETRLIVSYALPLW

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C8E_A_3(2Y0K)
?
[Raw transfer]



C8E_A_9(2Y0K)
?
[Raw transfer]



C8E_B_4(3SZD)
?
[Raw transfer]



C8E_A_3(4FSP)
?
[Raw transfer]



C8E_B_9(4FMS)
?
[Raw transfer]



C8E_A_8(2QTK)
?
[Raw transfer]



C8E_A_9(2Y0H)
?
[Raw transfer]



C8E_A_9(3SZV)
?
[Raw transfer]



C8E_A_9(2Y2X)
?
[Raw transfer]



C8E_B_9(4FRX)
?
[Raw transfer]



C8E_A_9(3SYS)
?
[Raw transfer]



C8E_A_9(2Y2X)
?
[Raw transfer]



C8E_A_13(3T24)
?
[Raw transfer]



C8E_A_2(3SY7)
PORD_PSEAE
[Raw transfer]



C8E_A_2(3SY7)
PORD_PSEAE
[Raw transfer]



C8E_B_5(2QTK)
?
[Raw transfer]



C8E_B_7(4FMS)
?
[Raw transfer]



C8E_A_7(2ODJ)
PORD_PSEAE
[Raw transfer]



C8E_B_5(3SZD)
?
[Raw transfer]



C8E_A_5(4FT6)
?
[Raw transfer]
1 PsiBlast_PDB 93.64100% -36 - C11 -4FRT - ? -
2 PsiBlast_PDB 86.9267% -29 - C11 -3T24 - ? -
22 PsiBlast_CBE 86.4867% -38 - C11 -3T24 - ? -
21 PsiBlast_CBE 85.7667% -32 - C11 -3T24 - ? -
40 HHSearch 83.5264% -26 - C11 -3T24 2.7 ?
3 PsiBlast_PDB 82.0754% -35 - C11 -2Y0L - ? -
4 PsiBlast_PDB 82.0055% -36 - C11 -3T20 - ? -
6 PsiBlast_PDB 81.9555% -42 - C11 -3SZV - ? -
9 PsiBlast_PDB 81.6353% -35 - C11 -4FSP 2.5 ?
8 PsiBlast_PDB 81.4450% -41 - C11 -3T0S - ? -
7 PsiBlast_PDB 81.4450% -41 - C11 -2Y0H - ? -
38 HHSearch 81.0551% -37 - C11 -2Y0H 2.9 ?
5 PsiBlast_PDB 80.8455% -36 - C11 -2Y0K 2.4 ?
39 HHSearch 80.7254% -34 - C11 -2Y0L - ? -
34 HHSearch 80.1453% -38 - C11 -3SZV 1.7 ?
11 PsiBlast_PDB 79.6443% -31 - C11 -4FRX - ? -
10 PsiBlast_PDB 78.4149% -32 - C11 -4FT6 2.1 ?
16 PsiBlast_PDB 78.3144% -36 - C11 -4FMS 1.9 ?
28 PsiBlast_CBE 78.2644% -34 - C11 -3SZD 2.4 ?
27 PsiBlast_CBE 77.6844% -37 - C11 -4FMS 2.6 ?
15 PsiBlast_PDB 77.6044% -32 - C11 -3SZD 2.2 ?
23 PsiBlast_CBE 77.5043% -27 - C11 -4FRX 3.5 ?
33 HHSearch 77.0643% -35 - C11 -2Y2X 3.5 ?
14 PsiBlast_PDB 77.0342% -35 - C11 -3SYS 3.5 ?
13 PsiBlast_PDB 76.8242% -35 - C11 -2Y2X 3.5 ?
12 PsiBlast_PDB 75.8842% -30 - C11 -2QTK 2.6 ?
25 PsiBlast_CBE 75.8142% -31 - C11 -2QTK Error ?
18 PsiBlast_PDB 74.9137% -30 - C11 -3SY7 2.1 PORD_PSEAE
19 PsiBlast_PDB 74.5037% -23 - C11 -2ODJ 2.1 PORD_PSEAE
37 HHSearch 74.1538% -26 - C11 -3SY7 2.0 PORD_PSEAE