@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5038: (2016-03-03 )
MRTLHVDLGERSYPIYIGENLLGDARWFAPHIVGRRVAVISNETVAPLYLETLLKALQGHEVTPVVLPDGEAYKQWETLQLIFDVLLKERHDRKTTLIALGGGVIGDMAGFAAACYQRGVNFIQVPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQPQAVVIDTASLKTLPSRELSAGLAEVIKYGFICDEPFITWLEAHMDALLALEPTVVTEAIERSCAAKARVVGADERESGVRATLNLGHTFGHAIETQQGYGVWLHGEAVGAGTVMALEMSHRLGWLSAAERDRGIRLLRRAGLPVVPPAEMTAEDFMEHMAVDKKVLDGRLRLVLLQGLGNAVVTGDFPREILDATLRTDYRALADQLGDE

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_B_12(3OKF)
AROB_VIBCH
[Raw transfer]




NAD_A_3(3OKF)
AROB_VIBCH
[Raw transfer]




NAD_A_3(3OKF)
AROB_VIBCH
[Raw transfer]




NAD_A_8(1XAG)
AROB_STAAR
[Raw transfer]




NAD_A_6(1DQS)
ARO1_EMENI
[Raw transfer]




NAD_A_6(1DQS)
ARO1_EMENI
[Raw transfer]




NAD_B_8(1DQS)
ARO1_EMENI
[Raw transfer]




NAD_A_19(1NRX)
ARO1_EMENI
[Raw transfer]




NAD_A_5(1XAH)
AROB_STAAR
[Raw transfer]




NAD_A_3(3QBD)
AROB_MYCTU
[Raw transfer]




NAD_B_6(1XAH)
AROB_STAAR
[Raw transfer]




NAD_B_4(3QBD)
AROB_MYCTU
[Raw transfer]




NAD_A_7(1NVB)
ARO1_EMENI
[Raw transfer]




NAD_B_9(1NR5)
ARO1_EMENI
[Raw transfer]




NAD_B_20(1NRX)
ARO1_EMENI
[Raw transfer]




NAD_A_8(1NR5)
ARO1_EMENI
[Raw transfer]




NAD_A_5(1SG6)
ARO1_EMENI
[Raw transfer]




NAD_B_6(1SG6)
ARO1_EMENI
[Raw transfer]




NAD_A_5(1SG6)
ARO1_EMENI
[Raw transfer]




ADP_B_7(1NVA)
ARO1_EMENI
[Raw transfer]




ADP_A_6(1NVA)
ARO1_EMENI
[Raw transfer]




ADP_B_12(1NVF)
ARO1_EMENI
[Raw transfer]




ADP_C_13(1NVF)
ARO1_EMENI
[Raw transfer]




ADP_A_11(1NVF)
ARO1_EMENI
[Raw transfer]




CRB_B_6(1XAI)
AROB_STAAR
[Raw transfer]




CRB_A_5(1XAI)
AROB_STAAR
[Raw transfer]




CRB_A_6(1NVD)
ARO1_EMENI
[Raw transfer]




CRB_A_9(1XAG)
AROB_STAAR
[Raw transfer]




CRB_B_9(1NVB)
ARO1_EMENI
[Raw transfer]




CRB_B_7(1NVD)
ARO1_EMENI
[Raw transfer]




58 HHSearch 97.3055%-118 - C4 -3OKF 9.9 AROB_VIBCH
21 PsiBlast_CBE 97.2159%-113 - C4 -3ZOK - DHQS_ACTCH -
1 PsiBlast_PDB 96.9859%-112 - C4 -3ZOK - DHQS_ACTCH -
22 PsiBlast_CBE 96.5859%-112 - C4 -3ZOK - DHQS_ACTCH -
2 PsiBlast_PDB 96.0255%-121 - C4 -3OKF 9.9 AROB_VIBCH
23 PsiBlast_CBE 95.4359%-110 - C4 -3ZOK - DHQS_ACTCH -
24 PsiBlast_CBE 94.6555%-123 - C4 -3OKF 9.4 AROB_VIBCH
48 Fugue 79.4436% -98 - C4 -1DQS 10.1 ARO1_EMENI
61 HHSearch 79.1238%-103 - C4 -1SG6 9.6 ARO1_EMENI
63 HHSearch 78.4740%-102 - C4 -3QBE - AROB_MYCTU -
4 PsiBlast_PDB 75.9244%-104 - C4 -3QBE - AROB_MYCTU -
35 PsiBlast_CBE 75.4236% -99 - C4 -1NRX 6.4 ARO1_EMENI
7 PsiBlast_PDB 75.1336%-103 - C4 -1NRX 7.2 ARO1_EMENI
3 PsiBlast_PDB 74.0544%-110 - C4 -3QBD 8.1 AROB_MYCTU
25 PsiBlast_CBE 73.9544%-110 - C4 -3QBD 8.1 AROB_MYCTU
34 PsiBlast_CBE 73.7136%-103 - C4 -1NUA - ARO1_EMENI -
30 PsiBlast_CBE 73.6836% -99 - C4 -1NVE - ARO1_EMENI -
33 PsiBlast_CBE 73.3236%-101 - C4 -1NVA 4.2 ARO1_EMENI
17 PsiBlast_PDB 73.2230%-111 - C4 -4P53 - ? -
8 PsiBlast_PDB 73.0336%-105 - C4 -1NUA - ARO1_EMENI -
31 PsiBlast_CBE 72.9736% -89 - C4 -1NVD 5.2 ARO1_EMENI
9 PsiBlast_PDB 72.5636%-102 - C4 -1NVA 4.7 ARO1_EMENI
26 PsiBlast_CBE 72.2936%-102 - C4 -1SG6 9.2 ARO1_EMENI
11 PsiBlast_PDB 72.1536% -91 - C4 -1NVD 5.4 ARO1_EMENI
5 PsiBlast_PDB 72.1236% -85 - C4 -1DQS 10.0 ARO1_EMENI
13 PsiBlast_PDB 72.0136%-100 - C4 -1SG6 9.6 ARO1_EMENI
37 PsiBlast_CBE 71.4936% -89 - C4 -1DQS 10.3 ARO1_EMENI
28 PsiBlast_CBE 71.2236% -86 - C4 -1NVF 4.7 ARO1_EMENI
12 PsiBlast_PDB 70.9936% -86 - C4 -1NVF 4.7 ARO1_EMENI
6 PsiBlast_PDB 70.7536% -85 - C4 -1NR5 10.0 ARO1_EMENI
32 PsiBlast_CBE 70.7436% -87 - C4 -1NVB 4.6 ARO1_EMENI
36 PsiBlast_CBE 70.6636% -86 - C4 -1NR5 9.0 ARO1_EMENI
27 PsiBlast_CBE 70.6636% -85 - C4 -1NVF 5.1 ARO1_EMENI
10 PsiBlast_PDB 70.0536% -87 - C4 -1NVB 7.6 ARO1_EMENI
14 PsiBlast_PDB 69.0336% -94 - C4 -1XAG 7.5 AROB_STAAR
60 HHSearch 68.2934%-107 - C4 -1XAH 7.6 AROB_STAAR
38 PsiBlast_CBE 68.0336% -92 - C4 -1XAI 4.4 AROB_STAAR
15 PsiBlast_PDB 67.6536% -92 - C4 -1XAI 4.5 AROB_STAAR
39 PsiBlast_CBE 67.1236%-101 - C4 -1XAH 8.4 AROB_STAAR