@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1001: (2018-01-02 )
MIYLDNAATTPMSAVAISAMTKVMQETHGNPSSIHGHGRQAGKLLREARQELAQLLRTKPQHIFFTSGGTEANNTTIIGYCLRHQEQGKHIITTAIEHHAVLETIDYLVQHFGFEATIIQPENQEITAQQIQKALRDDTILVSTMFANNETGNLLPIAEIGQILKQHPAAYHVDAVQAIGKIPIHSEELGIDFLTASAHKFHGPKGIGFLYASSMDFDSYLHGGDQEQKKRAGTENLPAIVGMVAALKENLEKQEEHFQHVQNLETAFLAELEGIQYYLNRGKHHLPYVLNIGFPGQKNDLLLLRLDLAGISISTGSACTAGVVQSSHVLEAMYGANSERLKESLRISLSPQNTVEDLQTLAKTLKEIIGG

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMP_A_5(4R5F)
ISCS2_ARCFU
[Raw transfer]



PMP_A_5(4HVK)
ISCS2_ARCFU
[Raw transfer]



PLP_D_4(1ECX)
?
[Raw transfer]



PLP_A_3(3VAX)
?
[Raw transfer]



PLP_A_3(3VAX)
?
[Raw transfer]



PLP_C_3(1ECX)
?
[Raw transfer]



PLP_D_4(1ECX)
?
[Raw transfer]



PLP_C_3(1ECX)
?
[Raw transfer]



ALA_A_4(5B87)
?
[Raw transfer]



ALA_B_8(5B89)
?
[Raw transfer]



PLP_B_6(3LVJ)
ISCS_ECO57
[Raw transfer]



PLP_A_5(3LVJ)
ISCS_ECO57
[Raw transfer]



PLP_A_6(1EG5)
?
[Raw transfer]



PLP_A_6(1EG5)
?
[Raw transfer]



PLP_B_4(3VAX)
?
[Raw transfer]



GOL_B_7(4LW2)
CSDA_ECOLI
[Raw transfer]



PLP_A_3(3A9X)
SCLY_RAT
[Raw transfer]



PLP_B_7(3A9Z)
SCLY_RAT
[Raw transfer]



PLP_B_7(3A9Z)
SCLY_RAT
[Raw transfer]



PLP_A_3(3A9Z)
SCLY_RAT
[Raw transfer]



PLP_B_4(3A9X)
SCLY_RAT
[Raw transfer]



PLP_A_3(3LVK)
ISCS_ECO57
[Raw transfer]



CYS_F_6(1ECX)
?
[Raw transfer]



PLP_A_3(3A9Z)
SCLY_RAT
[Raw transfer]



PLP_B_8(3A9Y)
SCLY_RAT
[Raw transfer]



GOL_B_13(5FT6)
CSDA_ECOLI
[Raw transfer]



CYS_E_5(1ECX)
?
[Raw transfer]



IPA_A_4(5B7U)
?
[Raw transfer]
12 PsiBlast_PDB 85.9932% 0 - C- -5KZ5 - NFS1_HUMAN -
9 PsiBlast_PDB 78.2835% -25 - C1 -1EG5 3.5 ?
21 PsiBlast_CBE 77.4536% -27 - C1 -1ECX 3.9 ?
1 PsiBlast_PDB 75.3336% -28 - C1 -1ECX 3.9 ?
57 Fugue 75.0836% -15 - C1 -4ISY - ISCSL_MYCTU -
7 PsiBlast_PDB 74.7238% 32 - C1 -3LVJ 4.1 ISCS_ECO57
66 HHSearch 74.4338% -12 * C1 *4HVK - ISCS2_ARCFU -
70 HHSearch 74.3437% -19 - C1 -4ISY - ISCSL_MYCTU -
67 HHSearch 74.2738% -15 - C1 -4EB5 - ISCS2_ARCFU -
64 HHSearch 73.6537% 20 - C1 -1EG5 3.5 ?
24 PsiBlast_CBE 73.6238% 37 - C1 -3LVJ 3.9 ISCS_ECO57
26 PsiBlast_CBE 73.5637% -14 - C1 -4ISY - ISCSL_MYCTU -
65 HHSearch 73.0637% 18 - C1 -1ECX 3.9 ?
25 PsiBlast_CBE 72.7137% -12 - C1 -4ISY - ISCSL_MYCTU -
6 PsiBlast_PDB 72.6137% -10 - C1 -4ISY - ISCSL_MYCTU -
8 PsiBlast_PDB 72.2038% 36 - C1 -3LVK 3.5 ISCS_ECO57
55 Fugue 71.8336% 31 - C1 -1ECX 3.7 ?
34 PsiBlast_CBE 71.1433% 4 - C1 -3GZD - SCLY_HUMAN -
14 PsiBlast_PDB 71.1133% -4 - C1 -3GZD - SCLY_HUMAN -
27 PsiBlast_CBE 70.8837% -12 - C1 -4ISY - ISCSL_MYCTU -
32 PsiBlast_CBE 70.0933% -13 - C1 -3A9Y 3.2 SCLY_RAT
31 PsiBlast_CBE 69.1033% -10 - C1 -3A9Z 3.9 SCLY_RAT
81 HHSearch 68.6533% 3 - C1 -3A9Z 3.9 SCLY_RAT
15 PsiBlast_PDB 68.5933% 14 - C1 -3A9X 4.4 SCLY_RAT
82 HHSearch 67.7233% 14 - C1 -3A9Z 4.0 SCLY_RAT
33 PsiBlast_CBE 67.1033% -4 - C1 -3A9X 3.8 SCLY_RAT
16 PsiBlast_PDB 66.3233% -6 - C1 -3A9Z 4.0 SCLY_RAT
10 PsiBlast_PDB 66.2036% -1 - C1 -3VAX 3.8 ?
28 PsiBlast_CBE 64.5536% -1 - C1 -3VAX 3.8 ?
68 HHSearch 64.3436% 3 - C1 -3VAX 3.8 ?