@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 612_tVI_THECC: (2014-05-11 )
TWEVKMAGAELSDAQCKEERNLGINACKPVVYGKLPSPECCQRVRVTHLECVCPVISPQLAALIDINRAVRLIEGCGRRVPRHYKCGSITTP
Atome Classification :
(20 SA)
------------------------------------------......------...10........20-------------.--.--......30.-----.----.-----.---------.----------.--------------..40-.-......-.----------.----------50--......-.-..-60.--.--.-------------....----.70-...----..------...--80----........90.--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------
T
W
E
V
K
M------AGAELS
D
A
Q
C
K
E
E
RN-------------L--G--INACK
P
V
V
Y-----G----K-----L---------P----------
S
--------------
P
E
C
--
C
-
Q
R
V
R
V
T
-
H
----------
L
----------
E
---
C
VCPVI-
S
-
P
Q
-
L
A
A
--
L
--
I
-------------
D
I
N
R
----
A
V
R
-
L
I
E
----
G
C
------
G
RR--VP----
R
H
YKCGSITTP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
84.36
27%
-94
- C4 -
2RKN
2
DIRL1_ARATH
A:
[2-77]
------------------------------------------------------------
I
D
L
C
G
M
S
Q
D
-------------
E
--
L
---
N
E
C
K
P
A
V
S
-----
K
----
E
NPT--
S
---------
P
----------
S
--------------
Q
P
C
--
C
-
T
A
L
Q
H
A
-
D
----------
F
----------
A
---
C
L
C
G
Y
K
-
N
-
S
P
W
L
G
S
F
-
G
--
V
-------------
D
P
E
L
----
A
S
A
-
L
P
K
----
Q
C
------
G
L
A
--
N
A
----
P
--
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
82.57
24%
-94
- C4 -
1AFH
-
NLTP_MAIZE
A:
[3-92]
--------------------------------------------------------------
S
C
G
Q
V
A
S
-------------
A
--
I
---
A
P
C
I
S
Y
A
R
-----
G
Q---
G
-----
S
G--------
P
----------
S
--------------
A
G
C
--
C
-
S
G
V
R
S
L
-
N
----------
N
A
A
RT
T
A
D
R
R
A
A
---
C
N
C
--
L
-
K
-
N
A
-
A
A
G
VS
G
--
L
-------------
N
A
G
N
----
A
A
S
-
I
P
S
----
K
C
------
G
V
S
--
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
82.30
26%
-90
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[3-91]
--------------------------------------------------------------
T
C
G
Q
V
S
S
-------------
S
--
L
---
A
P
C
I
P
Y
V
R
-----
G
G---
G
-----
A
---------
V
----------
P
--------------
P
A
C
--
C
-
N
G
I
R
N
V
-
N
N
L
A
RT
T
P
D
R
Q
A
----------
A
---
C
N
C
--
L
-
K
-
Q
L
-
S
A
S
VP
G
--
V
-------------
N
P
N
N
----
A
A
A
-
L
P
G
----
K
C
------
G
V
S
--
I
P
YKIS
A
S
T
N
C
A
T
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
82.29
25%
-106
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------
A
I
D
L
C
G
M
S
-
Q
-------------
D
--
E
--
L
N
E
C
K
P
A
V
S
-----
K
ENP-
T
-----
S
---------
P
----------
S
--------------
Q
P
C
--
C
-
T
A
L
Q
H
A
-
D
----------
F
----------
A
---
C
L
C
G
Y
K
-
N
-
S
P
-
W
L
G
--
S
F
G
V
-------------
D
P
E
L
----
A
S
A
-
L
P
K
----
Q
C
------
G
L
A
--
N
A
------
P
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
81.01
25%
-71
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[2-89]
--------------------------------------------------------------
D
C
G
H
V
D
S
-------------
L
--
V
---
R
P
C
L
S
Y
V
Q
-----
G
G---
P
-----
G
---------
P
----------
S
--------------
G
Q
C
--
C
-
D
G
V
K
N
L
-
H
----------
N
Q
ARS
Q
S
D
R
Q
S
A
---
C
N
C
L
K
G
-
I
-
A
R
-
G
I
H
--
N
--
L
-------------
N
E
D
N
----
A
R
S
-
I
P
P
----
K
C
------
G
V
N
--
L
P
Y
T
I
S
L
N
I
D
C
S
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
80.35
24%
-68
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[2-90]
--------------------------------------------------------------
T
C
G
Q
V
Q
G
-------------
N
--
L
---
A
Q
C
I
G
F
L
Q
-----
K
G---
G
-----
V
---------
V
----------
P
--------------
P
S
C
--
C
-
T
G
V
K
N
I
-
L
----------
N
SSRTTADR
R
A
V
---
C
S
C
L
K
A
-
A
-
A
G
-
A
V
R
--
G
--
I
-------------
N
P
N
N
----
A
E
A
-
L
P
G
----
K
C
------
G
V
N
--
I
P
YKIS
T
S
T
N
C
N
S
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
79.68
22%
-89
- C4 -
1T12
-
NLTP1_TOBAC
A:
[3-90]
--------------------------------------------------------------
T
C
G
Q
V
T
S
-------------
N
--
L
---
A
P
C
L
A
Y
L
R
-----
N
----
T
-----
G
---------
P
----------
L
--------------
G
R
C
--
C
-
G
G
V
K
A
L
-
V
----------
N
S
A
RT
T
E
D
R
Q
I
A
---
C
T
C
--
L
-
K
-
S
A
-
A
G
A
--
I
SG
I
-------------
N
L
G
K
----
A
A
G
-
L
P
S
----
T
C
------
G
V
N
--
I
P
YKIS
P
S
T
D
C
S
K
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
75.73
20%
-105
* C4 *
1SM7
-
?
A:
[3-103]
-------------------------------------------------------------
Q
K
C
Q
R
E
F
Q
-------------
Q
E
Q
H
--
L
R
A
C
Q
Q
W
I
R
-----
Q
QLAG
S
-----
P
F
S
E
NQWG--
P
QQGPS
L
----
R
--------------
E
Q
C
--
C
-
N
E
L
Y
Q
E
-
D
----------
Q
----------
V
---
C
V
C
P
T
L
-
K
-
Q
A
-
A
K
S
--
V
--
R
VQGQHGPFQST
R
-
I
Y
Q
I
----
A
K
N
-
L
P
N
----
V
C
------
N
M
K
--
Q
I
----
G
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
73.66
15%
-90
- C4 -
2LVF
-
?
A:
[4-101]
-----------------------------------------------------------
A
Q
E
E
C
R
E
Q
M
Q
R
Q
-----------
Q
--
M
--
L
S
H
C
R
M
Y
M
R
Q
Q
M
E
E
S
----
T
-----
Y
---------
Q
TMPRRGMEP
H
M
--------------
S
E
C
--
C
-
E
Q
L
E
G
M
-
D
----------
E
----------
S
---
C
R
C
E
G
L
-
R
-
M
M
-
M
R
M
--
M
--
Q
Q
K
EM
Q
P
R
G
E
Q
M
R
R
M
M
R
L
----
A
E
N
-
I
P
S
----
R
C
------
N
L
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
72.91
29%
-118
- C4 -
1N89
1
NLT2G_WHEAT
A:
[8-65]
-----------------------------------------------------------------------------------------
A
V
C
A
S
A
I
L
-----
S
G---
A
-----
K
---------
P
----------
S
--------------
G
E
C
--
C
-
G
N
L
R
A
Q
-
Q
---------------------
G
---
C
F
C
Q
Y
A
-
K
D
P
T
-
Y
G
Q
--
Y
--
I
-------------
R
S
P
H
----
A
R
D
-
T
L
T
----
S
C
------
G
L
A
--
V
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
72.38
17%
-73
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------
P
------
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
-------------
E
--
A
EM
L
N
H
C
G
M
Y
L
M
-----
K
----
N
-----
L
---------
G
----------
E
RSQVSPR
M
R
E
E
D
H
K
Q
L
C
--
C
-
M
Q
L
K
N
L
-
D
----------
E
----------
K
---
C
M
C
P
A
I
-
M
-
M
M
-
L
N
E
--
P
--
M
-------------
W
I
R
M
----
R
D
Q
-
V
M
S
----
M
A
------
H
N
L
--
P
I
----
E
---
C
N
L
M
S
Q
P
CQM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
66.75
24%
-123
- C4 -
2DS2
-
?
B:
[8-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------
R
Q
C
--
C
-
N
Q
L
R
Q
V
-
D
----------
R
----------
P
---
C
V
C
P
V
L
-
R
-
Q
A
-
A
Q
Q
--
V
--
L
Q
R
Q
IIQG
P
Q
Q
L
R
R
L
F
D
A
----
A
R
N
-
L
P
N
----
I
C
------
N
I
P
--
N
I
----
G
A
--
C
P
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
64.22
19%
-69
- C4 -
1S6D
-
2SS8_HELAN
A:
[7-97]
-----------------------------------------------------------
T
E
S
G
C
Y
Q
Q
M
E
E
A
-----------
E
--
M
--
L
N
H
C
G
M
Y
L
M
-----
K
----
N
LGERS
Q
VSPR
M
R
E
E
D
H
----------
K
--------------
Q
L
C
--
C
-
M
Q
L
K
N
L
-
D
----------
E
----------
K
---
C
M
C
P
A
I
-
M
-
M
M
-
L
N
E
--
P
--
M
WIRMR
D
Q
------
V
M
S
M
----
A
H
N
-
L
P
I
----
E
C
------
N
L
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
60.12
24%
-150
- C4 -
1HYP
-
HPSE_SOYBN
A:
[25-79]
--------------------------------------------------------------------------------------------------------------------------------------
V
--------------
D
D
C
--
C
-
A
L
I
G
G
L
G
D
----------
I
----------
E
A
I
V
C
L
C
I
Q
L
-
R
-
A
---
L
G
--
I
--
L
-------------
N
L
N
R
----
N
L
Q
L
I
L
N
----
S
C
------
G
R
S
--
Y
P
----
S
N
A
T
C
P
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
59.57
15%
-100
- C5 -
3SUM
-
?
A:
[22-156]
------------------------------------------
N
W
L
I
K
W
D
DKFQN
D
T
L
S
I
S
E
F
K
C
S
A
A
L
A
K
L
GPDPKHPPTKL
G
--
E
--
V
L
N
F
P
H
F
V
A
-----
A
----
P
-----
E
---------
A
----------
Q
--------------
T
E
C
G
S
C
-
W
K
L
R
Y
K
-
G
----------
N
----------
H
---
A
F
V
T
V
V
-
D
-
R
V
--
E
E
--
A
--
N
-------------
L
F
V
G
----
G
T
D
-
L
V
K
----
N
L
------
T
T
F
NG
A
P
----
E
G
Y
D
W
G
T
A
Q
L
F
S
A
Y
Q
V
DGSCCQQNTGKQCGDP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
58.03
8%
-81
- C6 -
2HFT
-
?
?:
[107-218]
------------------------------------
N
L
G
QPT
I
Q
S
F
E
Q
------
V
G
T
K
V
N
-
V
T
V
E
D
E
R
T
-------------
L
--
V
--
R
R
N
N
T
F
L
S
L
-----
R
----
D
-----
V
---------
F
----------
G
--------------
K
D
L
--
I
-
Y
T
L
Y
Y
W
-
K
----------
S
----------
S
---
G
K
K
T
A
K
-
T
-
N
T
-
N
E
F
--
L
--
I
-------------
D
V
D
K
G
E
N
Y
C
F
S
-
V
Q
A
----
V
I
PSRTVN
R
K
S
--
T
D
----
S
P
V
E
C
M
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
57.42
23%
-90
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[8-69]
----------------------------------------------------------------------------------------
L
T
V
C
T
G
A
I
A
-----
G
G---
A
-----
R
---------
P
----------
T
--------------
A
A
C
--
C
-
S
S
L
R
A
Q
------------
Q
----------
G
---
C
F
C
Q
F
A
-
K
D
P
R
-
Y
G
R
--
Y
--
V
-------------
N
S
P
N
----
A
R
K
-
A
V
S
----
S
C
------
G
I
A
--
L
P
-------
T
C
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
56.51
17%
-55
- C4 -
1DQA
6
HMDH_HUMAN
A:
[41-449]
LS
D
A
E
I
I
Q
L
V
N
A
K
HIPAYK
L
E
T
L
I
ET
H
E
R
G
V
S
I
R
R
Q
L
L
S
K
K
L
S
E
P
S
S
L
------
Q
Y
L
P
Y
R
D
Y
N
Y
S
L
V
M
G
-------------
A
--
C
--
C
E
N
----
V
I
-----
G
----
Y
-----
M
---------
P
----------
I
--------------
P
V
G
--
V
A
G
P
L
C
L
D
-
E
----------
K
----------
E
---
F
Q
V
P
M
A
-
T
-
T
E
-
G
C
L
--
V
--
A
-------------
S
T
N
R
----
G
C
R
-
A
I
G
----
L
G
------
G
G
A
--
S
S
----
R
V
L
A
D
G
M
T
R
G
P
V
V
R
L
PR
A
C
D
S
A
E
V
K
A
W
L
E
T
S
E
G
F
A
V
I
K
E
A
F
D
STSRFARLQ
K
L
H
T
S
I
AGR
N
L
Y
I
R
F
Q
S
R
S
GDAMG
M
N
M
I
S
K
G
T
E
K
A
L
S
K
L
H
E
Y
F
PEMQILAVSGNYCTDKKPA
A
I
N
W
I
EGRG
K
S
V
V
C
E
A
V
I
P
A
K
V
V
R
EVLKTT
T
E
A
M
I
E
V
N
I
N
K
NL
V
G
S
A
M
A
GSIGGYNAH
A
A
N
I
V
T
A
I
Y
I
A
C
GQDAAQNVGSS
N
C
I
T
L
M
E
A
S
G
PTNE
D
L
Y
I
S
C
T
M
PSIEIGTVGGGTNL
L
P
Q
Q
A
C
L
Q
M
L
GVQGACKDNPG
E
N
A
R
Q
L
A
R
I
V
C
G
T
V
M
A
G
E
L
S
L
M
A
A
L
A
A
GH
L
V
K
S
H
M
I
HN
1
Fugue
56.49
23%
-61
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------
A
G
C
N
A
G
Q
--------------------
L
T
V
C
T
G
A
I
A
G----
G
----
A
-----
R
---------
P
----------
T
--------------
A
A
C
--
C
-
S
S
L
R
-
A
-
Q
----------
Q
----------
G
---
C
F
C
Q
F
A
K
D
-
P
R
-
Y
G
R
--
Y
--
V
-------------
N
S
P
N
----
A
R
K
-
A
V
S
----
S
C
------
G
I
A
--
L
P
-------
T
C
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
47.05
17%
-98
- C4 -
1PNB
-
?
B:
[12-69]
-----------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
C
--
C
-
N
E
L
Y
Q
E
-
D
----------
Q
----------
V
---
C
V
C
P
T
L
-
K
-
Q
A
-
A
K
S
--
V
--
R
VQGQHGPF-----
Q
S
T
R
----
I
Y
Q
-
I
A
K
NLPN
V
C
------
N
M
K
--
Q
I
----
G
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(1 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
T
W
E
V
K
MAGAELS
D
A
Q
C
K
E
E
RNLGINACK
P
V
V
YGKLP
S
P
E
C
C
Q
R
V
R
V
T
H
L
E
C
VCPVI
S
P
Q
L
A
A
L
I
D
I
N
R
A
V
R
L
I
E
G
C
G
RRVP
R
H
YKCGSITTP
39
95.37
100%
-116
- C- -
M039
-
A:
[13-117]
------------
D
A
Q
C
K
E
E
R
N
L
G
I
N
A
C
K
P
V
V
Y
G
K
L
P
S
P
E
C
C
Q
R
V
R
V
T
H
L
E
C
V
C
P
V
I
S
P
Q
L
A
A
L
I
D
I
N
R
A
V
R
L
I
E
G
C
G
R
R
V
P
R
H
Y
K
C
G
S
I
T
T
P